Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007083

Physical Location & Seq

Genomic Coordinates Forward (+)

11724767 .. 11726669

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG129600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAAACCCCATCTTCAACACGAAGAGTCACAAGGTCGCAGACTTTGGTCCCCCAGAGCAACAACACCATACCAATTTCAAGGAAGAGTAATGAAGATTCTGAAATGGGTGTATCGAAATCAAGAACAAGAAATGGAAAACAGCAACAACAGCAAGACCGGTCTGCTCTGATCGACATAACCAACGATTCTCCGATAGTGGGAGTTGCGATGCAGACGCCGTCATCGGCGATTATGAAGCTGAGGAGCATCCGAGCCAAGACCACACCGGGTTCCGGCGAGGCTTTGTTGAGAGGTCAAGTCAAGACCCTGTTGCAACAAGTGGAGGAAGAGGCCGAGCTCTCTAAGCTCTCTTTCGAAAACCGGCCTTTTCGACATCTTCAAGGACTTATTGGGAACTCGCCGACCGGACTTCTTGCCCCAACTCCGGCGAACACGCCGCAGGTGAATGATCTCTCGGTTGATGGAAGTGGGAGTAACGTTGAGAGACCCTCTCCTCTAGTCCAAGAACAATTGATCTCTCAGGTGGTATGTGACATCTTTGAAGGAAAGAATCAAGCGAGCCTTGAATCACAAAAGAGTATCCTGAGTCGATCTCTGCTGCTTGATTTCTCTGAGAAGTCTGAAATCTCTTTCTCAGAAGAAGAAGATGATTACTCTTCTGTGATTACTAGTGAAAGCAAAGAAAGGTCATCCCCAGATGATGATAGTGCTTCAGTGTGGTCCATTCAGGTCAATGCGAGCACCTGTGATGAAGAAGAGGATGAAGGAGAAGACTACTATCTGAAGGGAGTTGATGAAATCGAAGAAGAGGAAGAGAATGAAGAGGATGCAGGATATGATGTTGATGAGCTCTGTGAAGGTATAAGCAAGATTTTTGTGGGTGAGAAAAGAATGATTCCCAAGTTTGAAGGAAAGCACACAAAATTTGTGTACAACAGTGATGATGAAATTGCTGAAGAAGTTGTAGAAGACTCTACTCCACGTACTCCAGATTCAGCTGATGTTCTGTCACCTAGTGCCTTGTGCTTGAAGGGATTGCCTACACCAAGAGGAAAGCACCTGCGATTTCTGGACGAAAACGACTCTGCTTATAGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

367

Amino Acids

40.48

Weight (kDa)

4.47

Isoelectric Point (pI)

62.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51230 AT5G66230 AT5G66230
malus_domestica	MD02G1132500.v1.1 MD15G1246000.v1.1
prunus_persica	Prupe.7G168100_v2.0.a1
pyrus_communis	pycom02g10400 pycom15g21610
rosa_chinensis	RchiOBHm_Chr2g0099451 RchiOBHm_Chr6g0272671
rosa_laevigata	RLG00000004887 RLG00000016883
rosa_multiflora	Rmu_sc0002542.1_g000003 Rmu_sc0004888.1_g000020
rosa_roxburghii	Rroxscaffold_2G00143070
rosa_rugosa	Rorug02G0079600
rosa_samantha	Rh2AG129600 Rh2BG132700 Rh2CG133400 Rh2DG133700 Rh6AG170300 Rh6CG169700 Rh6DG179800
rosa_wichuraiana	Rw2G009980 Rw5G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	433, 1071
Acc36I	ACCTGC	2 cut(s)	433, 1071
AciI	CCGC	1 cut(s)	440
AclI	AACGTT	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	926
AcuI	CTGAAG	3 cut(s)	699, 806, 978
AcyI	GRCGYC	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	1019
AfaI	GTAC	2 cut(s)	935, 988
AfiI	CCNNNNNNNGG	3 cut(s)	200, 275, 427
AgeI	ACCGGT	1 cut(s)	159
AgsI	TTSAA	7 cut(s)	18, 81, 383, 545, 569, 911, 1033
AhlI	ACTAGT	1 cut(s)	671
AluBI	AGCT	5 cut(s)	241, 340, 349, 853, 1001
AluI	AGCT	5 cut(s)	241, 340, 349, 853, 1001
Alw21I	GWGCWC	3 cut(s)	342, 746, 855
Alw26I	GTCTC	1 cut(s)	481
AoxI	GGCC	2 cut(s)	333, 365
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	1 cut(s)	926
AsiGI	ACCGGT	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	49, 723
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	3 cut(s)	457, 896, 1005
AsuII	TTCGAA	1 cut(s)	357
AvaII	GGWCC	2 cut(s)	49, 723
BanII	GRGCYC	2 cut(s)	342, 855
BbsI	GAAGAC	2 cut(s)	780, 978
Bbv12I	GWGCWC	3 cut(s)	342, 746, 855
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	2 cut(s)	19, 458
BceAI	ACGGC	1 cut(s)	205
BciVI	GTATCC	1 cut(s)	593
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	481
BcuI	ACTAGT	1 cut(s)	671
BfaI	CTAG	3 cut(s)	500, 672, 1017
BfuAI	ACCTGC	2 cut(s)	433, 1071
BfuI	GTATCC	1 cut(s)	593
BisI	GCNGC	2 cut(s)	440, 602
BlsI	GCNGC	2 cut(s)	441, 603
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	2 cut(s)	49, 723
BmgT120I	GGNCC	2 cut(s)	49, 723
BmiI	GGNNCC	2 cut(s)	51, 274
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	3 cut(s)	201, 258, 820
BoxI	GACNNNNGTC	1 cut(s)	47
BpiI	GAAGAC	2 cut(s)	780, 978
BplI	GAGNNNNNCTC	6 cut(s)	476, 508, 478, 510, 580, 612
BpmI	CTGGAG	1 cut(s)	975
Bpu10I	CCTNAGC	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	270
BsaAI	YACGTR	1 cut(s)	986
BsaHI	GRCGYC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	481
BsaWI	WCCGGW	2 cut(s)	159, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 275, 427
Bse118I	RCCGGY	2 cut(s)	159, 363
BseGI	GGATG	4 cut(s)	249, 692, 769, 835
BseLI	CCNNNNNNNGG	3 cut(s)	200, 275, 427
BseMII	CTCAG	5 cut(s)	233, 536, 578, 606, 651
BseRI	GAGGAG	2 cut(s)	259, 486
BseXI	GCAGC	1 cut(s)	588
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	2 cut(s)	335, 367
BshTI	ACCGGT	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	408
BsiHKAI	GWGCWC	3 cut(s)	342, 746, 855
BsiSI	CCGG	6 cut(s)	160, 269, 276, 364, 408, 428
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	200, 275, 427
BsmAI	GTCTC	1 cut(s)	481
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	335, 367
Bso31I	GGTCTC	1 cut(s)	481
Bsp119I	TTCGAA	1 cut(s)	357
Bsp1286I	GDGCHC	3 cut(s)	342, 746, 855
Bsp1407I	TGTACA	1 cut(s)	933
Bsp143I	GATC	4 cut(s)	171, 451, 516, 593
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	2 cut(s)	335, 367
BspCNI	CTCAG	5 cut(s)	234, 535, 579, 607, 650
BspLI	GGNNCC	2 cut(s)	51, 274
BspMI	ACCTGC	2 cut(s)	433, 1071
BspT104I	TTCGAA	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	481
BsrFI	RCCGGY	2 cut(s)	159, 363
BsrGI	TGTACA	1 cut(s)	933
BssAI	RCCGGY	2 cut(s)	159, 363
BssMI	GATC	4 cut(s)	171, 451, 516, 593
BssNI	GRCGYC	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	941
Bst6I	CTCTTC	8 cut(s)	19, 80, 324, 664, 753, 804, 810, 819
BstACI	GRCGYC	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	933
BstBAI	YACGTR	1 cut(s)	986
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	562, 742
BstDEI	CTNAG	6 cut(s)	242, 345, 522, 587, 615, 637
BstF5I	GGATG	4 cut(s)	249, 692, 769, 835
BstKTI	GATC	4 cut(s)	174, 454, 519, 596
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	4 cut(s)	171, 451, 516, 593
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 346
BstPAI	GACNNNNGTC	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	2 cut(s)	780, 978
BsuI	GTATCC	1 cut(s)	593
BsuRI	GGCC	2 cut(s)	335, 367
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	4 cut(s)	249, 692, 769, 835
BtsIMutI	CAGTG	2 cut(s)	723, 946
BveI	ACCTGC	2 cut(s)	433, 1071
Cac8I	GCNNGC	2 cut(s)	562, 742
Cfr10I	RCCGGY	2 cut(s)	159, 363
Cfr13I	GGNCC	2 cut(s)	49, 723
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	934, 987
CspAI	ACCGGT	1 cut(s)	159
CviQI	GTAC	2 cut(s)	934, 987
DdeI	CTNAG	6 cut(s)	242, 345, 522, 587, 615, 637
DpnI	GATC	4 cut(s)	173, 453, 518, 595
DpnII	GATC	4 cut(s)	171, 451, 516, 593
DraIII	CACNNNGTG	1 cut(s)	1019
Eam1104I	CTCTTC	8 cut(s)	19, 80, 324, 664, 753, 804, 810, 819
EarI	CTCTTC	8 cut(s)	19, 80, 324, 664, 753, 804, 810, 819
Ecl136II	GAGCTC	2 cut(s)	340, 853
Eco24I	GRGCYC	2 cut(s)	342, 855
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	49, 723
Eco53kI	GAGCTC	2 cut(s)	340, 853
Eco57I	CTGAAG	3 cut(s)	699, 806, 978
EcoICRI	GAGCTC	2 cut(s)	340, 853
EcoT38I	GRGCYC	2 cut(s)	342, 855
FaiI	YATR	7 cut(s)	71, 179, 236, 532, 840, 866, 1095
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FaqI	GGGAC	1 cut(s)	35
Fnu4HI	GCNGC	2 cut(s)	440, 602
FokI	GGATG	4 cut(s)	236, 679, 776, 842
FriOI	GRGCYC	2 cut(s)	342, 855
Fsp4HI	GCNGC	2 cut(s)	440, 602
FspBI	CTAG	3 cut(s)	500, 672, 1017
GluI	GCNGC	2 cut(s)	440, 602
GsuI	CTGGAG	1 cut(s)	975
HaeIII	GGCC	2 cut(s)	335, 367
HapII	CCGG	6 cut(s)	160, 269, 276, 364, 408, 428
HgaI	GACGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	218
HpaII	CCGG	6 cut(s)	160, 269, 276, 364, 408, 428
HphI	GGTGA	3 cut(s)	457, 896, 1005
Hpy166II	GTNNAC	1 cut(s)	934
Hpy188I	TCNGA	8 cut(s)	103, 171, 195, 254, 616, 625, 640, 786
Hpy188III	TCNNGA	5 cut(s)	123, 304, 586, 992, 1073
Hpy8I	GTNNAC	1 cut(s)	934
HpyAV	CCTTC	6 cut(s)	539, 761, 781, 854, 905, 1027
HpyCH4III	ACNGT	1 cut(s)	941
HpyCH4IV	ACGT	2 cut(s)	480, 985
HpyCH4V	TGCA	3 cut(s)	214, 316, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 346
HpyF3I	CTNAG	6 cut(s)	242, 345, 522, 587, 615, 637
HpySE526I	ACGT	2 cut(s)	480, 985
Hsp92I	GRCGYC	1 cut(s)	218
Kzo9I	GATC	4 cut(s)	171, 451, 516, 593
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	1 cut(s)	588
LweI	GCATC	3 cut(s)	201, 258, 820
MaeI	CTAG	3 cut(s)	500, 672, 1017
MaeII	ACGT	2 cut(s)	480, 985
MaeIII	GTNAC	4 cut(s)	28, 476, 533, 1011
MalI	GATC	4 cut(s)	173, 453, 518, 595
MboI	GATC	4 cut(s)	171, 451, 516, 593
MfeI	CAATTG	1 cut(s)	512
MhlI	GDGCHC	3 cut(s)	342, 746, 855
MluCI	AATT	4 cut(s)	75, 512, 926, 951
MlyI	GAGTC	4 cut(s)	36, 598, 968, 1079
MspA1I	CMGCKG	1 cut(s)	1001
MspI	CCGG	6 cut(s)	160, 269, 276, 364, 408, 428
MspR9I	CCNGG	1 cut(s)	270
MunI	CAATTG	1 cut(s)	512
MwoI	GCNNNNNNNGC	2 cut(s)	151, 346
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	4 cut(s)	171, 451, 516, 593
NlaIV	GGNNCC	2 cut(s)	51, 274
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	3 cut(s)	28, 533, 1011
NspV	TTCGAA	1 cut(s)	357
PaqCI	CACCTGC	2 cut(s)	433, 1071
PfeI	GAWTC	6 cut(s)	98, 188, 553, 569, 898, 995
PflFI	GACNNNGTC	1 cut(s)	220
PinAI	ACCGGT	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	441, 603
PleI	GAGTC	4 cut(s)	35, 597, 968, 1079
PpsI	GAGTC	4 cut(s)	35, 597, 968, 1079
Ppu21I	YACGTR	1 cut(s)	986
PshAI	GACNNNNGTC	1 cut(s)	47
Psp124BI	GAGCTC	2 cut(s)	342, 855
Psp1406I	AACGTT	1 cut(s)	480
PspN4I	GGNNCC	2 cut(s)	51, 274
PspPI	GGNCC	2 cut(s)	49, 723
PsyI	GACNNNGTC	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	1001
RsaI	GTAC	2 cut(s)	935, 988
RsaNI	GTAC	2 cut(s)	934, 987
SacI	GAGCTC	2 cut(s)	342, 855
SatI	GCNGC	2 cut(s)	440, 602
Sau3AI	GATC	4 cut(s)	171, 451, 516, 593
Sau96I	GGNCC	2 cut(s)	49, 723
SchI	GAGTC	4 cut(s)	36, 598, 968, 1079
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	3 cut(s)	342, 746, 855
SfaNI	GCATC	3 cut(s)	201, 258, 820
SfuI	TTCGAA	1 cut(s)	357
SinI	GGWCC	2 cut(s)	49, 723
SpeI	ACTAGT	1 cut(s)	671
Sse9I	AATT	4 cut(s)	75, 512, 926, 951
SsiI	CCGC	1 cut(s)	440
SspMI	CTAG	3 cut(s)	500, 672, 1017
SstI	GAGCTC	2 cut(s)	342, 855
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	941
TaiI	ACGT	2 cut(s)	483, 988
TaqI	TCGA	6 cut(s)	116, 174, 357, 373, 592, 804
TasI	AATT	4 cut(s)	75, 512, 926, 951
TatI	WGTACW	1 cut(s)	933
TauI	GCSGC	1 cut(s)	442
TfiI	GAWTC	6 cut(s)	98, 188, 553, 569, 898, 995
TscAI	CASTG	2 cut(s)	723, 946
TseFI	GTSAC	3 cut(s)	28, 533, 1011
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	3 cut(s)	28, 533, 1011
TspDTI	ATGAA	7 cut(s)	108, 251, 768, 780, 813, 837, 963
TspRI	CASTG	2 cut(s)	723, 946
Tth111I	GACNNNGTC	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	49, 723
XapI	RAATTY	1 cut(s)	926
XspI	CTAG	3 cut(s)	500, 672, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.