Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007083

Physical Location & Seq

Genomic Coordinates Reverse (-)

20364446 .. 20366297

Gene Structure 1852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1246000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAGACTCCATCGTCAATCAGGAGAGTCACGAGGTCTCAGACTTCGGTCGCTCAGAACAGCAGCAACCCCCTTTCAAGAAAGACTGAAGATTCTGAGAAGGCTCTCTCGAAATCGAGACCAAGAAATGGGAAGCAACAACAAGATCGGTCTGCACTGATTGACATCACCAACGATTCTCCGATAGTTGGACTTGCAATGGGAAGCTTGGAGACTCCATCGTCGGCCATACTCAAACAGAGAAGCTGCAGAGCCAAGAACACACCTGAGTCCGGAGAGGCCTTGCTGAGAGGTCAAGTCAAGACCCTTTTGCAGCAAGTTGAAGAGGAGGCTGAGCTCTCAAAGATATCGCTCGAAAGCCGCCCTATTTGCCTTATTCAAGGCCTTATCGCCAACTCTCCGATGGGACTCCTCGCGCCAACGCCAGCGAACACGCCACAGGTCTCTGATCTCTCTGTTGGTGCAAGCGGAAGGAACAAAGTTGGTCCGAGTTGTGAGCAACCTTCAGTTGTTCAAGAACAATTAATTTCGCAGGTGGTATGTGACATCTTTGAAGGAAAAAATCAGGGGAGCCTCGAATCTCAGAAGAGTATCCTGAGCCGCTCTCTGCTGCTGGATTTCTCCGAGAAGTCTGAAATCTCCTCACTTTCATCAGAGTGCTCCTCTGTGATTACTGACAGCAAGGAGAAGTCATCATCCCCAGATGATGACAATGCATCCATCTGGTCGATGCAGGTCAATGCCAGCACCCATGATGAAGATGAGGAAGAAGCAGCCGATGACGAAGAAGACTATTATCTGAAGCTGAATGAATGTTATGGAATGGAAGAAGAAAAGGAGAAAGATGGAGGATACAATGTGGAGGAGCTTTGTGATGGCATTAGCAATATTTGCGTCAATGAGACGAGAAGGATTCCCAAGTTTGAAGGAAAGCATACCAGATTTGTGTATGACAGTGAAGATGAAATCGTTGAAGAAGAAGAAGGATCTGCAAAGACTCCGGAATCAGCTTCGCCGGGTGCCCTGCGGCTGAAGGGATTGCCAACACCAAAGGGGAAGCACCTACGGTTTCTTGAGGAGGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

363

Amino Acids

39.62

Weight (kDa)

4.67

Isoelectric Point (pI)

68.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51230 AT5G66230 AT5G66230
malus_domestica	MD02G1132500.v1.1 MD15G1246000.v1.1
prunus_persica	Prupe.7G168100_v2.0.a1
pyrus_communis	pycom02g10400 pycom15g21610
rosa_chinensis	RchiOBHm_Chr2g0099451 RchiOBHm_Chr6g0272671
rosa_laevigata	RLG00000004887 RLG00000016883
rosa_multiflora	Rmu_sc0002542.1_g000003 Rmu_sc0004888.1_g000020
rosa_roxburghii	Rroxscaffold_2G00143070
rosa_rugosa	Rorug02G0079600
rosa_samantha	Rh2AG129600 Rh2BG132700 Rh2CG133400 Rh2DG133700 Rh6AG170300 Rh6CG169700 Rh6DG179800
rosa_wichuraiana	Rw2G009980 Rw5G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	523
AasI	GACNNNNNNGTC	2 cut(s)	13, 220
Acc36I	ACCTGC	2 cut(s)	523, 724
AccB1I	GGYRCC	1 cut(s)	1019
AccB7I	CCANNNNNTGG	1 cut(s)	128
AccBSI	CCGCTC	1 cut(s)	603
AccII	CGCG	1 cut(s)	416
AccIII	TCCGGA	2 cut(s)	272, 1000
AciI	CCGC	4 cut(s)	361, 468, 601, 1027
AclWI	GGATC	1 cut(s)	994
AcoI	YGGCCR	1 cut(s)	225
AcuI	CTGAAG	4 cut(s)	108, 489, 821, 1052
AfiI	CCNNNNNNNGG	3 cut(s)	128, 188, 272
AgsI	TTSAA	7 cut(s)	78, 323, 380, 515, 554, 926, 974
AluBI	AGCT	6 cut(s)	207, 246, 337, 805, 868, 1010
AluI	AGCT	6 cut(s)	207, 246, 337, 805, 868, 1010
Alw21I	GWGCWC	2 cut(s)	339, 662
Alw26I	GTCTC	5 cut(s)	42, 112, 206, 448, 896
AlwI	GGATC	1 cut(s)	994
Aor13HI	TCCGGA	2 cut(s)	272, 1000
AoxI	GGCC	3 cut(s)	225, 279, 382
ApeKI	GCWGC	5 cut(s)	63, 246, 313, 610, 773
AseI	ATTAAT	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	1 cut(s)	485
AsuC2I	CCSGG	1 cut(s)	1017
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	1024
BanI	GGYRCC	1 cut(s)	1019
BanII	GRGCYC	1 cut(s)	339
BauI	CACGAG	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	795
Bbv12I	GWGCWC	2 cut(s)	339, 662
BbvI	GCAGC	5 cut(s)	75, 233, 325, 597, 785
BccI	CCATC	6 cut(s)	19, 226, 397, 728, 839, 869
BciVI	GTATCC	2 cut(s)	602, 845
BcnI	CCSGG	1 cut(s)	1017
BcoDI	GTCTC	5 cut(s)	42, 112, 206, 448, 896
BfmI	CTRYAG	1 cut(s)	247
BfuAI	ACCTGC	2 cut(s)	523, 724
BfuI	GTATCC	2 cut(s)	602, 845
BisI	GCNGC	8 cut(s)	64, 247, 314, 361, 601, 611, 774, 1028
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	8 cut(s)	65, 248, 315, 362, 602, 612, 775, 1029
Bme1390I	CCNGG	1 cut(s)	1017
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	572, 1021
BmrFI	CCNGG	1 cut(s)	1017
BmsI	GCATC	2 cut(s)	720, 725
BoxI	GACNNNNGTC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	795
BplI	GAGNNNNNCTC	4 cut(s)	589, 621, 647, 679
Bpu10I	CCTNAGC	1 cut(s)	596
Bpu1102I	GCTNAGC	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	1017
BsaBI	GATNNNNATC	1 cut(s)	164
BsaI	GGTCTC	3 cut(s)	42, 112, 448
BsaWI	WCCGGW	2 cut(s)	272, 1000
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 188, 272
Bse3DI	GCAATG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	164
BseAI	TCCGGA	2 cut(s)	272, 1000
BseGI	GGATG	2 cut(s)	695, 716
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	3 cut(s)	128, 188, 272
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	8 cut(s)	53, 68, 87, 258, 278, 324, 587, 596
BseRI	GAGGAG	5 cut(s)	341, 401, 631, 652, 878
BseSI	GKGCMC	1 cut(s)	1024
BseXI	GCAGC	5 cut(s)	75, 233, 325, 597, 785
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	227, 281, 384
BshNI	GGYRCC	1 cut(s)	1019
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	339, 662
BsiSI	CCGG	3 cut(s)	273, 1001, 1016
BslFI	GGGAC	1 cut(s)	420
BslI	CCNNNNNNNGG	3 cut(s)	128, 188, 272
BsmAI	GTCTC	5 cut(s)	42, 112, 206, 448, 896
BsmBI	CGTCTC	1 cut(s)	896
BsmFI	GGGAC	1 cut(s)	420
BsnI	GGCC	3 cut(s)	227, 281, 384
Bso31I	GGTCTC	3 cut(s)	42, 112, 448
Bsp1286I	GDGCHC	3 cut(s)	339, 662, 1024
Bsp13I	TCCGGA	2 cut(s)	272, 1000
Bsp143I	GATC	3 cut(s)	145, 448, 986
Bsp1720I	GCTNAGC	1 cut(s)	333
BspACI	CCGC	4 cut(s)	361, 468, 601, 1027
BspANI	GGCC	3 cut(s)	227, 281, 384
BspCNI	CTCAG	8 cut(s)	52, 67, 88, 259, 279, 325, 588, 595
BspEI	TCCGGA	2 cut(s)	272, 1000
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	2 cut(s)	572, 1021
BspMAI	CTGCAG	1 cut(s)	251
BspMI	ACCTGC	2 cut(s)	523, 724
BspPI	GGATC	1 cut(s)	994
BspT107I	GGYRCC	1 cut(s)	1019
BspTNI	GGTCTC	3 cut(s)	42, 112, 448
BsrBI	CCGCTC	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	204
BssMI	GATC	3 cut(s)	145, 448, 986
BssSI	CACGAG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	956, 1068
Bst6I	CTCTTC	2 cut(s)	318, 581
BstAPI	GCANNNNNTGC	1 cut(s)	891
BstC8I	GCNNGC	3 cut(s)	426, 466, 745
BstDEI	CTNAG	8 cut(s)	39, 54, 96, 267, 287, 333, 582, 596
BstF5I	GGATG	2 cut(s)	695, 716
BstFNI	CGCG	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	3 cut(s)	148, 451, 989
BstMAI	GTCTC	5 cut(s)	42, 112, 206, 448, 896
BstMBI	GATC	3 cut(s)	145, 448, 986
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	369, 891
BstPAI	GACNNNNGTC	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	1015
BstSFI	CTRYAG	1 cut(s)	247
BstSLI	GKGCMC	1 cut(s)	1024
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	5 cut(s)	75, 233, 325, 597, 785
BstV2I	GAAGAC	1 cut(s)	795
BstX2I	RGATCY	1 cut(s)	986
BstYI	RGATCY	1 cut(s)	986
BsuI	GTATCC	2 cut(s)	602, 845
BsuRI	GGCC	3 cut(s)	227, 281, 384
BtsCI	GGATG	2 cut(s)	695, 716
BtsIMutI	CAGTG	2 cut(s)	155, 961
BveI	ACCTGC	2 cut(s)	523, 724
Cac8I	GCNNGC	3 cut(s)	426, 466, 745
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	485
CseI	GACGC	1 cut(s)	883
CviAII	CATG	1 cut(s)	752
DdeI	CTNAG	8 cut(s)	39, 54, 96, 267, 287, 333, 582, 596
DpnI	GATC	3 cut(s)	147, 450, 988
DpnII	GATC	3 cut(s)	145, 448, 986
DrdI	GACNNNNNNGTC	2 cut(s)	13, 220
DseDI	GACNNNNNNGTC	2 cut(s)	13, 220
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	318, 581
EarI	CTCTTC	2 cut(s)	318, 581
Ecl136II	GAGCTC	1 cut(s)	337
Eco147I	AGGCCT	2 cut(s)	281, 384
Eco24I	GRGCYC	1 cut(s)	339
Eco31I	GGTCTC	3 cut(s)	42, 112, 448
Eco32I	GATATC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	485
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	4 cut(s)	108, 489, 821, 1052
EcoICRI	GAGCTC	1 cut(s)	337
EcoRV	GATATC	1 cut(s)	348
EcoT22I	ATGCAT	1 cut(s)	718
EcoT38I	GRGCYC	1 cut(s)	339
Esp3I	CGTCTC	1 cut(s)	896
FaeI	CATG	1 cut(s)	755
FaiI	YATR	6 cut(s)	230, 541, 753, 819, 936, 951
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	1 cut(s)	751
Fnu4HI	GCNGC	8 cut(s)	64, 247, 314, 361, 601, 611, 774, 1028
FokI	GGATG	2 cut(s)	682, 703
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	8 cut(s)	64, 247, 314, 361, 601, 611, 774, 1028
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	8 cut(s)	64, 247, 314, 361, 601, 611, 774, 1028
HaeIII	GGCC	3 cut(s)	227, 281, 384
HapII	CCGG	3 cut(s)	273, 1001, 1016
HgaI	GACGC	1 cut(s)	883
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	1 cut(s)	755
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HindIII	AAGCTT	1 cut(s)	205
HpaII	CCGG	3 cut(s)	273, 1001, 1016
HphI	GGTGA	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	8 cut(s)	94, 465, 513, 548, 903, 920, 977, 1027
HpyCH4III	ACNGT	2 cut(s)	956, 1068
HpyCH4V	TGCA	8 cut(s)	155, 197, 249, 313, 464, 716, 733, 992
HpyF10VI	GCNNNNNNNGC	2 cut(s)	369, 891
HpyF3I	CTNAG	8 cut(s)	39, 54, 96, 267, 287, 333, 582, 596
Hsp92II	CATG	1 cut(s)	755
HspAI	GCGC	1 cut(s)	416
Kpn2I	TCCGGA	2 cut(s)	272, 1000
Kzo9I	GATC	3 cut(s)	145, 448, 986
LmnI	GCTCC	3 cut(s)	570, 665, 865
Lsp1109I	GCAGC	5 cut(s)	75, 233, 325, 597, 785
LweI	GCATC	2 cut(s)	720, 725
MaeIII	GTNAC	2 cut(s)	28, 542
MalI	GATC	3 cut(s)	147, 450, 988
MbiI	CCGCTC	1 cut(s)	603
MboI	GATC	3 cut(s)	145, 448, 986
MflI	RGATCY	1 cut(s)	986
MhlI	GDGCHC	3 cut(s)	339, 662, 1024
MluCI	AATT	2 cut(s)	521, 525
MlyI	GAGTC	5 cut(s)	36, 208, 278, 402, 991
MmeI	TCCRAC	1 cut(s)	169
Mph1103I	ATGCAT	1 cut(s)	718
MroI	TCCGGA	2 cut(s)	272, 1000
MseI	TTAA	1 cut(s)	524
MslI	CAYNNNNRTG	1 cut(s)	655
MspI	CCGG	3 cut(s)	273, 1001, 1016
MspR9I	CCNGG	1 cut(s)	1017
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	369, 891
NciI	CCSGG	1 cut(s)	1017
NdeII	GATC	3 cut(s)	145, 448, 986
NlaIII	CATG	1 cut(s)	755
NlaIV	GGNNCC	2 cut(s)	572, 1021
NmuCI	GTSAC	2 cut(s)	28, 542
NsiI	ATGCAT	1 cut(s)	718
PaqCI	CACCTGC	1 cut(s)	523
PceI	AGGCCT	2 cut(s)	281, 384
PfeI	GAWTC	5 cut(s)	92, 176, 578, 913, 1004
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	8 cut(s)	65, 248, 315, 362, 602, 612, 775, 1029
PleI	GAGTC	5 cut(s)	35, 208, 277, 402, 991
PpsI	GAGTC	5 cut(s)	35, 208, 277, 402, 991
PshAI	GACNNNNGTC	1 cut(s)	47
PshBI	ATTAAT	1 cut(s)	524
Psp124BI	GAGCTC	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	572, 1021
PspPI	GGNCC	1 cut(s)	485
PstI	CTGCAG	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	986
RseI	CAYNNNNRTG	1 cut(s)	655
SacI	GAGCTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	8 cut(s)	64, 247, 314, 361, 601, 611, 774, 1028
Sau3AI	GATC	3 cut(s)	145, 448, 986
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	5 cut(s)	36, 208, 278, 402, 991
ScrFI	CCNGG	1 cut(s)	1017
SduI	GDGCHC	3 cut(s)	339, 662, 1024
SfaNI	GCATC	2 cut(s)	720, 725
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	655
SmlI	CTYRAG	1 cut(s)	1073
SmoI	CTYRAG	1 cut(s)	1073
Sse9I	AATT	2 cut(s)	521, 525
SseBI	AGGCCT	2 cut(s)	281, 384
SsiI	CCGC	4 cut(s)	361, 468, 601, 1027
SspI	AATATT	1 cut(s)	889
SstI	GAGCTC	1 cut(s)	339
StuI	AGGCCT	2 cut(s)	281, 384
StyD4I	CCNGG	1 cut(s)	1015
TaaI	ACNGT	2 cut(s)	956, 1068
TaqI	TCGA	5 cut(s)	110, 116, 354, 576, 728
TaqII	GACCGA	2 cut(s)	37, 138
TasI	AATT	2 cut(s)	521, 525
TauI	GCSGC	3 cut(s)	363, 603, 1030
TfiI	GAWTC	5 cut(s)	92, 176, 578, 913, 1004
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	2 cut(s)	162, 961
TseFI	GTSAC	2 cut(s)	28, 542
TseI	GCWGC	5 cut(s)	63, 246, 313, 610, 773
Tsp45I	GTSAC	2 cut(s)	28, 542
TspDTI	ATGAA	4 cut(s)	639, 771, 825, 978
TspRI	CASTG	2 cut(s)	162, 961
Van91I	CCANNNNNTGG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	485
VspI	ATTAAT	1 cut(s)	524
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
Zsp2I	ATGCAT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.