Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012140.1

Orthogroup ID

OG0010602

Physical Location & Seq

Genomic Coordinates Reverse (-)

74120 .. 74782

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012140.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgctacgatcagatttcttggcaatcgaagaagtaggaggtgagagtcggtttgttcattacagagttgatgtagtgtttgctggccatgtccatgcatatgaaagatcacatagaatctcaaatatacactacaacgtaacaagtggttaccagtaccccataccagacaagtcggctcatgtctacataactgttggagatggagggaaccaagaaggtcttgctggaaggtttagagatccacaaccagaatattctgcattccgagaagcgagctatgggcattcgacactagagattcataaccggacacatgcactttaccactggagccgcaatgatgacgggaagaaaatggcaactgacgcatttgtattgcataaccagtactggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

132

Amino Acids

15.23

Weight (kDa)

6.39

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010602)

Species	Orthologous Gene IDs
malus_domestica	MD02G1021400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0147701
rosa_multiflora	Rmu_sc0002539.1_g000114 Rmu_sc0002962.1_g000011 Rmu_sc0012140.1_g000022
rosa_roxburghii	Rroxscaffold_1G00028980 Rroxscaffold_2G00115540 Rroxscaffold_3G00249070 Rroxscaffold_4G00302130 Rroxscaffold_5G00354320 Rroxscaffold_5G00379670 Rroxscaffold_7G00216570
rosa_rugosa	Rorug06G0011500
rosa_samantha	Rh1AG132500 Rh2AG214900 Rh2DG220500 Rh3AG255900 Rh3BG204400 Rh3BG373500 Rh4DG243800 Rh5AG113900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	85
AfaI	GTAC	2 cut(s)	158, 392
AluBI	AGCT	1 cut(s)	279
AluI	AGCT	1 cut(s)	279
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	87
BccI	CCATC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	296
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
BmcAI	AGTACT	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	212, 335
BpmI	CTGGAG	1 cut(s)	352
BsaWI	WCCGGW	1 cut(s)	309
Bse1I	ACTGG	4 cut(s)	154, 335, 388, 398
Bse3DI	GCAATG	1 cut(s)	346
BseMI	GCAATG	1 cut(s)	346
BseNI	ACTGG	4 cut(s)	154, 335, 388, 398
BshFI	GGCC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	310
BsmI	GAATGC	2 cut(s)	263, 286
BsnI	GGCC	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	8, 107, 241
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	212, 335
BspPI	GGATC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	4 cut(s)	154, 335, 388, 398
BssMI	GATC	3 cut(s)	8, 107, 241
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	85, 277
BstEII	GGTNACC	1 cut(s)	149
BstKTI	GATC	3 cut(s)	11, 110, 244
BstMBI	GATC	3 cut(s)	8, 107, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	320
BstPI	GGTNACC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	85, 277
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	157, 391
CviAII	CATG	4 cut(s)	89, 95, 182, 317
CviJI	RGCY	4 cut(s)	87, 179, 279, 336
CviKI_1	RGCY	4 cut(s)	87, 179, 279, 336
CviQI	GTAC	2 cut(s)	157, 391
DpnI	GATC	3 cut(s)	10, 109, 243
DpnII	GATC	3 cut(s)	8, 107, 241
EaeI	YGGCCR	1 cut(s)	85
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	100
FaeI	CATG	4 cut(s)	92, 98, 185, 320
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	4 cut(s)	88, 94, 181, 316
FauNDI	CATATG	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	337
Fsp4HI	GCNGC	1 cut(s)	337
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	1 cut(s)	337
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	310
HgaI	GACGC	1 cut(s)	377
Hin1II	CATG	4 cut(s)	92, 98, 185, 320
HinfI	GANTC	3 cut(s)	46, 117, 301
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	13, 269
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	212, 225
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	98, 263, 320, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	92, 98, 185, 320
Kzo9I	GATC	3 cut(s)	8, 107, 241
LmnI	GCTCC	1 cut(s)	333
LpnPI	CCDG	8 cut(s)	69, 167, 180, 213, 264, 316, 323, 379
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	139, 149
MalI	GATC	3 cut(s)	10, 109, 243
MboI	GATC	3 cut(s)	8, 107, 241
MboII	GAAGA	2 cut(s)	41, 364
MflI	RGATCY	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	87
MluNI	TGGCCA	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	2 cut(s)	32, 200
Mox20I	TGGCCA	1 cut(s)	87
Mph1103I	ATGCAT	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	87
MslI	CAYNNNNRTG	2 cut(s)	93, 99
Msp20I	TGGCCA	1 cut(s)	87
MspI	CCGG	1 cut(s)	310
Mva1269I	GAATGC	2 cut(s)	263, 286
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	3 cut(s)	8, 107, 241
NlaIII	CATG	4 cut(s)	92, 98, 185, 320
NlaIV	GGNNCC	2 cut(s)	212, 335
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	1 cut(s)	320
PctI	GAATGC	2 cut(s)	263, 286
PfeI	GAWTC	2 cut(s)	117, 301
PkrI	GCNGC	1 cut(s)	338
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PspEI	GGTNACC	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	212, 335
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	2 cut(s)	158, 392
RsaNI	GTAC	2 cut(s)	157, 391
RseI	CAYNNNNRTG	2 cut(s)	93, 99
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	3 cut(s)	8, 107, 241
ScaI	AGTACT	1 cut(s)	392
SchI	GAGTC	1 cut(s)	55
SetI	ASST	5 cut(s)	43, 141, 223, 236, 281
SmiMI	CAYNNNNRTG	2 cut(s)	93, 99
SsiI	CCGC	1 cut(s)	337
SspI	AATATT	1 cut(s)	257
SspMI	CTAG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	27, 290
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	2 cut(s)	117, 301
TscAI	CASTG	1 cut(s)	335
TspDTI	ATGAA	3 cut(s)	47, 117, 293
TspRI	CASTG	1 cut(s)	335
XceI	RCATGY	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	296
ZrmI	AGTACT	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.