RchiOBHm_Chr6g0272671

chalcone-flavanone isomerase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0007083
Physical Location & Seq
Reverse (-)
33051485 .. 33055000
3516 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24463

Sequence Viewer

Length: 579 bp
ATGTGTGGTCAACGACGATTGGGATCCGGTATCGGCGGCGACGTGACAACCCTGGTGGTGGCTCTTGTTTGGAGCTCAATTCATGGCCTTCTCTTCTCTGATCGACATAACCAACGATTCTTCGATAGTGGGGGTTGCGATGCAGATGCCATCATCGGTCGTCCTGTGAAACTAAGGAGCATCCGAGTGAAGACCACACTGGGTTCCGGCGAGGCTTTGTTGAGAGGTCAAGTCAAGACCCTGTTGCAACAAGTGGAGGAAGAGGCCTCTGTCTCTAAGTTCTCTTTCGAAAACCGACCTTTTCGACATCTTCAAGGCCTTATTGGGAAAACGCTGACAGGACTTCTTGCCCCAACTCTGGCGAACACGCCGCAGGTGAATGATCTCTTGGTTGATAGAAGTGGGAGTAACATTGAGAGACCCTCTCCTCTAGTCCAAGAACAATTGATCTCTCAGGTGGTATGTGACATCTTTGAAGGAAAGAATCAAGGGAGCCTTGAATCACAAAAGAGTATCGTAAGTCGTTCTCTGCTACTTGATTTCTCTGAGAAATCTGAAATCTCATTCTCTTCTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

20.91

Weight (kDa)

8.52

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 364
Acc36I ACCTGC 1 cut(s) 364
AciI CCGC 2 cut(s) 36, 371
AclWI GGATC 2 cut(s) 18, 31
AfiI CCNNNNNNNGG 2 cut(s) 58, 358
AgsI TTSAA 3 cut(s) 314, 476, 500
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 51
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 2 cut(s) 277, 412
AlwI GGATC 2 cut(s) 18, 31
AoxI GGCC 3 cut(s) 85, 264, 316
AsuHPI GGTGA 1 cut(s) 388
AsuII TTCGAA 1 cut(s) 288
BamHI GGATCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 77
BccI CCATC 1 cut(s) 158
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 277, 412
BfaI CTAG 1 cut(s) 431
BfuAI ACCTGC 1 cut(s) 364
BisI GCNGC 2 cut(s) 37, 371
BlsI GCNGC 2 cut(s) 38, 372
Bme1390I CCNGG 1 cut(s) 53
BmgBI CACGTC 1 cut(s) 43
BmiI GGNNCC 3 cut(s) 25, 205, 494
BmrFI CCNGG 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 3 cut(s) 130, 136, 189
BmuI ACTGGG 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 197
BplI GAGNNNNNCTC 4 cut(s) 407, 439, 409, 441
Bpu14I TTCGAA 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 358
Bse1I ACTGG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 22
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 180
BseJI GATNNNNATC 1 cut(s) 22
BseLI CCNNNNNNNGG 2 cut(s) 58, 358
BseMII CTCAG 2 cut(s) 467, 537
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 417
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 3 cut(s) 87, 266, 318
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 2 cut(s) 27, 207
BslI CCNNNNNNNGG 2 cut(s) 58, 358
BsmAI GTCTC 2 cut(s) 277, 412
BsnI GGCC 3 cut(s) 87, 266, 318
Bso31I GGTCTC 1 cut(s) 412
Bsp119I TTCGAA 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 4 cut(s) 23, 100, 382, 447
BspACI CCGC 2 cut(s) 36, 371
BspANI GGCC 3 cut(s) 87, 266, 318
BspCNI CTCAG 2 cut(s) 466, 538
BspLI GGNNCC 3 cut(s) 25, 205, 494
BspMI ACCTGC 1 cut(s) 364
BspPI GGATC 2 cut(s) 18, 31
BspT104I TTCGAA 1 cut(s) 288
BspTNI GGTCTC 1 cut(s) 412
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 4 cut(s) 23, 100, 382, 447
Bst2UI CCWGG 1 cut(s) 53
Bst6I CTCTTC 3 cut(s) 98, 255, 574
BstBI TTCGAA 1 cut(s) 288
BstDEI CTNAG 4 cut(s) 173, 276, 453, 546
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 4 cut(s) 26, 103, 385, 450
BstMAI GTCTC 2 cut(s) 277, 412
BstMBI GATC 4 cut(s) 23, 100, 382, 447
BstMCI CGRYCG 1 cut(s) 160
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 3 cut(s) 87, 266, 318
BtgZI GCGATG 1 cut(s) 153
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 197
BveI ACCTGC 1 cut(s) 364
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 1 cut(s) 83
CviJI RGCY 7 cut(s) 62, 75, 87, 215, 266, 318, 495
CviKI_1 RGCY 7 cut(s) 62, 75, 87, 215, 266, 318, 495
DdeI CTNAG 4 cut(s) 173, 276, 453, 546
DpnI GATC 4 cut(s) 25, 102, 384, 449
DpnII GATC 4 cut(s) 23, 100, 382, 447
Eam1104I CTCTTC 3 cut(s) 98, 255, 574
EarI CTCTTC 3 cut(s) 98, 255, 574
Ecl136II GAGCTC 1 cut(s) 75
Eco147I AGGCCT 2 cut(s) 266, 318
Eco24I GRGCYC 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 1 cut(s) 86
FaiI YATR 3 cut(s) 84, 108, 463
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 37, 371
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 37, 371
FspBI CTAG 1 cut(s) 431
GluI GCNGC 2 cut(s) 37, 371
HaeIII GGCC 3 cut(s) 87, 266, 318
HapII CCGG 2 cut(s) 27, 207
Hin1II CATG 1 cut(s) 86
HincII GTYRAC 1 cut(s) 11
HindII GTYRAC 1 cut(s) 11
HinfI GANTC 3 cut(s) 117, 484, 500
HpaII CCGG 2 cut(s) 27, 207
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 4 cut(s) 100, 185, 547, 556
Hpy188III TCNNGA 1 cut(s) 235
Hpy8I GTNNAC 1 cut(s) 11
Hpy99I CGWCG 2 cut(s) 18, 44
HpyAV CCTTC 2 cut(s) 98, 470
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 2 cut(s) 143, 247
HpyF3I CTNAG 4 cut(s) 173, 276, 453, 546
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 4 cut(s) 23, 100, 382, 447
LmnI GCTCC 3 cut(s) 72, 177, 492
LweI GCATC 3 cut(s) 130, 136, 189
MaeI CTAG 1 cut(s) 431
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 3 cut(s) 43, 407, 464
MalI GATC 4 cut(s) 25, 102, 384, 449
MboI GATC 4 cut(s) 23, 100, 382, 447
MboII GAAGA 6 cut(s) 85, 112, 202, 272, 302, 561
MfeI CAATTG 1 cut(s) 443
MflI RGATCY 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 2 cut(s) 78, 443
MnlI CCTC 7 cut(s) 205, 218, 250, 256, 277, 433, 438
MslI CAYNNNNRTG 1 cut(s) 185
MspI CCGG 2 cut(s) 27, 207
MspR9I CCNGG 1 cut(s) 53
MunI CAATTG 1 cut(s) 443
MvaI CCWGG 1 cut(s) 53
NdeII GATC 4 cut(s) 23, 100, 382, 447
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 3 cut(s) 25, 205, 494
NmuCI GTSAC 2 cut(s) 43, 464
NspV TTCGAA 1 cut(s) 288
PaqCI CACCTGC 1 cut(s) 364
PceI AGGCCT 2 cut(s) 266, 318
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 3 cut(s) 117, 484, 500
PkrI GCNGC 2 cut(s) 38, 372
Psp124BI GAGCTC 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 3 cut(s) 25, 205, 494
PsuI RGATCY 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 77
SatI GCNGC 2 cut(s) 37, 371
Sau3AI GATC 4 cut(s) 23, 100, 382, 447
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 1 cut(s) 77
SetI ASST 6 cut(s) 45, 77, 229, 301, 378, 459
SfaNI GCATC 3 cut(s) 130, 136, 189
SfuI TTCGAA 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 2 cut(s) 78, 443
SseBI AGGCCT 2 cut(s) 266, 318
SsiI CCGC 2 cut(s) 36, 371
SspMI CTAG 1 cut(s) 431
SstI GAGCTC 1 cut(s) 77
StuI AGGCCT 2 cut(s) 266, 318
StyD4I CCNGG 1 cut(s) 51
TaiI ACGT 1 cut(s) 45
TaqI TCGA 4 cut(s) 103, 123, 288, 304
TaqII GACCGA 1 cut(s) 146
TasI AATT 2 cut(s) 78, 443
TauI GCSGC 2 cut(s) 39, 373
TfiI GAWTC 3 cut(s) 117, 484, 500
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 2 cut(s) 43, 464
Tsp45I GTSAC 2 cut(s) 43, 464
TspDTI ATGAA 1 cut(s) 71
TspRI CASTG 1 cut(s) 204
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.