Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007083

Physical Location & Seq

Genomic Coordinates Forward (+)

10937872 .. 10939670

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCGCAGAATTTGGTTGCCCAGAGCAACAACACAATACCAATTTCAAGGAAGAATAATGAGGATTCTGAAATGGGTGTATCGAAATCAAGAACAAGAAATGGAAAACAGCAACAACAACAGCAAGACCGGTCTGCTCTGATCGACATAACCAACGATTCTCCGATAGTGGGAGTTGCGATGCAGACGCCGTCATCGGCGATTATGAAACTGAGGAGCATCCGAGCCAAGACCACACCGGGTTCCGGCGAGGCTTTGTTGAGAGGTCAAGTCAAGACCCTGTTGCAACAAGTGGAGGAAGAGGCCGAGCTCTCTAAGCTCTCTTTCGAAAACCGGCCTTTTCGACATCTTCAAGGACTTATTGGAAACTCGCCGACCGGACTTCTTGCCCCAACTCCGGCGAACACGCCGCAGGTGAATGATCTCTCGGTTGATGGAAGTGGGAGTGACTTTGAGAGACCCTCTCCTCTAGTCCAAGAACAATTGATCTCTCAGGTGGTATGTGACATCTTTGAAGGAAAGAATCAAGCGAGCCTTGAATCACAAAAGAGTATCCTGAGTCGATCTCTGCTGCTTGATTTCTCTGAGAAGTCTGAAATCTCTTTCTCAGAAGAAGAAGATTGCTCTTCTGTGATTACTAGTGAAAGCAAAGAAAGGTCATCCCCAGATGATGATAGTGCTTCAGTGTGGTCCATTCAGGTCAATGCGAGCACCTGTGATGAAGAAGAGGATGAAGGAGAAGACTACTATCTGAAGGGAGTTGATGAAATCGAAGAAGAGGAAGAGAATGAAGAGGATGCAGGGTATGATGTTGATGAGCTCTGTGAAGGTATAAGCAAGATTTTTGTGGGTGAGAAGAGAATGATTCCCAAGTTTGAAGGAAAGCACACAAAATTTGTGTACAACAGTGATGATGAAATTGCTGAAGAAGTTGTGGAAGACTCTACTCCACGTACTCCAGATTCAGCTGATGTTCTGTCACCTAGTGCCTTGTGCTTGAAGGGATTGCCTACACCAAGAGGAAAGCACCTGCGATTTCTGGACGAAAACGACTCTGCTTATAGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

357

Amino Acids

39.22

Weight (kDa)

4.4

Isoelectric Point (pI)

60.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51230 AT5G66230 AT5G66230
malus_domestica	MD02G1132500.v1.1 MD15G1246000.v1.1
prunus_persica	Prupe.7G168100_v2.0.a1
pyrus_communis	pycom02g10400 pycom15g21610
rosa_chinensis	RchiOBHm_Chr2g0099451 RchiOBHm_Chr6g0272671
rosa_laevigata	RLG00000004887 RLG00000016883
rosa_multiflora	Rmu_sc0002542.1_g000003 Rmu_sc0004888.1_g000020
rosa_roxburghii	Rroxscaffold_2G00143070
rosa_rugosa	Rorug02G0079600
rosa_samantha	Rh2AG129600 Rh2BG132700 Rh2CG133400 Rh2DG133700 Rh6AG170300 Rh6CG169700 Rh6DG179800
rosa_wichuraiana	Rw2G009980 Rw5G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	403, 1038
Acc36I	ACCTGC	2 cut(s)	403, 1038
AciI	CCGC	1 cut(s)	410
AcsI	RAATTY	2 cut(s)	10, 893
AcuI	CTGAAG	3 cut(s)	666, 773, 945
AcyI	GRCGYC	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	986
AfaI	GTAC	2 cut(s)	902, 955
AfiI	CCNNNNNNNGG	3 cut(s)	170, 245, 397
AgeI	ACCGGT	1 cut(s)	129
AgsI	TTSAA	6 cut(s)	48, 353, 515, 539, 878, 1000
AhlI	ACTAGT	1 cut(s)	638
AluBI	AGCT	4 cut(s)	310, 319, 820, 968
AluI	AGCT	4 cut(s)	310, 319, 820, 968
Alw21I	GWGCWC	3 cut(s)	312, 713, 822
Alw26I	GTCTC	1 cut(s)	451
AoxI	GGCC	2 cut(s)	303, 335
ApeKI	GCWGC	1 cut(s)	571
ApoI	RAATTY	2 cut(s)	10, 893
AsiGI	ACCGGT	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	690
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	3 cut(s)	427, 863, 972
AsuII	TTCGAA	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	690
BanII	GRGCYC	2 cut(s)	312, 822
BbsI	GAAGAC	2 cut(s)	747, 945
Bbv12I	GWGCWC	3 cut(s)	312, 713, 822
BbvI	GCAGC	1 cut(s)	558
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	1 cut(s)	175
BciVI	GTATCC	1 cut(s)	563
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	451
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	3 cut(s)	470, 639, 984
BfuAI	ACCTGC	2 cut(s)	403, 1038
BfuI	GTATCC	1 cut(s)	563
BisI	GCNGC	2 cut(s)	410, 572
BlsI	GCNGC	2 cut(s)	411, 573
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	690
BmgT120I	GGNCC	1 cut(s)	690
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	3 cut(s)	171, 228, 787
BpiI	GAAGAC	2 cut(s)	747, 945
BplI	GAGNNNNNCTC	6 cut(s)	446, 478, 448, 480, 550, 582
BpmI	CTGGAG	1 cut(s)	942
Bpu14I	TTCGAA	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	953
BsaHI	GRCGYC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	451
BsaWI	WCCGGW	2 cut(s)	129, 377
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 245, 397
Bse118I	RCCGGY	2 cut(s)	129, 333
BseGI	GGATG	4 cut(s)	219, 659, 736, 802
BseLI	CCNNNNNNNGG	3 cut(s)	170, 245, 397
BseMII	CTCAG	5 cut(s)	203, 506, 548, 576, 621
BseRI	GAGGAG	2 cut(s)	229, 456
BseXI	GCAGC	1 cut(s)	558
Bsh1285I	CGRYCG	1 cut(s)	378
BshFI	GGCC	2 cut(s)	305, 337
BshTI	ACCGGT	1 cut(s)	129
BsiEI	CGRYCG	1 cut(s)	378
BsiHKAI	GWGCWC	3 cut(s)	312, 713, 822
BsiSI	CCGG	6 cut(s)	130, 239, 246, 334, 378, 398
BslI	CCNNNNNNNGG	3 cut(s)	170, 245, 397
BsmAI	GTCTC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	305, 337
Bso31I	GGTCTC	1 cut(s)	451
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	3 cut(s)	312, 713, 822
Bsp1407I	TGTACA	1 cut(s)	900
Bsp143I	GATC	4 cut(s)	141, 421, 486, 563
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	2 cut(s)	305, 337
BspCNI	CTCAG	5 cut(s)	204, 505, 549, 577, 620
BspLI	GGNNCC	1 cut(s)	244
BspMI	ACCTGC	2 cut(s)	403, 1038
BspQI	GCTCTTC	1 cut(s)	631
BspT104I	TTCGAA	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	451
BsrFI	RCCGGY	2 cut(s)	129, 333
BsrGI	TGTACA	1 cut(s)	900
BssAI	RCCGGY	2 cut(s)	129, 333
BssMI	GATC	4 cut(s)	141, 421, 486, 563
BssNI	GRCGYC	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	908
Bst6I	CTCTTC	7 cut(s)	294, 631, 720, 771, 777, 786, 851
BstACI	GRCGYC	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	900
BstBAI	YACGTR	1 cut(s)	953
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	532, 709
BstDEI	CTNAG	6 cut(s)	212, 315, 492, 557, 585, 607
BstF5I	GGATG	4 cut(s)	219, 659, 736, 802
BstKTI	GATC	4 cut(s)	144, 424, 489, 566
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	4 cut(s)	141, 421, 486, 563
BstMCI	CGRYCG	1 cut(s)	378
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	558
BstV2I	GAAGAC	2 cut(s)	747, 945
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	305, 337
BtgZI	GCGATG	1 cut(s)	194
BtsCI	GGATG	4 cut(s)	219, 659, 736, 802
BtsIMutI	CAGTG	2 cut(s)	690, 913
BveI	ACCTGC	2 cut(s)	403, 1038
Cac8I	GCNNGC	2 cut(s)	532, 709
Cfr10I	RCCGGY	2 cut(s)	129, 333
Cfr13I	GGNCC	1 cut(s)	690
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	901, 954
CspAI	ACCGGT	1 cut(s)	129
CviJI	RGCY	9 cut(s)	227, 254, 305, 310, 319, 337, 534, 820, 968
CviKI_1	RGCY	9 cut(s)	227, 254, 305, 310, 319, 337, 534, 820, 968
CviQI	GTAC	2 cut(s)	901, 954
DdeI	CTNAG	6 cut(s)	212, 315, 492, 557, 585, 607
DpnI	GATC	4 cut(s)	143, 423, 488, 565
DpnII	GATC	4 cut(s)	141, 421, 486, 563
DraIII	CACNNNGTG	1 cut(s)	986
Eam1104I	CTCTTC	7 cut(s)	294, 631, 720, 771, 777, 786, 851
EarI	CTCTTC	7 cut(s)	294, 631, 720, 771, 777, 786, 851
Ecl136II	GAGCTC	2 cut(s)	310, 820
Eco24I	GRGCYC	2 cut(s)	312, 822
Eco31I	GGTCTC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	690
Eco53kI	GAGCTC	2 cut(s)	310, 820
Eco57I	CTGAAG	3 cut(s)	666, 773, 945
EcoICRI	GAGCTC	2 cut(s)	310, 820
EcoT38I	GRGCYC	2 cut(s)	312, 822
FaiI	YATR	6 cut(s)	149, 206, 502, 807, 833, 1062
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
Fnu4HI	GCNGC	2 cut(s)	410, 572
FokI	GGATG	4 cut(s)	206, 646, 743, 809
FriOI	GRGCYC	2 cut(s)	312, 822
Fsp4HI	GCNGC	2 cut(s)	410, 572
FspBI	CTAG	3 cut(s)	470, 639, 984
GluI	GCNGC	2 cut(s)	410, 572
GsuI	CTGGAG	1 cut(s)	942
HaeIII	GGCC	2 cut(s)	305, 337
HapII	CCGG	6 cut(s)	130, 239, 246, 334, 378, 398
HgaI	GACGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	188
HinfI	GANTC	9 cut(s)	65, 158, 523, 539, 559, 865, 941, 962, 1052
HpaII	CCGG	6 cut(s)	130, 239, 246, 334, 378, 398
HphI	GGTGA	3 cut(s)	427, 863, 972
Hpy166II	GTNNAC	1 cut(s)	901
Hpy188I	TCNGA	8 cut(s)	70, 141, 165, 224, 586, 595, 610, 753
Hpy188III	TCNNGA	5 cut(s)	90, 274, 556, 959, 1040
Hpy8I	GTNNAC	1 cut(s)	901
HpyAV	CCTTC	6 cut(s)	509, 728, 748, 821, 872, 994
HpyCH4III	ACNGT	1 cut(s)	908
HpyCH4IV	ACGT	1 cut(s)	952
HpyCH4V	TGCA	3 cut(s)	184, 286, 800
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	6 cut(s)	212, 315, 492, 557, 585, 607
HpySE526I	ACGT	1 cut(s)	952
Hsp92I	GRCGYC	1 cut(s)	188
Kzo9I	GATC	4 cut(s)	141, 421, 486, 563
LguI	GCTCTTC	1 cut(s)	631
LmnI	GCTCC	1 cut(s)	216
Lsp1109I	GCAGC	1 cut(s)	558
LweI	GCATC	3 cut(s)	171, 228, 787
MaeI	CTAG	3 cut(s)	470, 639, 984
MaeII	ACGT	1 cut(s)	952
MaeIII	GTNAC	3 cut(s)	446, 503, 978
MalI	GATC	4 cut(s)	143, 423, 488, 565
MboI	GATC	4 cut(s)	141, 421, 486, 563
MfeI	CAATTG	1 cut(s)	482
MhlI	GDGCHC	3 cut(s)	312, 713, 822
MluCI	AATT	5 cut(s)	10, 42, 482, 893, 918
MlyI	GAGTC	3 cut(s)	568, 935, 1046
MspA1I	CMGCKG	1 cut(s)	968
MspI	CCGG	6 cut(s)	130, 239, 246, 334, 378, 398
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	482
MwoI	GCNNNNNNNGC	1 cut(s)	316
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	4 cut(s)	141, 421, 486, 563
NlaIV	GGNNCC	1 cut(s)	244
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	3 cut(s)	446, 503, 978
NspV	TTCGAA	1 cut(s)	327
PaqCI	CACCTGC	2 cut(s)	403, 1038
PciSI	GCTCTTC	1 cut(s)	631
PfeI	GAWTC	6 cut(s)	65, 158, 523, 539, 865, 962
PflFI	GACNNNGTC	1 cut(s)	190
PinAI	ACCGGT	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	411, 573
PleI	GAGTC	3 cut(s)	567, 935, 1046
PpsI	GAGTC	3 cut(s)	567, 935, 1046
Ppu21I	YACGTR	1 cut(s)	953
Psp124BI	GAGCTC	2 cut(s)	312, 822
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	690
PsyI	GACNNNGTC	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	968
RsaI	GTAC	2 cut(s)	902, 955
RsaNI	GTAC	2 cut(s)	901, 954
SacI	GAGCTC	2 cut(s)	312, 822
SapI	GCTCTTC	1 cut(s)	631
SatI	GCNGC	2 cut(s)	410, 572
Sau3AI	GATC	4 cut(s)	141, 421, 486, 563
Sau96I	GGNCC	1 cut(s)	690
SchI	GAGTC	3 cut(s)	568, 935, 1046
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	3 cut(s)	312, 713, 822
SfaNI	GCATC	3 cut(s)	171, 228, 787
SfuI	TTCGAA	1 cut(s)	327
SinI	GGWCC	1 cut(s)	690
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	5 cut(s)	10, 42, 482, 893, 918
SsiI	CCGC	1 cut(s)	410
SspMI	CTAG	3 cut(s)	470, 639, 984
SstI	GAGCTC	2 cut(s)	312, 822
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	908
TaiI	ACGT	1 cut(s)	955
TaqI	TCGA	6 cut(s)	83, 144, 327, 343, 562, 771
TasI	AATT	5 cut(s)	10, 42, 482, 893, 918
TatI	WGTACW	1 cut(s)	900
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	6 cut(s)	65, 158, 523, 539, 865, 962
TscAI	CASTG	2 cut(s)	690, 913
TseFI	GTSAC	3 cut(s)	446, 503, 978
TseI	GCWGC	1 cut(s)	571
Tsp45I	GTSAC	3 cut(s)	446, 503, 978
TspDTI	ATGAA	6 cut(s)	221, 735, 747, 780, 804, 930
TspRI	CASTG	2 cut(s)	690, 913
Tth111I	GACNNNGTC	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	690
XapI	RAATTY	2 cut(s)	10, 893
XspI	CTAG	3 cut(s)	470, 639, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.