Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002539.1

Orthogroup ID

OG0010602

Physical Location & Seq

Genomic Coordinates Reverse (-)

469781 .. 473307

Gene Structure 3527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002539.1_g000114.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggcttctcttgctacccttatgaagccatggtgtagagatggtggcctagataccggaaatgtgtgtgcctcctccttgtgcaagcttacatgtgaagaatgggggatgaagaagagaagaataggtgagaagggagaggagtcccaaaattcggccaaaaagcctagggtgaaggaatttggtcttaagcttgtgaaatgtgtgtgcaaaggtgcttacatacccaatcaagggccagctgtcaaactgactcaacttggaggcatcgcactcgtccacgtgtacggacacacgttcttctctcatggagtcattatccttcctatgtgggacccgtctataaccaccgcacgagctaaagttcgtacgctcaaggtgaccgagagatcaagccgaggtgaccataagatgatggctagtgagatcctaccgagtgagtatggaatctcaaatatacactacaacgtaacaagtggttaccagtaccccataccagacaagtcggctcctgtctacataactgttgaagatggagggaaccaagaaggtcttgctggaaggtctagagatccacaaccagaatattctgcattccgagaagcgagctatgggcattcgacactggagattcataaccggacacatgcactttaccactggaaccgcaatgatgacgggaagaaaatggctactgacgcatttgtattgcataaccagtactggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

242

Amino Acids

27.0

Weight (kDa)

9.04

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010602)

Species	Orthologous Gene IDs
malus_domestica	MD02G1021400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0147701
rosa_multiflora	Rmu_sc0002539.1_g000114 Rmu_sc0002962.1_g000011 Rmu_sc0012140.1_g000022
rosa_roxburghii	Rroxscaffold_1G00028980 Rroxscaffold_2G00115540 Rroxscaffold_3G00249070 Rroxscaffold_4G00302130 Rroxscaffold_5G00354320 Rroxscaffold_5G00379670 Rroxscaffold_7G00216570
rosa_rugosa	Rorug06G0011500
rosa_samantha	Rh1AG132500 Rh2AG214900 Rh2DG220500 Rh3AG255900 Rh3BG204400 Rh3BG373500 Rh4DG243800 Rh5AG113900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	516
AciI	CCGC	2 cut(s)	351, 667
AclWI	GGATC	2 cut(s)	421, 566
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	2 cut(s)	151, 179
AcvI	CACGTG	1 cut(s)	283
AfaI	GTAC	4 cut(s)	287, 370, 488, 722
AfiI	CCNNNNNNNGG	3 cut(s)	154, 233, 234
AflII	CTTAAG	1 cut(s)	188
AflIII	ACRYGT	3 cut(s)	92, 282, 294
AgsI	TTSAA	1 cut(s)	530
AluBI	AGCT	5 cut(s)	88, 193, 242, 359, 609
AluI	AGCT	5 cut(s)	88, 193, 242, 359, 609
AlwI	GGATC	2 cut(s)	421, 566
AoxI	GGCC	3 cut(s)	46, 156, 236
ApoI	RAATTY	2 cut(s)	151, 179
AspA2I	CCTAGG	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	236, 334
AsuHPI	GGTGA	4 cut(s)	140, 184, 391, 413
AvaII	GGWCC	1 cut(s)	334
AvrII	CCTAGG	1 cut(s)	167
BauI	CACGAG	1 cut(s)	354
BbrPI	CACGTG	1 cut(s)	283
BccI	CCATC	3 cut(s)	35, 409, 527
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BfaI	CTAG	4 cut(s)	50, 168, 420, 567
BfrI	CTTAAG	1 cut(s)	188
BlnI	CCTAGG	1 cut(s)	167
BmcAI	AGTACT	1 cut(s)	722
Bme18I	GGWCC	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	236, 334
BmiI	GGNNCC	5 cut(s)	335, 336, 510, 542, 665
BmsI	GCATC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	359
BsaAI	YACGTR	1 cut(s)	283
BsaJI	CCNNGG	3 cut(s)	29, 167, 397
BsaWI	WCCGGW	2 cut(s)	56, 639
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 233, 234
Bse1I	ACTGG	5 cut(s)	484, 630, 665, 718, 728
Bse3DI	GCAATG	1 cut(s)	676
BseDI	CCNNGG	3 cut(s)	29, 167, 397
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	154, 233, 234
BseMI	GCAATG	1 cut(s)	676
BseNI	ACTGG	5 cut(s)	484, 630, 665, 718, 728
BseRI	GAGGAG	2 cut(s)	64, 155
BshFI	GGCC	3 cut(s)	48, 158, 238
BsiSI	CCGG	2 cut(s)	57, 640
BsiWI	CGTACG	1 cut(s)	368
BslFI	GGGAC	2 cut(s)	130, 347
BslI	CCNNNNNNNGG	3 cut(s)	154, 233, 234
BsmFI	GGGAC	2 cut(s)	130, 347
BsmI	GAATGC	2 cut(s)	593, 616
BsnI	GGCC	3 cut(s)	48, 158, 238
Bsp143I	GATC	3 cut(s)	389, 426, 571
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	2 cut(s)	351, 667
BspANI	GGCC	3 cut(s)	48, 158, 238
BspLI	GGNNCC	5 cut(s)	335, 336, 510, 542, 665
BspPI	GGATC	2 cut(s)	421, 566
BspTI	CTTAAG	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	676
BsrI	ACTGG	5 cut(s)	484, 630, 665, 718, 728
BssECI	CCNNGG	3 cut(s)	29, 167, 397
BssMI	GATC	3 cut(s)	389, 426, 571
BssSI	CACGAG	1 cut(s)	354
BssT1I	CCWWGG	2 cut(s)	29, 167
Bst2BI	CACGAG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	526
Bst6I	CTCTTC	1 cut(s)	110
BstAFI	CTTAAG	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	3 cut(s)	86, 240, 607
BstDSI	CCRYGG	1 cut(s)	29
BstEII	GGTNACC	3 cut(s)	379, 401, 479
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	3 cut(s)	392, 429, 574
BstMBI	GATC	3 cut(s)	389, 426, 571
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 698
BstNSI	RCATGY	2 cut(s)	96, 650
BstPI	GGTNACC	3 cut(s)	379, 401, 479
BstX2I	RGATCY	2 cut(s)	426, 571
BstYI	RGATCY	2 cut(s)	426, 571
BsuRI	GGCC	3 cut(s)	48, 158, 238
BtgI	CCRYGG	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	623, 658
Cac8I	GCNNGC	3 cut(s)	86, 240, 607
Cfr13I	GGNCC	2 cut(s)	236, 334
CseI	GACGC	1 cut(s)	707
Csp6I	GTAC	4 cut(s)	286, 369, 487, 721
CviAII	CATG	4 cut(s)	30, 93, 308, 647
CviQI	GTAC	4 cut(s)	286, 369, 487, 721
DpnI	GATC	3 cut(s)	391, 428, 573
DpnII	GATC	3 cut(s)	389, 426, 571
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	2 cut(s)	29, 167
Eco47I	GGWCC	1 cut(s)	334
Eco72I	CACGTG	1 cut(s)	283
Eco91I	GGTNACC	3 cut(s)	379, 401, 479
EcoO109I	RGGNCCY	1 cut(s)	334
EcoO65I	GGTNACC	3 cut(s)	379, 401, 479
EcoT14I	CCWWGG	2 cut(s)	29, 167
ErhI	CCWWGG	2 cut(s)	29, 167
FaeI	CATG	4 cut(s)	33, 96, 311, 650
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	2 cut(s)	130, 347
FatI	CATG	4 cut(s)	29, 92, 307, 646
FblI	GTMKAC	1 cut(s)	516
FokI	GGATG	1 cut(s)	121
FspBI	CTAG	4 cut(s)	50, 168, 420, 567
GsuI	CTGGAG	1 cut(s)	647
HaeIII	GGCC	3 cut(s)	48, 158, 238
HapII	CCGG	2 cut(s)	57, 640
HgaI	GACGC	1 cut(s)	707
Hin1II	CATG	4 cut(s)	33, 96, 311, 650
HindIII	AAGCTT	2 cut(s)	86, 191
HinfI	GANTC	5 cut(s)	143, 253, 312, 447, 631
HpaII	CCGG	2 cut(s)	57, 640
HphI	GGTGA	4 cut(s)	140, 184, 391, 413
Hpy166II	GTNNAC	3 cut(s)	280, 286, 517
Hpy188I	TCNGA	1 cut(s)	599
Hpy188III	TCNNGA	1 cut(s)	567
Hpy8I	GTNNAC	3 cut(s)	280, 286, 517
HpyAV	CCTTC	5 cut(s)	127, 169, 332, 542, 555
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4IV	ACGT	3 cut(s)	282, 296, 468
HpyCH4V	TGCA	5 cut(s)	84, 210, 593, 650, 712
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 698
HpySE526I	ACGT	3 cut(s)	282, 296, 468
Hsp92II	CATG	4 cut(s)	33, 96, 311, 650
KflI	GGGWCCC	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	389, 426, 571
LmnI	GCTCC	1 cut(s)	514
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	4 cut(s)	50, 168, 420, 567
MaeII	ACGT	3 cut(s)	282, 296, 468
MaeIII	GTNAC	4 cut(s)	379, 401, 469, 479
MalI	GATC	3 cut(s)	391, 428, 573
MboI	GATC	3 cut(s)	389, 426, 571
MboII	GAAGA	7 cut(s)	110, 124, 127, 132, 292, 542, 694
MflI	RGATCY	2 cut(s)	426, 571
MluCI	AATT	2 cut(s)	151, 179
MlyI	GAGTC	3 cut(s)	152, 247, 321
MnlI	CCTC	6 cut(s)	82, 85, 133, 257, 392, 530
MseI	TTAA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	2 cut(s)	57, 640
Mva1269I	GAATGC	2 cut(s)	593, 616
MwoI	GCNNNNNNNGC	2 cut(s)	11, 698
NcoI	CCATGG	1 cut(s)	29
NdeII	GATC	3 cut(s)	389, 426, 571
NlaIII	CATG	4 cut(s)	33, 96, 311, 650
NlaIV	GGNNCC	5 cut(s)	335, 336, 510, 542, 665
NmeAIII	GCCGAG	1 cut(s)	422
NmuCI	GTSAC	2 cut(s)	379, 401
NspI	RCATGY	2 cut(s)	96, 650
PciI	ACATGT	1 cut(s)	92
PctI	GAATGC	2 cut(s)	593, 616
PfeI	GAWTC	2 cut(s)	447, 631
Pfl23II	CGTACG	1 cut(s)	368
PleI	GAGTC	3 cut(s)	151, 247, 320
PmaCI	CACGTG	1 cut(s)	283
PmlI	CACGTG	1 cut(s)	283
PpsI	GAGTC	3 cut(s)	151, 247, 320
Ppu21I	YACGTR	1 cut(s)	283
PpuMI	RGGWCCY	1 cut(s)	334
PscI	ACATGT	1 cut(s)	92
Psp5II	RGGWCCY	1 cut(s)	334
PspCI	CACGTG	1 cut(s)	283
PspEI	GGTNACC	3 cut(s)	379, 401, 479
PspLI	CGTACG	1 cut(s)	368
PspN4I	GGNNCC	5 cut(s)	335, 336, 510, 542, 665
PspPI	GGNCC	2 cut(s)	236, 334
PspPPI	RGGWCCY	1 cut(s)	334
PsuI	RGATCY	2 cut(s)	426, 571
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	4 cut(s)	287, 370, 488, 722
RsaNI	GTAC	4 cut(s)	286, 369, 487, 721
SaqAI	TTAA	1 cut(s)	189
Sau3AI	GATC	3 cut(s)	389, 426, 571
Sau96I	GGNCC	2 cut(s)	236, 334
ScaI	AGTACT	1 cut(s)	722
SchI	GAGTC	3 cut(s)	152, 247, 321
SfaNI	GCATC	1 cut(s)	276
SinI	GGWCC	1 cut(s)	334
SmlI	CTYRAG	2 cut(s)	188, 374
SmoI	CTYRAG	2 cut(s)	188, 374
Sse9I	AATT	2 cut(s)	151, 179
SsiI	CCGC	2 cut(s)	351, 667
SspI	AATATT	1 cut(s)	587
SspMI	CTAG	4 cut(s)	50, 168, 420, 567
StyI	CCWWGG	2 cut(s)	29, 167
TaaI	ACNGT	1 cut(s)	526
TaiI	ACGT	3 cut(s)	285, 299, 471
TaqI	TCGA	1 cut(s)	620
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	2 cut(s)	151, 179
TatI	WGTACW	1 cut(s)	720
TfiI	GAWTC	2 cut(s)	447, 631
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	630, 665
TseFI	GTSAC	2 cut(s)	379, 401
Tsp45I	GTSAC	2 cut(s)	379, 401
TspDTI	ATGAA	3 cut(s)	38, 125, 623
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	2 cut(s)	630, 665
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	334
XapI	RAATTY	2 cut(s)	151, 179
XbaI	TCTAGA	1 cut(s)	566
XceI	RCATGY	2 cut(s)	96, 650
XmaJI	CCTAGG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	4 cut(s)	50, 168, 420, 567
ZrmI	AGTACT	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.