Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007083

Physical Location & Seq

Genomic Coordinates Forward (+)

7217958 .. 7219439

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g10400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGACTCCGTCGTCAATCAGAAGAGTCACGAGGTCTCAGACTTCGGCTGCTCAGAACAGCAGCAACATTCCCCTTTCAAGAAAGACTGAAGATTCTGAGAAAGCTCTGTTGAAATCGAGACCAAGAAATGGGAAGCAACAGCAAGACCGTTCTGCACTGATTGATATCACCAACGATTCTCCGATTGTGGGGCTTGCAACGGGAAGCTTAAAGACACCGTCATCGGGCATACTCAAGCAGAGAAGCTGCAGAGCCAAGAACACACCCGGGTCCGGAGAGGCCTTGCTGAGAGGTCAAGTCAAGACCCTCTTGCAGCAAGTTGAAGAGGAGGCTGAGCTCTCAAAGATCTCGCTCGAAAGCCGCCCTATTCACCTAATTCAAGGCCTTATCGCCAATTCTCCAATGGGGCTCCTCGCGCCAACACCGGCAAACACTCCACAGGTGGTATGTGACATCTTTGAAGGAAAAAATCAGGGGAGCCTCGAATCTCAGAAGAGTATCCTGAGCCGGTCTCTGCTGCTGGATTTCTCCGAGAAGTCCGAAATCTCCTCAGTCTCATCCGAGTTCTCCTCTGTGATTACTGACAGCAAAGAGAAGTCATCGTCCCCAGATGATGACAATGCTTCCATCTGGTCGATGCAGGTCAATGCTAGCACCCAAGATGAAGACGAGGAAGAATTAGCAGACAGCGATGAAGAAGAAGACTATTATCTGAAGCTTAATGAAGGTTATGGAATGGAAGAAGAAGAAAAGGAACAAGATGGAGGATACAATGTGGATGAGCTCTGTGATGGAATAAGCAATATTTGTGTCGATGAGACGAGAAGGGTTCCCAAGTTTGCTGGAAAGCACACCAGATTTGTGTATGACAGTGAAGATGAAATTGTTGAAGAAGAAGAAGAAGAAGGAACTGCAAAGACTCCGGAATCAGCTTCGCCGGGTGCCCTGCGGCTGAAGGGTTTGCCAACACCAAAGGGGAAGCACCTGCGGTTTCTTGAGGAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

338

Amino Acids

37.01

Weight (kDa)

4.62

Isoelectric Point (pI)

68.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51230 AT5G66230 AT5G66230
malus_domestica	MD02G1132500.v1.1 MD15G1246000.v1.1
prunus_persica	Prupe.7G168100_v2.0.a1
pyrus_communis	pycom02g10400 pycom15g21610
rosa_chinensis	RchiOBHm_Chr2g0099451 RchiOBHm_Chr6g0272671
rosa_laevigata	RLG00000004887 RLG00000016883
rosa_multiflora	Rmu_sc0002542.1_g000003 Rmu_sc0004888.1_g000020
rosa_roxburghii	Rroxscaffold_2G00143070
rosa_rugosa	Rorug02G0079600
rosa_samantha	Rh2AG129600 Rh2BG132700 Rh2CG133400 Rh2DG133700 Rh6AG170300 Rh6CG169700 Rh6DG179800
rosa_wichuraiana	Rw2G009980 Rw5G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	996
AasI	GACNNNNNNGTC	1 cut(s)	13
Acc36I	ACCTGC	2 cut(s)	634, 996
AccB1I	GGYRCC	1 cut(s)	944
AccB7I	CCANNNNNTGG	1 cut(s)	131
AccII	CGCG	1 cut(s)	419
AccIII	TCCGGA	2 cut(s)	275, 925
AciI	CCGC	3 cut(s)	364, 952, 991
AcuI	CTGAAG	3 cut(s)	111, 737, 977
AfiI	CCNNNNNNNGG	4 cut(s)	131, 191, 227, 275
AgsI	TTSAA	6 cut(s)	81, 115, 326, 383, 464, 893
AluBI	AGCT	7 cut(s)	107, 210, 249, 340, 721, 787, 935
AluI	AGCT	7 cut(s)	107, 210, 249, 340, 721, 787, 935
Alw21I	GWGCWC	2 cut(s)	342, 789
Alw26I	GTCTC	5 cut(s)	42, 115, 519, 562, 815
Ama87I	CYCGRG	1 cut(s)	269
Aor13HI	TCCGGA	2 cut(s)	275, 925
AoxI	GGCC	2 cut(s)	282, 385
ApeKI	GCWGC	5 cut(s)	50, 63, 249, 316, 520
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	3 cut(s)	270, 271, 942
AsuHPI	GGTGA	2 cut(s)	163, 365
AsuNHI	GCTAGC	1 cut(s)	653
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	949
BanI	GGYRCC	1 cut(s)	944
BanII	GRGCYC	3 cut(s)	342, 414, 789
BauI	CACGAG	1 cut(s)	31
BbsI	GAAGAC	2 cut(s)	675, 711
Bbv12I	GWGCWC	2 cut(s)	342, 789
BbvI	GCAGC	5 cut(s)	37, 75, 236, 328, 507
BccI	CCATC	3 cut(s)	638, 758, 788
BciVI	GTATCC	2 cut(s)	512, 764
BcnI	CCSGG	3 cut(s)	270, 271, 942
BcoDI	GTCTC	5 cut(s)	42, 115, 519, 562, 815
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	1 cut(s)	250
BfuAI	ACCTGC	2 cut(s)	634, 996
BfuI	GTATCC	2 cut(s)	512, 764
BglII	AGATCT	1 cut(s)	348
BisI	GCNGC	7 cut(s)	51, 64, 250, 317, 364, 521, 953
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	7 cut(s)	52, 65, 251, 318, 365, 522, 954
Bme1390I	CCNGG	3 cut(s)	270, 271, 942
Bme18I	GGWCC	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	5 cut(s)	274, 413, 482, 834, 946
BmrFI	CCNGG	3 cut(s)	270, 271, 942
BmsI	GCATC	1 cut(s)	630
BmtI	GCTAGC	1 cut(s)	657
BpiI	GAAGAC	2 cut(s)	675, 711
BplI	GAGNNNNNCTC	4 cut(s)	499, 531, 557, 589
Bpu10I	CCTNAGC	1 cut(s)	506
Bpu1102I	GCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	3 cut(s)	270, 271, 942
BsaBI	GATNNNNATC	1 cut(s)	167
BsaI	GGTCTC	3 cut(s)	42, 115, 519
BsaJI	CCNNGG	1 cut(s)	269
BsaWI	WCCGGW	2 cut(s)	275, 925
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 191, 227, 275
Bse118I	RCCGGY	2 cut(s)	427, 510
Bse8I	GATNNNNATC	1 cut(s)	167
BseAI	TCCGGA	2 cut(s)	275, 925
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	560, 787
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	4 cut(s)	131, 191, 227, 275
BseMII	CTCAG	8 cut(s)	53, 68, 90, 281, 327, 497, 506, 567
BseRI	GAGGAG	4 cut(s)	344, 404, 541, 562
BseSI	GKGCMC	1 cut(s)	949
BseXI	GCAGC	5 cut(s)	37, 75, 236, 328, 507
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	419
BshFI	GGCC	2 cut(s)	284, 387
BshNI	GGYRCC	1 cut(s)	944
BsiHKAI	GWGCWC	2 cut(s)	342, 789
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	6 cut(s)	270, 276, 428, 511, 926, 941
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	4 cut(s)	131, 191, 227, 275
BsmAI	GTCTC	5 cut(s)	42, 115, 519, 562, 815
BsmBI	CGTCTC	1 cut(s)	815
BsmFI	GGGAC	1 cut(s)	592
BsnI	GGCC	2 cut(s)	284, 387
Bso31I	GGTCTC	3 cut(s)	42, 115, 519
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	4 cut(s)	342, 414, 789, 949
Bsp13I	TCCGGA	2 cut(s)	275, 925
Bsp143I	GATC	1 cut(s)	348
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	3 cut(s)	364, 952, 991
BspANI	GGCC	2 cut(s)	284, 387
BspCNI	CTCAG	8 cut(s)	52, 67, 91, 282, 328, 498, 505, 566
BspEI	TCCGGA	2 cut(s)	275, 925
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	5 cut(s)	274, 413, 482, 834, 946
BspMAI	CTGCAG	1 cut(s)	254
BspMI	ACCTGC	2 cut(s)	634, 996
BspOI	GCTAGC	1 cut(s)	657
BspT107I	GGYRCC	1 cut(s)	944
BspTNI	GGTCTC	3 cut(s)	42, 115, 519
BsrFI	RCCGGY	2 cut(s)	427, 510
BssAI	RCCGGY	2 cut(s)	427, 510
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	1 cut(s)	348
BssSI	CACGAG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	31
Bst4CI	ACNGT	3 cut(s)	152, 222, 875
Bst6I	CTCTTC	3 cut(s)	19, 321, 491
BstC8I	GCNNGC	2 cut(s)	198, 655
BstDEI	CTNAG	8 cut(s)	39, 54, 99, 290, 336, 492, 506, 553
BstF5I	GGATG	2 cut(s)	560, 787
BstFNI	CGCG	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	5 cut(s)	42, 115, 519, 562, 815
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	418
BstSCI	CCNGG	3 cut(s)	268, 269, 940
BstSFI	CTRYAG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	949
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	5 cut(s)	37, 75, 236, 328, 507
BstV2I	GAAGAC	2 cut(s)	675, 711
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BsuI	GTATCC	2 cut(s)	512, 764
BsuRI	GGCC	2 cut(s)	284, 387
BtgZI	GCGATG	1 cut(s)	708
BtsCI	GGATG	2 cut(s)	560, 787
BtsIMutI	CAGTG	2 cut(s)	158, 880
BveI	ACCTGC	2 cut(s)	634, 996
Cac8I	GCNNGC	2 cut(s)	198, 655
CfoI	GCGC	1 cut(s)	421
Cfr10I	RCCGGY	2 cut(s)	427, 510
Cfr13I	GGNCC	1 cut(s)	273
Cfr9I	CCCGGG	1 cut(s)	269
DdeI	CTNAG	8 cut(s)	39, 54, 99, 290, 336, 492, 506, 553
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	3 cut(s)	19, 321, 491
EarI	CTCTTC	3 cut(s)	19, 321, 491
Ecl136II	GAGCTC	2 cut(s)	340, 787
Eco147I	AGGCCT	2 cut(s)	284, 387
Eco24I	GRGCYC	3 cut(s)	342, 414, 789
Eco31I	GGTCTC	3 cut(s)	42, 115, 519
Eco32I	GATATC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	273
Eco53kI	GAGCTC	2 cut(s)	340, 787
Eco57I	CTGAAG	3 cut(s)	111, 737, 977
Eco88I	CYCGRG	1 cut(s)	269
EcoICRI	GAGCTC	2 cut(s)	340, 787
EcoRV	GATATC	1 cut(s)	169
EcoT38I	GRGCYC	3 cut(s)	342, 414, 789
Esp3I	CGTCTC	1 cut(s)	815
FaiI	YATR	4 cut(s)	233, 451, 735, 870
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	1 cut(s)	592
Fnu4HI	GCNGC	7 cut(s)	51, 64, 250, 317, 364, 521, 953
FokI	GGATG	2 cut(s)	547, 794
FriOI	GRGCYC	3 cut(s)	342, 414, 789
Fsp4HI	GCNGC	7 cut(s)	51, 64, 250, 317, 364, 521, 953
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	7 cut(s)	51, 64, 250, 317, 364, 521, 953
HaeIII	GGCC	2 cut(s)	284, 387
HapII	CCGG	6 cut(s)	270, 276, 428, 511, 926, 941
HhaI	GCGC	1 cut(s)	421
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	2 cut(s)	208, 719
HinfI	GANTC	7 cut(s)	7, 27, 95, 179, 488, 922, 929
HpaII	CCGG	6 cut(s)	270, 276, 428, 511, 926, 941
HphI	GGTGA	2 cut(s)	163, 365
Hpy188III	TCNNGA	8 cut(s)	31, 81, 120, 276, 304, 505, 926, 998
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	5 cut(s)	458, 722, 822, 902, 952
HpyCH4III	ACNGT	3 cut(s)	152, 222, 875
HpyCH4V	TGCA	6 cut(s)	158, 200, 252, 316, 643, 917
HpyF10VI	GCNNNNNNNGC	1 cut(s)	418
HpyF3I	CTNAG	8 cut(s)	39, 54, 99, 290, 336, 492, 506, 553
HspAI	GCGC	1 cut(s)	419
Kpn2I	TCCGGA	2 cut(s)	275, 925
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	2 cut(s)	417, 480
Lsp1109I	GCAGC	5 cut(s)	37, 75, 236, 328, 507
LweI	GCATC	1 cut(s)	630
MaeI	CTAG	1 cut(s)	654
MaeIII	GTNAC	2 cut(s)	28, 452
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	4 cut(s)	342, 414, 789, 949
MluCI	AATT	4 cut(s)	378, 397, 680, 885
MlyI	GAGTC	2 cut(s)	36, 916
MroI	TCCGGA	2 cut(s)	275, 925
MseI	TTAA	2 cut(s)	212, 723
MspI	CCGG	6 cut(s)	270, 276, 428, 511, 926, 941
MspR9I	CCNGG	3 cut(s)	270, 271, 942
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	418
NciI	CCSGG	3 cut(s)	270, 271, 942
NdeII	GATC	1 cut(s)	348
NheI	GCTAGC	1 cut(s)	653
NlaIV	GGNNCC	5 cut(s)	274, 413, 482, 834, 946
NmuCI	GTSAC	2 cut(s)	28, 452
PaqCI	CACCTGC	1 cut(s)	996
PceI	AGGCCT	2 cut(s)	284, 387
PfeI	GAWTC	4 cut(s)	95, 179, 488, 929
PflFI	GACNNNGTC	2 cut(s)	10, 220
PflMI	CCANNNNNTGG	1 cut(s)	131
PkrI	GCNGC	7 cut(s)	52, 65, 251, 318, 365, 522, 954
PleI	GAGTC	2 cut(s)	35, 916
PpsI	GAGTC	2 cut(s)	35, 916
Psp124BI	GAGCTC	2 cut(s)	342, 789
PspN4I	GGNNCC	5 cut(s)	274, 413, 482, 834, 946
PspPI	GGNCC	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	348
PsyI	GACNNNGTC	2 cut(s)	10, 220
SacI	GAGCTC	2 cut(s)	342, 789
SaqAI	TTAA	2 cut(s)	212, 723
SatI	GCNGC	7 cut(s)	51, 64, 250, 317, 364, 521, 953
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	2 cut(s)	36, 916
ScrFI	CCNGG	3 cut(s)	270, 271, 942
SduI	GDGCHC	4 cut(s)	342, 414, 789, 949
SfaNI	GCATC	1 cut(s)	630
SfcI	CTRYAG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	273
SmaI	CCCGGG	1 cut(s)	271
SmlI	CTYRAG	2 cut(s)	236, 998
SmoI	CTYRAG	2 cut(s)	236, 998
Sse9I	AATT	4 cut(s)	378, 397, 680, 885
SseBI	AGGCCT	2 cut(s)	284, 387
SsiI	CCGC	3 cut(s)	364, 952, 991
SspI	AATATT	1 cut(s)	808
SspMI	CTAG	1 cut(s)	654
SstI	GAGCTC	2 cut(s)	342, 789
StuI	AGGCCT	2 cut(s)	284, 387
StyD4I	CCNGG	3 cut(s)	268, 269, 940
TaaI	ACNGT	3 cut(s)	152, 222, 875
TaqI	TCGA	5 cut(s)	119, 357, 486, 638, 816
TasI	AATT	4 cut(s)	378, 397, 680, 885
TauI	GCSGC	2 cut(s)	366, 955
TfiI	GAWTC	4 cut(s)	95, 179, 488, 929
Tru1I	TTAA	2 cut(s)	212, 723
Tru9I	TTAA	2 cut(s)	212, 723
TscAI	CASTG	2 cut(s)	165, 880
TseFI	GTSAC	2 cut(s)	28, 452
TseI	GCWGC	5 cut(s)	50, 63, 249, 316, 520
Tsp45I	GTSAC	2 cut(s)	28, 452
TspDTI	ATGAA	4 cut(s)	681, 711, 741, 897
TspMI	CCCGGG	1 cut(s)	269
TspRI	CASTG	2 cut(s)	165, 880
Tth111I	GACNNNGTC	2 cut(s)	10, 220
Van91I	CCANNNNNTGG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XmaI	CCCGGG	1 cut(s)	269
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.