Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007083

Physical Location & Seq

Genomic Coordinates Reverse (-)

23176625 .. 23201745

Gene Structure 25121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG169700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCCAAGCCAATTCTTGATGAAACAAAGAAGAAACAAATGAAAACAACAAGAGTAAGATTTGCGAGGAACATCCGAGTGAAGACCACACTGGGTTCTGGCGAGGCTTTGTTGAGAGGTCAAGTCAAGACCCTGTTGCAACAAGTGGAGGAAGAGGCCTCTGTCTCTAAGTTCTCTTTCGAAAACCGACCTTTTCGACATCTTCAAGGCCTTGTTGGGAAAACGCTGACAGGACTTCTTGCCCCAACTCTGGCGAACATGCCGCAGCTGAAATCAATTGGGAAGCACGAACAAACATGTGGTGACTCTCTATCCTCTACATCAAAGGGGAAGAAGGTATTGATGGCAGCAGGGATATGTTTCGAGCTGCTGCCGGTGACCAACTGGAGATATATATGGGCTGAGAGGACTAGCTGTGAGATAGTTGTGGCTGAAAAAGAGAAGGCCAAAGCAGCAACAGGTGATGACAAGCCAAGAAGTTGTGGATGCCATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.26

Weight (kDa)

9.79

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51230 AT5G66230 AT5G66230
malus_domestica	MD02G1132500.v1.1 MD15G1246000.v1.1
prunus_persica	Prupe.7G168100_v2.0.a1
pyrus_communis	pycom02g10400 pycom15g21610
rosa_chinensis	RchiOBHm_Chr2g0099451 RchiOBHm_Chr6g0272671
rosa_laevigata	RLG00000004887 RLG00000016883
rosa_multiflora	Rmu_sc0002542.1_g000003 Rmu_sc0004888.1_g000020
rosa_roxburghii	Rroxscaffold_2G00143070
rosa_rugosa	Rorug02G0079600
rosa_samantha	Rh2AG129600 Rh2BG132700 Rh2CG133400 Rh2DG133700 Rh6AG170300 Rh6CG169700 Rh6DG179800
rosa_wichuraiana	Rw2G009980 Rw5G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	206
AluBI	AGCT	3 cut(s)	268, 367, 414
AluI	AGCT	3 cut(s)	268, 367, 414
Alw26I	GTCTC	1 cut(s)	169
AoxI	GGCC	4 cut(s)	3, 156, 208, 444
ApeKI	GCWGC	5 cut(s)	265, 347, 367, 370, 452
AsuHPI	GGTGA	3 cut(s)	314, 388, 473
AsuII	TTCGAA	1 cut(s)	180
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	89
BbvI	GCAGC	5 cut(s)	277, 354, 357, 359, 464
BccI	CCATC	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	411
BisI	GCNGC	6 cut(s)	263, 266, 348, 368, 371, 453
BlsI	GCNGC	6 cut(s)	264, 267, 349, 369, 372, 454
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	406
Bpu14I	TTCGAA	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	96, 389
BseGI	GGATG	2 cut(s)	72, 491
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	96, 389
BseXI	GCAGC	5 cut(s)	277, 354, 357, 359, 464
BshFI	GGCC	4 cut(s)	5, 158, 210, 446
BsiSI	CCGG	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	4 cut(s)	5, 158, 210, 446
Bsp119I	TTCGAA	1 cut(s)	180
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	4 cut(s)	5, 158, 210, 446
BspCNI	CTCAG	1 cut(s)	394
BspT104I	TTCGAA	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	96, 389
BssAI	RCCGGY	1 cut(s)	373
Bst6I	CTCTTC	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	168, 402
BstEII	GGTNACC	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	72, 491
BstMAI	GTCTC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNSI	RCATGY	2 cut(s)	262, 300
BstPI	GGTNACC	1 cut(s)	376
BstV1I	GCAGC	5 cut(s)	277, 354, 357, 359, 464
BstV2I	GAAGAC	1 cut(s)	89
BsuRI	GGCC	4 cut(s)	5, 158, 210, 446
BtsCI	GGATG	2 cut(s)	72, 491
BtsIMutI	CAGTG	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	373
CviAII	CATG	2 cut(s)	259, 297
DdeI	CTNAG	2 cut(s)	168, 402
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco147I	AGGCCT	2 cut(s)	158, 210
Eco91I	GGTNACC	1 cut(s)	376
EcoO65I	GGTNACC	1 cut(s)	376
FaeI	CATG	2 cut(s)	262, 300
FaiI	YATR	7 cut(s)	260, 298, 358, 393, 395, 397, 492
FatI	CATG	2 cut(s)	258, 296
Fnu4HI	GCNGC	6 cut(s)	263, 266, 348, 368, 371, 453
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	6 cut(s)	263, 266, 348, 368, 371, 453
FspBI	CTAG	1 cut(s)	411
GluI	GCNGC	6 cut(s)	263, 266, 348, 368, 371, 453
GsuI	CTGGAG	1 cut(s)	406
HaeIII	GGCC	4 cut(s)	5, 158, 210, 446
HapII	CCGG	1 cut(s)	374
Hin1II	CATG	2 cut(s)	262, 300
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	3 cut(s)	314, 388, 473
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	2 cut(s)	17, 127
HpyAV	CCTTC	2 cut(s)	328, 436
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	2 cut(s)	168, 402
Hsp92II	CATG	2 cut(s)	262, 300
LpnPI	CCDG	9 cut(s)	77, 84, 146, 216, 236, 336, 370, 387, 444
Lsp1109I	GCAGC	5 cut(s)	277, 354, 357, 359, 464
LweI	GCATC	1 cut(s)	476
MaeI	CTAG	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	302, 376
MboII	GAAGA	5 cut(s)	43, 94, 164, 194, 343
MfeI	CAATTG	1 cut(s)	276
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	12, 276
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	8 cut(s)	60, 97, 110, 142, 148, 169, 325, 399
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	1 cut(s)	374
MunI	CAATTG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	452
NlaIII	CATG	2 cut(s)	262, 300
NmuCI	GTSAC	2 cut(s)	302, 376
NspI	RCATGY	2 cut(s)	262, 300
NspV	TTCGAA	1 cut(s)	180
PceI	AGGCCT	2 cut(s)	158, 210
PciI	ACATGT	1 cut(s)	296
PkrI	GCNGC	6 cut(s)	264, 267, 349, 369, 372, 454
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PscI	ACATGT	1 cut(s)	296
PspEI	GGTNACC	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	77
SatI	GCNGC	6 cut(s)	263, 266, 348, 368, 371, 453
SchI	GAGTC	1 cut(s)	299
SetI	ASST	7 cut(s)	121, 193, 270, 339, 369, 416, 463
SfaNI	GCATC	1 cut(s)	476
SfuI	TTCGAA	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	2 cut(s)	12, 276
SseBI	AGGCCT	2 cut(s)	158, 210
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	411
StuI	AGGCCT	2 cut(s)	158, 210
TaqI	TCGA	3 cut(s)	180, 196, 363
TasI	AATT	2 cut(s)	12, 276
TauI	GCSGC	1 cut(s)	265
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	2 cut(s)	302, 376
TseI	GCWGC	5 cut(s)	265, 347, 367, 370, 452
Tsp45I	GTSAC	2 cut(s)	302, 376
TspDTI	ATGAA	2 cut(s)	36, 56
TspRI	CASTG	1 cut(s)	96
XceI	RCATGY	2 cut(s)	262, 300
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.