Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002542.1

Orthogroup ID

OG0007083

Physical Location & Seq

Genomic Coordinates Forward (+)

3823 .. 5731

Gene Structure 1909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002542.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atggaaaccccatcttcaacacgaagagtcacaaggtcgcagactttggtcccccagagcaacaaccccattccaatttcaaggaagaataatgaagattctgaaatgggtgtatcgaaatcaagaacaagaaatggaaaacagcaacaacagcaagaccggtctgctctgatcgacataaccaacgattctccgatagtgggagttgcaatgcagacgccgtcatcggcgattatgaagctgaggagcatccgagccaagaccacaccaggttccggcgaggctttgttgagaggtcaagtcaagaccctgttgcaacaagtggaggaagaggccgagctctctaagctctccttcgaaaaccggccttttcgacatcttcaaggacttattgggaactcgccgaccggacttcttgccccaactccggcgaacacgccgcaggtgaatgatctctcggttgatggaagtgggagtaacgttgagagaccctctcctctagtccaagaacaattaatctctcaggtggtgtgtgacatctttgaaggaaagaatcaagcgagccttgaatcacaaaagagtatcctgagtcgatctctgctgcttgatttctctgagaagtctgaattctctttctcagaagaagaagattgctcttctgtgattactagtgaaagcaaagaaaggtcatccccagatgatgatagtgcttcagtgtggtctattcaggtcaatgcgagcacctgtgatgaagaagaggatgaaggagaagactactatctgaagggagttgatgaaatcgtagaagaggaagagaatgaagaggatgcaggatatgatgttgatgagctctgtgaaggtataagcaagatttttgtgggtgagaagagaatgattcccaagtttgaaggaaagcacacaaaatttgtgtacaacagtgatgatgaaattgctgaagaagttgtggaagactctactccacgtactccagattcagctgatgttctgtcacctagtgccttgtgcttgaagggattgcctacaccaagaggaaagcacctgcgatttctggacgaaaacgactctgcttatagttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

366

Amino Acids

40.33

Weight (kDa)

4.5

Isoelectric Point (pI)

60.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51230 AT5G66230 AT5G66230
malus_domestica	MD02G1132500.v1.1 MD15G1246000.v1.1
prunus_persica	Prupe.7G168100_v2.0.a1
pyrus_communis	pycom02g10400 pycom15g21610
rosa_chinensis	RchiOBHm_Chr2g0099451 RchiOBHm_Chr6g0272671
rosa_laevigata	RLG00000004887 RLG00000016883
rosa_multiflora	Rmu_sc0002542.1_g000003 Rmu_sc0004888.1_g000020
rosa_roxburghii	Rroxscaffold_2G00143070
rosa_rugosa	Rorug02G0079600
rosa_samantha	Rh2AG129600 Rh2BG132700 Rh2CG133400 Rh2DG133700 Rh6AG170300 Rh6CG169700 Rh6DG179800
rosa_wichuraiana	Rw2G009980 Rw5G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	433, 1068
Acc36I	ACCTGC	2 cut(s)	433, 1068
AciI	CCGC	1 cut(s)	440
AclI	AACGTT	1 cut(s)	480
AcsI	RAATTY	2 cut(s)	626, 923
AcuI	CTGAAG	3 cut(s)	696, 803, 975
AcyI	GRCGYC	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	1016
AfaI	GTAC	2 cut(s)	932, 985
AfiI	CCNNNNNNNGG	3 cut(s)	200, 275, 427
AgeI	ACCGGT	1 cut(s)	159
AgsI	TTSAA	7 cut(s)	18, 81, 383, 545, 569, 908, 1030
AhlI	ACTAGT	1 cut(s)	668
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	5 cut(s)	241, 340, 349, 850, 998
AluI	AGCT	5 cut(s)	241, 340, 349, 850, 998
Alw21I	GWGCWC	3 cut(s)	342, 743, 852
Alw26I	GTCTC	1 cut(s)	481
AoxI	GGCC	2 cut(s)	333, 365
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	2 cut(s)	626, 923
AseI	ATTAAT	1 cut(s)	515
AsiGI	ACCGGT	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	3 cut(s)	457, 893, 1002
AsuII	TTCGAA	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	49
BanII	GRGCYC	2 cut(s)	342, 852
BbsI	GAAGAC	2 cut(s)	777, 975
Bbv12I	GWGCWC	3 cut(s)	342, 743, 852
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	2 cut(s)	19, 458
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	481
BcuI	ACTAGT	1 cut(s)	668
BfaI	CTAG	3 cut(s)	500, 669, 1014
BfuAI	ACCTGC	2 cut(s)	433, 1068
BfuI	GTATCC	1 cut(s)	593
BisI	GCNGC	2 cut(s)	440, 602
BlsI	GCNGC	2 cut(s)	441, 603
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	51, 274
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	258, 817
BoxI	GACNNNNGTC	1 cut(s)	47
BpiI	GAAGAC	2 cut(s)	777, 975
BplI	GAGNNNNNCTC	6 cut(s)	476, 508, 478, 510, 580, 612
BpmI	CTGGAG	1 cut(s)	972
Bpu10I	CCTNAGC	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	983
BsaHI	GRCGYC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	481
BsaWI	WCCGGW	2 cut(s)	159, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 275, 427
Bse118I	RCCGGY	2 cut(s)	159, 363
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	270
BseGI	GGATG	4 cut(s)	249, 689, 766, 832
BseLI	CCNNNNNNNGG	3 cut(s)	200, 275, 427
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	5 cut(s)	233, 536, 578, 606, 651
BseRI	GAGGAG	2 cut(s)	259, 486
BseXI	GCAGC	1 cut(s)	588
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	2 cut(s)	335, 367
BshTI	ACCGGT	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	408
BsiHKAI	GWGCWC	3 cut(s)	342, 743, 852
BsiSI	CCGG	5 cut(s)	160, 276, 364, 408, 428
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	200, 275, 427
BsmAI	GTCTC	1 cut(s)	481
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	335, 367
Bso31I	GGTCTC	1 cut(s)	481
Bsp119I	TTCGAA	1 cut(s)	357
Bsp1286I	GDGCHC	3 cut(s)	342, 743, 852
Bsp1407I	TGTACA	1 cut(s)	930
Bsp143I	GATC	3 cut(s)	171, 451, 593
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	2 cut(s)	335, 367
BspCNI	CTCAG	5 cut(s)	234, 535, 579, 607, 650
BspLI	GGNNCC	2 cut(s)	51, 274
BspMI	ACCTGC	2 cut(s)	433, 1068
BspQI	GCTCTTC	1 cut(s)	661
BspT104I	TTCGAA	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	2 cut(s)	159, 363
BsrGI	TGTACA	1 cut(s)	930
BssAI	RCCGGY	2 cut(s)	159, 363
BssMI	GATC	3 cut(s)	171, 451, 593
BssNI	GRCGYC	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	938
Bst6I	CTCTTC	8 cut(s)	19, 324, 661, 750, 801, 807, 816, 881
BstACI	GRCGYC	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	930
BstBAI	YACGTR	1 cut(s)	983
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	562, 739
BstDEI	CTNAG	6 cut(s)	242, 345, 522, 587, 615, 637
BstF5I	GGATG	4 cut(s)	249, 689, 766, 832
BstKTI	GATC	3 cut(s)	174, 454, 596
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	3 cut(s)	171, 451, 593
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 346
BstNI	CCWGG	1 cut(s)	270
BstPAI	GACNNNNGTC	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	2 cut(s)	777, 975
BsuI	GTATCC	1 cut(s)	593
BsuRI	GGCC	2 cut(s)	335, 367
BtsCI	GGATG	4 cut(s)	249, 689, 766, 832
BtsIMutI	CAGTG	2 cut(s)	720, 943
BveI	ACCTGC	2 cut(s)	433, 1068
Cac8I	GCNNGC	2 cut(s)	562, 739
Cfr10I	RCCGGY	2 cut(s)	159, 363
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	226
CsiI	ACCWGGT	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	931, 984
CspAI	ACCGGT	1 cut(s)	159
CviQI	GTAC	2 cut(s)	931, 984
DdeI	CTNAG	6 cut(s)	242, 345, 522, 587, 615, 637
DpnI	GATC	3 cut(s)	173, 453, 595
DpnII	GATC	3 cut(s)	171, 451, 593
DraIII	CACNNNGTG	1 cut(s)	1016
Eam1104I	CTCTTC	8 cut(s)	19, 324, 661, 750, 801, 807, 816, 881
EarI	CTCTTC	8 cut(s)	19, 324, 661, 750, 801, 807, 816, 881
Ecl136II	GAGCTC	2 cut(s)	340, 850
Eco24I	GRGCYC	2 cut(s)	342, 852
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	49
Eco53kI	GAGCTC	2 cut(s)	340, 850
Eco57I	CTGAAG	3 cut(s)	696, 803, 975
EcoICRI	GAGCTC	2 cut(s)	340, 850
EcoRI	GAATTC	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	268
EcoT38I	GRGCYC	2 cut(s)	342, 852
FaiI	YATR	5 cut(s)	179, 236, 837, 863, 1092
FalI	AAGNNNNNCTT	4 cut(s)	338, 370, 549, 581
FaqI	GGGAC	1 cut(s)	35
Fnu4HI	GCNGC	2 cut(s)	440, 602
FokI	GGATG	4 cut(s)	236, 676, 773, 839
FriOI	GRGCYC	2 cut(s)	342, 852
Fsp4HI	GCNGC	2 cut(s)	440, 602
FspBI	CTAG	3 cut(s)	500, 669, 1014
GluI	GCNGC	2 cut(s)	440, 602
GsuI	CTGGAG	1 cut(s)	972
HaeIII	GGCC	2 cut(s)	335, 367
HapII	CCGG	5 cut(s)	160, 276, 364, 408, 428
HgaI	GACGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	218
HpaII	CCGG	5 cut(s)	160, 276, 364, 408, 428
HphI	GGTGA	3 cut(s)	457, 893, 1002
Hpy166II	GTNNAC	1 cut(s)	931
Hpy188I	TCNGA	8 cut(s)	103, 171, 195, 254, 616, 625, 640, 783
Hpy188III	TCNNGA	5 cut(s)	123, 304, 586, 989, 1070
Hpy8I	GTNNAC	1 cut(s)	931
HpyAV	CCTTC	7 cut(s)	364, 539, 758, 778, 851, 902, 1024
HpyCH4III	ACNGT	1 cut(s)	938
HpyCH4IV	ACGT	2 cut(s)	480, 982
HpyCH4V	TGCA	4 cut(s)	209, 214, 316, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 346
HpyF3I	CTNAG	6 cut(s)	242, 345, 522, 587, 615, 637
HpySE526I	ACGT	2 cut(s)	480, 982
Hsp92I	GRCGYC	1 cut(s)	218
Kzo9I	GATC	3 cut(s)	171, 451, 593
LguI	GCTCTTC	1 cut(s)	661
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	1 cut(s)	588
LweI	GCATC	2 cut(s)	258, 817
MabI	ACCWGGT	1 cut(s)	268
MaeI	CTAG	3 cut(s)	500, 669, 1014
MaeII	ACGT	2 cut(s)	480, 982
MaeIII	GTNAC	4 cut(s)	28, 476, 533, 1008
MalI	GATC	3 cut(s)	173, 453, 595
MboI	GATC	3 cut(s)	171, 451, 593
MhlI	GDGCHC	3 cut(s)	342, 743, 852
MluCI	AATT	5 cut(s)	75, 512, 626, 923, 948
MlyI	GAGTC	4 cut(s)	36, 598, 965, 1076
MseI	TTAA	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	998
MspI	CCGG	5 cut(s)	160, 276, 364, 408, 428
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	151, 346
NdeII	GATC	3 cut(s)	171, 451, 593
NlaIV	GGNNCC	2 cut(s)	51, 274
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	3 cut(s)	28, 533, 1008
NspV	TTCGAA	1 cut(s)	357
PaqCI	CACCTGC	2 cut(s)	433, 1068
PciSI	GCTCTTC	1 cut(s)	661
PfeI	GAWTC	6 cut(s)	98, 188, 553, 569, 895, 992
PflFI	GACNNNGTC	1 cut(s)	220
PinAI	ACCGGT	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	441, 603
PleI	GAGTC	4 cut(s)	35, 597, 965, 1076
PpsI	GAGTC	4 cut(s)	35, 597, 965, 1076
Ppu21I	YACGTR	1 cut(s)	983
PshAI	GACNNNNGTC	1 cut(s)	47
PshBI	ATTAAT	1 cut(s)	515
Psp124BI	GAGCTC	2 cut(s)	342, 852
Psp1406I	AACGTT	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	51, 274
PspPI	GGNCC	1 cut(s)	49
PsyI	GACNNNGTC	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	998
RsaI	GTAC	2 cut(s)	932, 985
RsaNI	GTAC	2 cut(s)	931, 984
SacI	GAGCTC	2 cut(s)	342, 852
SapI	GCTCTTC	1 cut(s)	661
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	2 cut(s)	440, 602
Sau3AI	GATC	3 cut(s)	171, 451, 593
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	4 cut(s)	36, 598, 965, 1076
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	3 cut(s)	342, 743, 852
SexAI	ACCWGGT	1 cut(s)	268
SfaNI	GCATC	2 cut(s)	258, 817
SfuI	TTCGAA	1 cut(s)	357
SinI	GGWCC	1 cut(s)	49
SpeI	ACTAGT	1 cut(s)	668
Sse9I	AATT	5 cut(s)	75, 512, 626, 923, 948
SsiI	CCGC	1 cut(s)	440
SspMI	CTAG	3 cut(s)	500, 669, 1014
SstI	GAGCTC	2 cut(s)	342, 852
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	938
TaiI	ACGT	2 cut(s)	483, 985
TaqI	TCGA	5 cut(s)	116, 174, 357, 373, 592
TasI	AATT	5 cut(s)	75, 512, 626, 923, 948
TatI	WGTACW	1 cut(s)	930
TauI	GCSGC	1 cut(s)	442
TfiI	GAWTC	6 cut(s)	98, 188, 553, 569, 895, 992
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	2 cut(s)	720, 943
TseFI	GTSAC	3 cut(s)	28, 533, 1008
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	3 cut(s)	28, 533, 1008
TspDTI	ATGAA	7 cut(s)	108, 251, 765, 777, 810, 834, 960
TspRI	CASTG	2 cut(s)	720, 943
Tth111I	GACNNNGTC	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	49
VspI	ATTAAT	1 cut(s)	515
XapI	RAATTY	2 cut(s)	626, 923
XspI	CTAG	3 cut(s)	500, 669, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.