Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007083

Physical Location & Seq

Genomic Coordinates Forward (+)

10714607 .. 10716513

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1132500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAGACTCCATCGTCAATCAGAAGAGTCACGAGGTCTCAGACTTCGGTTGCTCAGAACAACAGCAACATTCCCCTTTCAAGAAAGACTGAAGATTCTGAGAAAGCTCTGTTGAAATCGAGACCAAGAAATGGGAAGCAACAGCAAGACCGGTCTGTACTGATTGATATCACCAACGATTCTCCGATTGTGGGGCTTGCAACGGGAAGTTTAAAGACACCGTCGTCGGGCATACTGAAGCAGAGAAGCTGCAGAGCCAAGAACACACCCGGGTCCGGAGAGGCCTTGCTGAGAGGTCAAGTCAAGACCCTCTTGCAGCAAGTTGAAGAGGAGGCTGAGCTCTCAAAGATCTCGCTCGAAAGCCGCCCTATTCACCTGATTCAAGGCCTCGTCGCCAATTCTCCAATGGGGCTCCTCGCGCCAACACCGGCAAACACTCCACAGGTAGCTGATATCTCTGTTGGTGCAAGTGGAAGCAGCAATGTTGGTCTGAGTTCTGAGAAACCTTCTCCCCTCGTCCAAGAACAATTGATTTCTCAGGTGGTATGTGACATCTTTGAAGGAAAAAATCAGGGGAGCCTCGAATCTCAGAAGAGTATCCTGAGCCGGTCTCTGCTGCTGGATTTCTCTGAGAAGTCCGAAATCTCCTCAGTCTCATCTGAGTTCTCCTCTGTGATTACTGACAGCAAAGAGAAGTCATCATCCCCAGATGATGACAATGCTTCCATCTGGTCGATGCAGGTCAATGCTAGCACCCATGATGAAGATGAGGAAGAATTAGCAGACAACGATAAAGACGACTATTATCTGAAGCTTAATGAAGGTTATGGGATGGAAGAAGAAGAGGAACAAGATGGAGGATACAATGTGGATGAGCTCTGTGATGGAATAAGCAATATATGTGTCGATGAGACGAGAAGGGTTCCCAAGTTTGCTGGAAAGCACACCAGATTTGTGTATGACAGTGAAGATGAAATTGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGGATCTGCAAAGACTCCGGAATCAGCTTCGCCGGGTGCCCTGCGGCTGAAGGGTTTGCCAACACCAAAGGGGAAGCACCTGCGGTTTCTTGAGGAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

371

Amino Acids

40.39

Weight (kDa)

4.59

Isoelectric Point (pI)

66.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51230 AT5G66230 AT5G66230
malus_domestica	MD02G1132500.v1.1 MD15G1246000.v1.1
prunus_persica	Prupe.7G168100_v2.0.a1
pyrus_communis	pycom02g10400 pycom15g21610
rosa_chinensis	RchiOBHm_Chr2g0099451 RchiOBHm_Chr6g0272671
rosa_laevigata	RLG00000004887 RLG00000016883
rosa_multiflora	Rmu_sc0002542.1_g000003 Rmu_sc0004888.1_g000020
rosa_roxburghii	Rroxscaffold_2G00143070
rosa_rugosa	Rorug02G0079600
rosa_samantha	Rh2AG129600 Rh2BG132700 Rh2CG133400 Rh2DG133700 Rh6AG170300 Rh6CG169700 Rh6DG179800
rosa_wichuraiana	Rw2G009980 Rw5G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1095
AasI	GACNNNNNNGTC	2 cut(s)	13, 223
Acc36I	ACCTGC	2 cut(s)	730, 1095
AccB1I	GGYRCC	1 cut(s)	1043
AccB7I	CCANNNNNTGG	1 cut(s)	131
AccII	CGCG	1 cut(s)	419
AccIII	TCCGGA	2 cut(s)	275, 1024
AciI	CCGC	3 cut(s)	364, 1051, 1090
AclWI	GGATC	1 cut(s)	1018
AcuI	CTGAAG	4 cut(s)	111, 257, 830, 1076
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	4 cut(s)	131, 191, 227, 275
AgeI	ACCGGT	1 cut(s)	150
AgsI	TTSAA	6 cut(s)	81, 115, 326, 383, 560, 983
AluBI	AGCT	7 cut(s)	107, 249, 340, 449, 814, 877, 1034
AluI	AGCT	7 cut(s)	107, 249, 340, 449, 814, 877, 1034
Alw21I	GWGCWC	2 cut(s)	342, 879
Alw26I	GTCTC	5 cut(s)	42, 115, 615, 658, 905
AlwI	GGATC	1 cut(s)	1018
Ama87I	CYCGRG	1 cut(s)	269
Aor13HI	TCCGGA	2 cut(s)	275, 1024
AoxI	GGCC	2 cut(s)	282, 385
ApeKI	GCWGC	4 cut(s)	249, 316, 477, 616
AsiGI	ACCGGT	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	3 cut(s)	270, 271, 1041
AsuHPI	GGTGA	2 cut(s)	163, 365
AsuNHI	GCTAGC	1 cut(s)	749
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	1048
BanI	GGYRCC	1 cut(s)	1043
BanII	GRGCYC	3 cut(s)	342, 414, 879
BauI	CACGAG	1 cut(s)	31
Bbv12I	GWGCWC	2 cut(s)	342, 879
BbvI	GCAGC	4 cut(s)	236, 328, 489, 603
BccI	CCATC	5 cut(s)	19, 734, 826, 848, 878
BciVI	GTATCC	2 cut(s)	608, 854
BcnI	CCSGG	3 cut(s)	270, 271, 1041
BcoDI	GTCTC	5 cut(s)	42, 115, 615, 658, 905
BfaI	CTAG	1 cut(s)	750
BfmI	CTRYAG	1 cut(s)	250
BfuAI	ACCTGC	2 cut(s)	730, 1095
BfuI	GTATCC	2 cut(s)	608, 854
BglII	AGATCT	1 cut(s)	348
BisI	GCNGC	6 cut(s)	250, 317, 364, 478, 617, 1052
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	6 cut(s)	251, 318, 365, 479, 618, 1053
Bme1390I	CCNGG	3 cut(s)	270, 271, 1041
Bme18I	GGWCC	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	5 cut(s)	274, 413, 578, 924, 1045
BmrFI	CCNGG	3 cut(s)	270, 271, 1041
BmsI	GCATC	1 cut(s)	726
BmtI	GCTAGC	1 cut(s)	753
BplI	GAGNNNNNCTC	4 cut(s)	595, 627, 653, 685
Bpu10I	CCTNAGC	1 cut(s)	602
Bpu1102I	GCTNAGC	1 cut(s)	336
BpuMI	CCSGG	3 cut(s)	270, 271, 1041
BsaBI	GATNNNNATC	1 cut(s)	167
BsaI	GGTCTC	3 cut(s)	42, 115, 615
BsaJI	CCNNGG	1 cut(s)	269
BsaWI	WCCGGW	3 cut(s)	150, 275, 1024
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 191, 227, 275
Bse118I	RCCGGY	3 cut(s)	150, 427, 606
Bse3DI	GCAATG	1 cut(s)	487
Bse8I	GATNNNNATC	1 cut(s)	167
BseAI	TCCGGA	2 cut(s)	275, 1024
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	3 cut(s)	701, 837, 877
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	4 cut(s)	131, 191, 227, 275
BseMI	GCAATG	1 cut(s)	487
BseRI	GAGGAG	4 cut(s)	344, 404, 637, 658
BseSI	GKGCMC	1 cut(s)	1048
BseXI	GCAGC	4 cut(s)	236, 328, 489, 603
Bsh1236I	CGCG	1 cut(s)	419
BshFI	GGCC	2 cut(s)	284, 387
BshNI	GGYRCC	1 cut(s)	1043
BshTI	ACCGGT	1 cut(s)	150
BsiHKAI	GWGCWC	2 cut(s)	342, 879
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	7 cut(s)	151, 270, 276, 428, 607, 1025, 1040
BslI	CCNNNNNNNGG	4 cut(s)	131, 191, 227, 275
BsmAI	GTCTC	5 cut(s)	42, 115, 615, 658, 905
BsmBI	CGTCTC	1 cut(s)	905
BsnI	GGCC	2 cut(s)	284, 387
Bso31I	GGTCTC	3 cut(s)	42, 115, 615
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	4 cut(s)	342, 414, 879, 1048
Bsp13I	TCCGGA	2 cut(s)	275, 1024
Bsp143I	GATC	2 cut(s)	348, 1010
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	3 cut(s)	364, 1051, 1090
BspANI	GGCC	2 cut(s)	284, 387
BspEI	TCCGGA	2 cut(s)	275, 1024
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	5 cut(s)	274, 413, 578, 924, 1045
BspMAI	CTGCAG	1 cut(s)	254
BspMI	ACCTGC	2 cut(s)	730, 1095
BspOI	GCTAGC	1 cut(s)	753
BspPI	GGATC	1 cut(s)	1018
BspT107I	GGYRCC	1 cut(s)	1043
BspTNI	GGTCTC	3 cut(s)	42, 115, 615
BsrDI	GCAATG	1 cut(s)	487
BsrFI	RCCGGY	3 cut(s)	150, 427, 606
BssAI	RCCGGY	3 cut(s)	150, 427, 606
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	2 cut(s)	348, 1010
BssSI	CACGAG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	222, 965
Bst6I	CTCTTC	4 cut(s)	19, 321, 587, 837
BstC8I	GCNNGC	2 cut(s)	198, 751
BstF5I	GGATG	3 cut(s)	701, 837, 877
BstFNI	CGCG	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	2 cut(s)	351, 1013
BstMAI	GTCTC	5 cut(s)	42, 115, 615, 658, 905
BstMBI	GATC	2 cut(s)	348, 1010
BstMWI	GCNNNNNNNGC	1 cut(s)	418
BstSCI	CCNGG	3 cut(s)	268, 269, 1039
BstSFI	CTRYAG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	1048
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	4 cut(s)	236, 328, 489, 603
BstX2I	RGATCY	2 cut(s)	348, 1010
BstYI	RGATCY	2 cut(s)	348, 1010
BsuI	GTATCC	2 cut(s)	608, 854
BsuRI	GGCC	2 cut(s)	284, 387
BtsCI	GGATG	3 cut(s)	701, 837, 877
BtsIMutI	CAGTG	1 cut(s)	970
BveI	ACCTGC	2 cut(s)	730, 1095
Cac8I	GCNNGC	2 cut(s)	198, 751
CfoI	GCGC	1 cut(s)	421
Cfr10I	RCCGGY	3 cut(s)	150, 427, 606
Cfr13I	GGNCC	1 cut(s)	273
Cfr9I	CCCGGG	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	158
CspAI	ACCGGT	1 cut(s)	150
CviAII	CATG	1 cut(s)	758
CviQI	GTAC	1 cut(s)	158
DpnI	GATC	2 cut(s)	350, 1012
DpnII	GATC	2 cut(s)	348, 1010
DraI	TTTAAA	1 cut(s)	213
DrdI	GACNNNNNNGTC	2 cut(s)	13, 223
DseDI	GACNNNNNNGTC	2 cut(s)	13, 223
Eam1104I	CTCTTC	4 cut(s)	19, 321, 587, 837
EarI	CTCTTC	4 cut(s)	19, 321, 587, 837
Ecl136II	GAGCTC	2 cut(s)	340, 877
Eco147I	AGGCCT	2 cut(s)	284, 387
Eco24I	GRGCYC	3 cut(s)	342, 414, 879
Eco31I	GGTCTC	3 cut(s)	42, 115, 615
Eco32I	GATATC	2 cut(s)	169, 454
Eco47I	GGWCC	1 cut(s)	273
Eco53kI	GAGCTC	2 cut(s)	340, 877
Eco57I	CTGAAG	4 cut(s)	111, 257, 830, 1076
Eco88I	CYCGRG	1 cut(s)	269
EcoICRI	GAGCTC	2 cut(s)	340, 877
EcoRV	GATATC	2 cut(s)	169, 454
EcoT38I	GRGCYC	3 cut(s)	342, 414, 879
Esp3I	CGTCTC	1 cut(s)	905
FaeI	CATG	1 cut(s)	761
FaiI	YATR	7 cut(s)	233, 547, 759, 828, 899, 901, 960
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	1 cut(s)	757
Fnu4HI	GCNGC	6 cut(s)	250, 317, 364, 478, 617, 1052
FokI	GGATG	3 cut(s)	688, 844, 884
FriOI	GRGCYC	3 cut(s)	342, 414, 879
Fsp4HI	GCNGC	6 cut(s)	250, 317, 364, 478, 617, 1052
FspBI	CTAG	1 cut(s)	750
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	6 cut(s)	250, 317, 364, 478, 617, 1052
HaeIII	GGCC	2 cut(s)	284, 387
HapII	CCGG	7 cut(s)	151, 270, 276, 428, 607, 1025, 1040
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	1 cut(s)	761
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	1 cut(s)	812
HinfI	GANTC	8 cut(s)	7, 27, 95, 179, 379, 584, 1021, 1028
HpaII	CCGG	7 cut(s)	151, 270, 276, 428, 607, 1025, 1040
HphI	GGTGA	2 cut(s)	163, 365
Hpy188III	TCNNGA	8 cut(s)	31, 81, 120, 276, 304, 601, 1025, 1097
Hpy99I	CGWCG	3 cut(s)	226, 229, 395
HpyAV	CCTTC	6 cut(s)	516, 554, 815, 912, 1001, 1051
HpyCH4III	ACNGT	2 cut(s)	222, 965
HpyCH4V	TGCA	6 cut(s)	200, 252, 316, 467, 739, 1016
HpyF10VI	GCNNNNNNNGC	1 cut(s)	418
Hsp92II	CATG	1 cut(s)	761
HspAI	GCGC	1 cut(s)	419
Kpn2I	TCCGGA	2 cut(s)	275, 1024
Kzo9I	GATC	2 cut(s)	348, 1010
LmnI	GCTCC	2 cut(s)	417, 576
Lsp1109I	GCAGC	4 cut(s)	236, 328, 489, 603
LweI	GCATC	1 cut(s)	726
MaeI	CTAG	1 cut(s)	750
MaeIII	GTNAC	2 cut(s)	28, 548
MalI	GATC	2 cut(s)	350, 1012
MboI	GATC	2 cut(s)	348, 1010
MfeI	CAATTG	1 cut(s)	527
MflI	RGATCY	2 cut(s)	348, 1010
MhlI	GDGCHC	4 cut(s)	342, 414, 879, 1048
MluCI	AATT	4 cut(s)	397, 527, 776, 975
MlyI	GAGTC	2 cut(s)	36, 1015
MroI	TCCGGA	2 cut(s)	275, 1024
MseI	TTAA	2 cut(s)	212, 816
MspI	CCGG	7 cut(s)	151, 270, 276, 428, 607, 1025, 1040
MspR9I	CCNGG	3 cut(s)	270, 271, 1041
MunI	CAATTG	1 cut(s)	527
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	418
NciI	CCSGG	3 cut(s)	270, 271, 1041
NdeII	GATC	2 cut(s)	348, 1010
NheI	GCTAGC	1 cut(s)	749
NlaIII	CATG	1 cut(s)	761
NlaIV	GGNNCC	5 cut(s)	274, 413, 578, 924, 1045
NmuCI	GTSAC	2 cut(s)	28, 548
PaqCI	CACCTGC	1 cut(s)	1095
PceI	AGGCCT	2 cut(s)	284, 387
PcsI	WCGNNNNNNNCGW	1 cut(s)	795
PfeI	GAWTC	5 cut(s)	95, 179, 379, 584, 1028
PflFI	GACNNNGTC	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	131
PinAI	ACCGGT	1 cut(s)	150
PkrI	GCNGC	6 cut(s)	251, 318, 365, 479, 618, 1053
PleI	GAGTC	2 cut(s)	35, 1015
PpsI	GAGTC	2 cut(s)	35, 1015
Psp124BI	GAGCTC	2 cut(s)	342, 879
PspN4I	GGNNCC	5 cut(s)	274, 413, 578, 924, 1045
PspPI	GGNCC	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	348, 1010
PsyI	GACNNNGTC	1 cut(s)	220
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SacI	GAGCTC	2 cut(s)	342, 879
SaqAI	TTAA	2 cut(s)	212, 816
SatI	GCNGC	6 cut(s)	250, 317, 364, 478, 617, 1052
Sau3AI	GATC	2 cut(s)	348, 1010
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	2 cut(s)	36, 1015
ScrFI	CCNGG	3 cut(s)	270, 271, 1041
SduI	GDGCHC	4 cut(s)	342, 414, 879, 1048
SfaNI	GCATC	1 cut(s)	726
SfcI	CTRYAG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	273
SmaI	CCCGGG	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	1097
SmoI	CTYRAG	1 cut(s)	1097
Sse9I	AATT	4 cut(s)	397, 527, 776, 975
SseBI	AGGCCT	2 cut(s)	284, 387
SsiI	CCGC	3 cut(s)	364, 1051, 1090
SspMI	CTAG	1 cut(s)	750
SstI	GAGCTC	2 cut(s)	342, 879
StuI	AGGCCT	2 cut(s)	284, 387
StyD4I	CCNGG	3 cut(s)	268, 269, 1039
TaaI	ACNGT	2 cut(s)	222, 965
TaqI	TCGA	5 cut(s)	119, 357, 582, 734, 906
TasI	AATT	4 cut(s)	397, 527, 776, 975
TatI	WGTACW	1 cut(s)	157
TauI	GCSGC	2 cut(s)	366, 1054
TfiI	GAWTC	5 cut(s)	95, 179, 379, 584, 1028
Tru1I	TTAA	2 cut(s)	212, 816
Tru9I	TTAA	2 cut(s)	212, 816
TscAI	CASTG	1 cut(s)	970
TseFI	GTSAC	2 cut(s)	28, 548
TseI	GCWGC	4 cut(s)	249, 316, 477, 616
Tsp45I	GTSAC	2 cut(s)	28, 548
TspDTI	ATGAA	3 cut(s)	777, 834, 987
TspMI	CCCGGG	1 cut(s)	269
TspRI	CASTG	1 cut(s)	970
Tth111I	GACNNNGTC	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XmaI	CCCGGG	1 cut(s)	269
XspI	CTAG	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.