Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007083

Physical Location & Seq

Genomic Coordinates Reverse (-)

34979344 .. 34979721

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G024610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAATTGGGCATGAGAGCTTTGTGTTTGTGGTGGTGGGTGATGTGTGGTCAACGACGATTGGGGTCCGGTATCGGCGGCGACGTGACGACCCTGGTGGTGGCTCTTGTTTGGAGCTCAATTCATGGCCTTCTTTTCTCTGATCGACATAACCAACGATTCTCCGATAGTGGGGGTTGCGATGCAGACGCCATCATCGGTCGTCCTGTGAAACTAAGGAGCATCCGAGTGAAGACCACACTGGGTTCCGGCGAGGCTTTGTTGAGAGGTCAAGTCAAGACCCTGTTGCAACAAGTGGAGGAAGAGGCCTCTGTCTCTAAGTTCTCTTTCGAAACCGACCTTTTCGACATCTTCAAGGCCTTATTGGGAAAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.84

Weight (kDa)

8.99

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51230 AT5G66230 AT5G66230
malus_domestica	MD02G1132500.v1.1 MD15G1246000.v1.1
prunus_persica	Prupe.7G168100_v2.0.a1
pyrus_communis	pycom02g10400 pycom15g21610
rosa_chinensis	RchiOBHm_Chr2g0099451 RchiOBHm_Chr6g0272671
rosa_laevigata	RLG00000004887 RLG00000016883
rosa_multiflora	Rmu_sc0002542.1_g000003 Rmu_sc0004888.1_g000020
rosa_roxburghii	Rroxscaffold_2G00143070
rosa_rugosa	Rorug02G0079600
rosa_samantha	Rh2AG129600 Rh2BG132700 Rh2CG133400 Rh2DG133700 Rh6AG170300 Rh6CG169700 Rh6DG179800
rosa_wichuraiana	Rw2G009980 Rw5G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	100, 171
AgsI	TTSAA	1 cut(s)	355
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	2 cut(s)	20, 117
AluI	AGCT	2 cut(s)	20, 117
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	319
AoxI	GGCC	3 cut(s)	127, 306, 357
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	52
AsuII	TTCGAA	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	119
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	319
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	66
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	67, 247
BmrFI	CCNGG	1 cut(s)	95
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	172, 231
BmuI	ACTGGG	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 171
Bse1I	ACTGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	100, 171
BseNI	ACTGG	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	129, 308, 359
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	69, 249
BslI	CCNNNNNNNGG	2 cut(s)	100, 171
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	3 cut(s)	129, 308, 359
Bsp119I	TTCGAA	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	3 cut(s)	129, 308, 359
BspLI	GGNNCC	2 cut(s)	67, 247
BspT104I	TTCGAA	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	142
BssNI	GRCGYC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	189
BstBI	TTCGAA	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	215, 318
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	142
BstMCI	CGRYCG	1 cut(s)	202
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	93
BstV2I	GAAGAC	1 cut(s)	239
BsuRI	GGCC	3 cut(s)	129, 308, 359
BtgZI	GCGATG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	66
CseI	GACGC	1 cut(s)	197
CviAII	CATG	2 cut(s)	13, 125
CviJI	RGCY	7 cut(s)	20, 104, 117, 129, 257, 308, 359
CviKI_1	RGCY	7 cut(s)	20, 104, 117, 129, 257, 308, 359
DdeI	CTNAG	2 cut(s)	215, 318
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	117
Eco147I	AGGCCT	2 cut(s)	308, 359
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	2 cut(s)	16, 128
FaiI	YATR	3 cut(s)	14, 126, 150
FatI	CATG	2 cut(s)	12, 124
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	79
HaeIII	GGCC	3 cut(s)	129, 308, 359
HapII	CCGG	2 cut(s)	69, 249
HgaI	GACGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	16, 128
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	2 cut(s)	69, 249
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	3 cut(s)	142, 166, 227
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	53
Hpy99I	CGWCG	2 cut(s)	60, 86
HpyAV	CCTTC	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	2 cut(s)	185, 289
HpyF3I	CTNAG	2 cut(s)	215, 318
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	16, 128
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	2 cut(s)	114, 219
LpnPI	CCDG	7 cut(s)	80, 82, 107, 219, 227, 262, 296
LweI	GCATC	2 cut(s)	172, 231
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	3 cut(s)	244, 314, 343
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	2 cut(s)	5, 120
MnlI	CCTC	5 cut(s)	247, 260, 292, 298, 319
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	2 cut(s)	69, 249
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	16, 128
NlaIV	GGNNCC	2 cut(s)	67, 247
NmuCI	GTSAC	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	330
PceI	AGGCCT	2 cut(s)	308, 359
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	67, 247
PspPI	GGNCC	1 cut(s)	66
RseI	CAYNNNNRTG	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	119
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	5 cut(s)	22, 87, 119, 271, 342
SfaNI	GCATC	2 cut(s)	172, 231
SfuI	TTCGAA	1 cut(s)	330
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	5, 120
SseBI	AGGCCT	2 cut(s)	308, 359
SsiI	CCGC	1 cut(s)	78
SstI	GAGCTC	1 cut(s)	119
StuI	AGGCCT	2 cut(s)	308, 359
StyD4I	CCNGG	1 cut(s)	93
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	145, 330, 345
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	2 cut(s)	5, 120
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	159
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.