Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007083

Physical Location & Seq

Genomic Coordinates Reverse (-)

63401292 .. 63406455

Gene Structure 5164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGTCACTCACATTTTGATCGTTGGACTCACCTGTGGGTTCATTTTGGTTCGGGTAGTTGCTATTCTTCTGTAAAGGTTGGGTCTTGTAGACAGATTTCTGTTTGGGTCCGCTGCTCCGACTGTTCTCTTTTGGGAGCTGCGACGCAGACACCGTCATTGGCGATTATGAAACTGAGAAGCATCCGAGCCAAGACCACACAGGGTTCCGGCGAGGTTTTGTTGAGAGGTCAAGTCAAGACCCTGTTGCAACAAGAGGAGGAAGAGGCCGAGGTCTCTAAGTTCTCTTTCGAAAACCGGCCTTTTCGACATCTTCAAGGCCTTATTGGGAACTCGCCGACCAAACTTCTTGCCCCAACTCCGGCGAACACGCCGCGGGTGAATGATCTCTCAGTTGATGGAAGTGGGAGTAACATTGAGAGACCCTCTACTCTGTATATAGATGAGACAAAGTGCACTGATAGTCATGGACGCAAAATGTTCTTGAACTTCATAAGAAACAGTTTGAAGCGGCGCAGGAAAGAAAAATGCAACTTGGACAATTTGGGGATTCGAATGAGGTACAATGGAGGTGCTGGTACCATGAAGAACTGCTTGGGTTTCGCCCTAGAGAGAAACGTCATAGAGTTGGATATATGCGTAAGGAGAGTACCTAGGGAAGCTCTTATATTTCCAGAAAAGATGAGAAGCAAATGCTCTCCACCATTACCAACTCTTGAGCATCTTCAGGTAGAGATAAGTGGTAAATCTACAATAGCAGTGACAGATTCTGTCTTGAGGGACTCCTTGCAATGGATGGCACCGTCTTCTGAAGTTTCTATCGACAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

31.01

Weight (kDa)

9.44

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51230 AT5G66230 AT5G66230
malus_domestica	MD02G1132500.v1.1 MD15G1246000.v1.1
prunus_persica	Prupe.7G168100_v2.0.a1
pyrus_communis	pycom02g10400 pycom15g21610
rosa_chinensis	RchiOBHm_Chr2g0099451 RchiOBHm_Chr6g0272671
rosa_laevigata	RLG00000004887 RLG00000016883
rosa_multiflora	Rmu_sc0002542.1_g000003 Rmu_sc0004888.1_g000020
rosa_roxburghii	Rroxscaffold_2G00143070
rosa_rugosa	Rorug02G0079600
rosa_samantha	Rh2AG129600 Rh2BG132700 Rh2CG133400 Rh2DG133700 Rh6AG170300 Rh6CG169700 Rh6DG179800
rosa_wichuraiana	Rw2G009980 Rw5G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	578
AccB1I	GGYRCC	2 cut(s)	578, 799
AccI	GTMKAC	1 cut(s)	91
AccII	CGCG	1 cut(s)	376
AciI	CCGC	4 cut(s)	112, 374, 376, 511
AcuI	CTGAAG	2 cut(s)	710, 831
AfaI	GTAC	3 cut(s)	563, 580, 651
AfiI	CCNNNNNNNGG	2 cut(s)	361, 792
AgsI	TTSAA	3 cut(s)	317, 487, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AluBI	AGCT	2 cut(s)	140, 662
AluI	AGCT	2 cut(s)	140, 662
Alw21I	GWGCWC	1 cut(s)	458
Alw26I	GTCTC	3 cut(s)	280, 415, 440
Alw44I	GTGCAC	1 cut(s)	454
AlwNI	CAGNNNCTG	1 cut(s)	770
AoxI	GGCC	3 cut(s)	267, 299, 319
ApaLI	GTGCAC	1 cut(s)	454
ApeKI	GCWGC	2 cut(s)	114, 140
Asp718I	GGTACC	1 cut(s)	578
AspA2I	CCTAGG	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	23, 391
AsuII	TTCGAA	2 cut(s)	291, 553
AvaII	GGWCC	1 cut(s)	109
AvrII	CCTAGG	1 cut(s)	653
BaeGI	GKGCMC	1 cut(s)	458
BanI	GGYRCC	2 cut(s)	578, 799
BbsI	GAAGAC	1 cut(s)	798
Bbv12I	GWGCWC	1 cut(s)	458
BbvI	GCAGC	2 cut(s)	101, 127
BccI	CCATC	2 cut(s)	392, 790
BcoDI	GTCTC	3 cut(s)	280, 415, 440
BfaI	CTAG	2 cut(s)	608, 654
BisI	GCNGC	4 cut(s)	115, 141, 374, 512
BlnI	CCTAGG	1 cut(s)	653
BlsI	GCNGC	4 cut(s)	116, 142, 375, 513
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	4 cut(s)	110, 208, 580, 801
BmsI	GCATC	2 cut(s)	192, 730
BpiI	GAAGAC	1 cut(s)	798
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
Bpu14I	TTCGAA	2 cut(s)	291, 553
BpuEI	CTTGAG	2 cut(s)	737, 796
BsaI	GGTCTC	2 cut(s)	280, 415
BsaJI	CCNNGG	3 cut(s)	270, 374, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 792
Bse118I	RCCGGY	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	797
BseDI	CCNNGG	3 cut(s)	270, 374, 653
BseGI	GGATG	2 cut(s)	183, 801
BseLI	CCNNNNNNNGG	2 cut(s)	361, 792
BseMI	GCAATG	1 cut(s)	797
BseMII	CTCAG	2 cut(s)	167, 405
BseRI	GAGGAG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	458
BseXI	GCAGC	2 cut(s)	101, 127
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	3 cut(s)	269, 301, 321
BshNI	GGYRCC	2 cut(s)	578, 799
BsiHKAI	GWGCWC	1 cut(s)	458
BsiSI	CCGG	3 cut(s)	210, 298, 362
BslFI	GGGAC	1 cut(s)	794
BslI	CCNNNNNNNGG	2 cut(s)	361, 792
BsmAI	GTCTC	3 cut(s)	280, 415, 440
BsmFI	GGGAC	1 cut(s)	794
BsnI	GGCC	3 cut(s)	269, 301, 321
Bso31I	GGTCTC	2 cut(s)	280, 415
Bsp119I	TTCGAA	2 cut(s)	291, 553
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp143I	GATC	2 cut(s)	19, 385
BspACI	CCGC	4 cut(s)	112, 374, 376, 511
BspANI	GGCC	3 cut(s)	269, 301, 321
BspCNI	CTCAG	2 cut(s)	168, 404
BspFNI	CGCG	1 cut(s)	376
BspLI	GGNNCC	4 cut(s)	110, 208, 580, 801
BspT104I	TTCGAA	2 cut(s)	291, 553
BspT107I	GGYRCC	2 cut(s)	578, 799
BspTNI	GGTCTC	2 cut(s)	280, 415
BsrDI	GCAATG	1 cut(s)	797
BsrFI	RCCGGY	1 cut(s)	297
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	3 cut(s)	270, 374, 653
BssMI	GATC	2 cut(s)	19, 385
BssT1I	CCWWGG	1 cut(s)	653
Bst4CI	ACNGT	4 cut(s)	125, 156, 503, 804
Bst6I	CTCTTC	1 cut(s)	258
BstBI	TTCGAA	2 cut(s)	291, 553
BstDEI	CTNAG	3 cut(s)	176, 279, 391
BstDSI	CCRYGG	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	183, 801
BstFNI	CGCG	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	2 cut(s)	22, 388
BstMAI	GTCTC	3 cut(s)	280, 415, 440
BstMBI	GATC	2 cut(s)	19, 385
BstSLI	GKGCMC	1 cut(s)	458
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	101, 127
BstV2I	GAAGAC	1 cut(s)	798
BsuRI	GGCC	3 cut(s)	269, 301, 321
BtgI	CCRYGG	1 cut(s)	374
BtsCI	GGATG	2 cut(s)	183, 801
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	2 cut(s)	456, 765
CaiI	CAGNNNCTG	1 cut(s)	770
CfoI	GCGC	1 cut(s)	516
Cfr10I	RCCGGY	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	109
Cfr42I	CCGCGG	1 cut(s)	377
CseI	GACGC	2 cut(s)	154, 480
Csp6I	GTAC	3 cut(s)	562, 579, 650
CviAII	CATG	2 cut(s)	467, 583
CviJI	RGCY	6 cut(s)	140, 191, 269, 301, 321, 662
CviKI_1	RGCY	6 cut(s)	140, 191, 269, 301, 321, 662
CviQI	GTAC	3 cut(s)	562, 579, 650
DdeI	CTNAG	3 cut(s)	176, 279, 391
DpnI	GATC	2 cut(s)	21, 387
DpnII	GATC	2 cut(s)	19, 385
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	653
Eco147I	AGGCCT	1 cut(s)	321
Eco31I	GGTCTC	2 cut(s)	280, 415
Eco47I	GGWCC	1 cut(s)	109
Eco57I	CTGAAG	2 cut(s)	710, 831
EcoT14I	CCWWGG	1 cut(s)	653
ErhI	CCWWGG	1 cut(s)	653
FaeI	CATG	2 cut(s)	470, 586
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FaqI	GGGAC	1 cut(s)	794
FatI	CATG	2 cut(s)	466, 582
FauI	CCCGC	1 cut(s)	369
FblI	GTMKAC	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	115, 141, 374, 512
FokI	GGATG	2 cut(s)	170, 808
Fsp4HI	GCNGC	4 cut(s)	115, 141, 374, 512
FspBI	CTAG	2 cut(s)	608, 654
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	4 cut(s)	115, 141, 374, 512
HaeIII	GGCC	3 cut(s)	269, 301, 321
HapII	CCGG	3 cut(s)	210, 298, 362
HgaI	GACGC	2 cut(s)	154, 480
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	2 cut(s)	470, 586
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HinfI	GANTC	4 cut(s)	28, 550, 767, 782
HpaII	CCGG	3 cut(s)	210, 298, 362
HphI	GGTGA	2 cut(s)	23, 391
Hpy166II	GTNNAC	2 cut(s)	92, 456
Hpy188I	TCNGA	3 cut(s)	121, 188, 811
Hpy188III	TCNNGA	5 cut(s)	238, 484, 674, 716, 775
Hpy8I	GTNNAC	2 cut(s)	92, 456
Hpy99I	CGWCG	1 cut(s)	148
HpyCH4III	ACNGT	4 cut(s)	125, 156, 503, 804
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	4 cut(s)	250, 456, 531, 790
HpyF3I	CTNAG	3 cut(s)	176, 279, 391
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	2 cut(s)	470, 586
HspAI	GCGC	1 cut(s)	514
KpnI	GGTACC	1 cut(s)	582
KspI	CCGCGG	1 cut(s)	377
Kzo9I	GATC	2 cut(s)	19, 385
LmnI	GCTCC	2 cut(s)	122, 137
Lsp1109I	GCAGC	2 cut(s)	101, 127
LweI	GCATC	2 cut(s)	192, 730
MaeI	CTAG	2 cut(s)	608, 654
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	3 cut(s)	5, 410, 760
MalI	GATC	2 cut(s)	21, 387
MboI	GATC	2 cut(s)	19, 385
MboII	GAAGA	6 cut(s)	60, 275, 305, 598, 716, 798
MhlI	GDGCHC	1 cut(s)	458
MluCI	AATT	1 cut(s)	541
MlyI	GAGTC	2 cut(s)	22, 776
MmeI	TCCRAC	3 cut(s)	5, 144, 609
MspA1I	CMGCKG	2 cut(s)	114, 376
MspI	CCGG	3 cut(s)	210, 298, 362
MvnI	CGCG	1 cut(s)	376
NdeII	GATC	2 cut(s)	19, 385
NlaIII	CATG	2 cut(s)	470, 586
NlaIV	GGNNCC	4 cut(s)	110, 208, 580, 801
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	2 cut(s)	5, 760
NspV	TTCGAA	2 cut(s)	291, 553
PceI	AGGCCT	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	550, 767
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	4 cut(s)	116, 142, 375, 513
PleI	GAGTC	2 cut(s)	22, 776
PpsI	GAGTC	2 cut(s)	22, 776
PspN4I	GGNNCC	4 cut(s)	110, 208, 580, 801
PspPI	GGNCC	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	770
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	3 cut(s)	563, 580, 651
RsaNI	GTAC	3 cut(s)	562, 579, 650
SacII	CCGCGG	1 cut(s)	377
SatI	GCNGC	4 cut(s)	115, 141, 374, 512
Sau3AI	GATC	2 cut(s)	19, 385
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	2 cut(s)	22, 776
SduI	GDGCHC	1 cut(s)	458
SfaNI	GCATC	2 cut(s)	192, 730
Sfr303I	CCGCGG	1 cut(s)	377
SfuI	TTCGAA	2 cut(s)	291, 553
SgrBI	CCGCGG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	716, 775
SmoI	CTYRAG	2 cut(s)	716, 775
Sse9I	AATT	1 cut(s)	541
SseBI	AGGCCT	1 cut(s)	321
SsiI	CCGC	4 cut(s)	112, 374, 376, 511
SspMI	CTAG	2 cut(s)	608, 654
StuI	AGGCCT	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	4 cut(s)	125, 156, 503, 804
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	4 cut(s)	291, 307, 553, 822
TasI	AATT	1 cut(s)	541
TauI	GCSGC	2 cut(s)	376, 514
TfiI	GAWTC	2 cut(s)	550, 767
TscAI	CASTG	2 cut(s)	463, 765
TseFI	GTSAC	2 cut(s)	5, 760
TseI	GCWGC	2 cut(s)	114, 140
Tsp45I	GTSAC	2 cut(s)	5, 760
TspDTI	ATGAA	4 cut(s)	32, 185, 481, 599
TspRI	CASTG	2 cut(s)	463, 765
Tth111I	GACNNNGTC	1 cut(s)	154
VneI	GTGCAC	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	109
XmaJI	CCTAGG	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	91
XspI	CTAG	2 cut(s)	608, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.