Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007083

Physical Location & Seq

Genomic Coordinates Reverse (-)

31681507 .. 31690350

Gene Structure 8844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG179800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAATTGGCACCGAACGCAGTGGTTGCCATCATTGGCGGCAATGTCGACTTGAAATCGGTGATGCAGGTCACTGATATCAATCCCATCAGGCCCACCGGCTTGCCAGTCAGGAAAGGCTCCGTCGTCCGGTTCACCGACTGTATTTGCTCTGATGTCAAGGACCGCAATGGGGGTTGCGATGCAGATGCCATCATCGGTCGTCCTGTGAAACTAAGGAGCATCCGAGTGAAGACCACACTGGGTTCCGGCGAGGCTTTGTTGAGAGGTCAAGTCAAGACCCTGTTGCAACAAGTGGAGGAAGAGGCCTCTGTCTCTAAGTTCTCTTTCGAAAACCGACCTTTTCGACATCTTCAAGGCCTTATTGGGAAAACGCTGACAGGACTTCTTGCCCCAACTCTGGCGAACACGCCGCAGGTGAATGATCTCTTGGTTGATAGAAGTGGGAGTAACATTGAGAGACCCTCTCCTCTAGTCCAAGAACAATTGATCTCTCAGGTGGTATGTGACATCTTTGAAGGAAAGAATCAAGGGAGCCTTGAATCACAAAAGAGTATCGTATTGATGGCAGCAGGGATACGTTTCGAGCTGCAGCCGGTGACCAACTGGAGATATATATGGGCTGAGAGGACTAGCTGTGAGATAGGTGTGGCTGAAAAAGAGAAGGCCAAAGCAGCAACAGGTAGGCAACACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

25.29

Weight (kDa)

9.02

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51230 AT5G66230 AT5G66230
malus_domestica	MD02G1132500.v1.1 MD15G1246000.v1.1
prunus_persica	Prupe.7G168100_v2.0.a1
pyrus_communis	pycom02g10400 pycom15g21610
rosa_chinensis	RchiOBHm_Chr2g0099451 RchiOBHm_Chr6g0272671
rosa_laevigata	RLG00000004887 RLG00000016883
rosa_multiflora	Rmu_sc0002542.1_g000003 Rmu_sc0004888.1_g000020
rosa_roxburghii	Rroxscaffold_2G00143070
rosa_rugosa	Rorug02G0079600
rosa_samantha	Rh2AG129600 Rh2BG132700 Rh2CG133400 Rh2DG133700 Rh6AG170300 Rh6CG169700 Rh6DG179800
rosa_wichuraiana	Rw2G009980 Rw5G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	406
Acc36I	ACCTGC	2 cut(s)	58, 406
AccB1I	GGYRCC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	3 cut(s)	39, 166, 413
AfiI	CCNNNNNNNGG	3 cut(s)	129, 172, 400
AgsI	TTSAA	4 cut(s)	55, 356, 518, 542
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AluBI	AGCT	2 cut(s)	589, 636
AluI	AGCT	2 cut(s)	589, 636
Alw26I	GTCTC	2 cut(s)	319, 454
AoxI	GGCC	4 cut(s)	92, 306, 358, 666
ApeKI	GCWGC	4 cut(s)	569, 589, 592, 674
AspS9I	GGNCC	2 cut(s)	93, 163
AsuHPI	GGTGA	4 cut(s)	73, 127, 430, 610
AsuII	TTCGAA	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	4 cut(s)	576, 581, 604, 686
BccI	CCATC	4 cut(s)	38, 95, 200, 559
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciVI	GTATCC	1 cut(s)	570
BcoDI	GTCTC	2 cut(s)	319, 454
BfaI	CTAG	2 cut(s)	473, 633
BfmI	CTRYAG	1 cut(s)	590
BfuAI	ACCTGC	2 cut(s)	58, 406
BfuI	GTATCC	1 cut(s)	570
BisI	GCNGC	6 cut(s)	40, 413, 570, 590, 593, 675
BlsI	GCNGC	6 cut(s)	41, 414, 571, 591, 594, 676
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	93, 163
BmiI	GGNNCC	4 cut(s)	12, 121, 247, 536
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	4 cut(s)	54, 172, 178, 231
BmuI	ACTGGG	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	239
BplI	GAGNNNNNCTC	4 cut(s)	449, 481, 451, 483
BpmI	CTGGAG	1 cut(s)	628
Bpu14I	TTCGAA	1 cut(s)	330
BsaBI	GATNNNNATC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	454
BsaWI	WCCGGW	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 172, 400
Bse118I	RCCGGY	2 cut(s)	98, 595
Bse1I	ACTGG	3 cut(s)	107, 246, 611
Bse3DI	GCAATG	2 cut(s)	49, 175
Bse8I	GATNNNNATC	1 cut(s)	81
BseGI	GGATG	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	3 cut(s)	129, 172, 400
BseMI	GCAATG	2 cut(s)	49, 175
BseMII	CTCAG	2 cut(s)	509, 615
BseNI	ACTGG	3 cut(s)	107, 246, 611
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	4 cut(s)	576, 581, 604, 686
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	4 cut(s)	94, 308, 360, 668
BshNI	GGYRCC	1 cut(s)	10
BsiEI	CGRYCG	1 cut(s)	202
BsiSI	CCGG	4 cut(s)	99, 130, 249, 596
BslI	CCNNNNNNNGG	3 cut(s)	129, 172, 400
BsmAI	GTCTC	2 cut(s)	319, 454
BsnI	GGCC	4 cut(s)	94, 308, 360, 668
Bso31I	GGTCTC	1 cut(s)	454
Bsp119I	TTCGAA	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	424, 489
BspACI	CCGC	3 cut(s)	39, 166, 413
BspANI	GGCC	4 cut(s)	94, 308, 360, 668
BspCNI	CTCAG	2 cut(s)	508, 616
BspLI	GGNNCC	4 cut(s)	12, 121, 247, 536
BspMAI	CTGCAG	1 cut(s)	594
BspMI	ACCTGC	2 cut(s)	58, 406
BspT104I	TTCGAA	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	454
BsrDI	GCAATG	2 cut(s)	49, 175
BsrFI	RCCGGY	2 cut(s)	98, 595
BsrI	ACTGG	3 cut(s)	107, 246, 611
BssAI	RCCGGY	2 cut(s)	98, 595
BssMI	GATC	2 cut(s)	424, 489
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	4 cut(s)	215, 318, 495, 624
BstEII	GGTNACC	1 cut(s)	598
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	427, 492
BstMAI	GTCTC	2 cut(s)	319, 454
BstMBI	GATC	2 cut(s)	424, 489
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 26, 674
BstPI	GGTNACC	1 cut(s)	598
BstSFI	CTRYAG	1 cut(s)	590
BstV1I	GCAGC	4 cut(s)	576, 581, 604, 686
BstV2I	GAAGAC	1 cut(s)	239
BsuI	GTATCC	1 cut(s)	570
BsuRI	GGCC	4 cut(s)	94, 308, 360, 668
BtgZI	GCGATG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	3 cut(s)	27, 72, 239
BveI	ACCTGC	2 cut(s)	58, 406
Cac8I	GCNNGC	1 cut(s)	104
Cfr10I	RCCGGY	2 cut(s)	98, 595
Cfr13I	GGNCC	2 cut(s)	93, 163
DdeI	CTNAG	4 cut(s)	215, 318, 495, 624
DpnI	GATC	2 cut(s)	426, 491
DpnII	GATC	2 cut(s)	424, 489
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco147I	AGGCCT	2 cut(s)	308, 360
Eco31I	GGTCTC	1 cut(s)	454
Eco32I	GATATC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	163
Eco91I	GGTNACC	1 cut(s)	598
EcoO65I	GGTNACC	1 cut(s)	598
EcoRV	GATATC	1 cut(s)	79
FaiI	YATR	4 cut(s)	505, 615, 617, 619
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	6 cut(s)	40, 413, 570, 590, 593, 675
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	6 cut(s)	40, 413, 570, 590, 593, 675
FspBI	CTAG	2 cut(s)	473, 633
GluI	GCNGC	6 cut(s)	40, 413, 570, 590, 593, 675
GsuI	CTGGAG	1 cut(s)	628
HaeIII	GGCC	4 cut(s)	94, 308, 360, 668
HapII	CCGG	4 cut(s)	99, 130, 249, 596
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	526, 542
HpaII	CCGG	4 cut(s)	99, 130, 249, 596
HphI	GGTGA	4 cut(s)	73, 127, 430, 610
Hpy166II	GTNNAC	2 cut(s)	49, 135
Hpy188I	TCNGA	2 cut(s)	154, 227
Hpy188III	TCNNGA	2 cut(s)	112, 277
Hpy8I	GTNNAC	2 cut(s)	49, 135
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	512, 658
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	4 cut(s)	67, 185, 289, 592
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 26, 674
HpyF3I	CTNAG	4 cut(s)	215, 318, 495, 624
HpySE526I	ACGT	1 cut(s)	580
Kzo9I	GATC	2 cut(s)	424, 489
LmnI	GCTCC	3 cut(s)	125, 219, 534
Lsp1109I	GCAGC	4 cut(s)	576, 581, 604, 686
LweI	GCATC	4 cut(s)	54, 172, 178, 231
MaeI	CTAG	2 cut(s)	473, 633
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	4 cut(s)	70, 449, 506, 598
MalI	GATC	2 cut(s)	426, 491
MboI	GATC	2 cut(s)	424, 489
MboII	GAAGA	3 cut(s)	244, 314, 344
MfeI	CAATTG	1 cut(s)	485
MluCI	AATT	2 cut(s)	5, 485
MnlI	CCTC	8 cut(s)	247, 260, 292, 298, 319, 475, 480, 621
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	4 cut(s)	99, 130, 249, 596
MunI	CAATTG	1 cut(s)	485
MwoI	GCNNNNNNNGC	3 cut(s)	17, 26, 674
NdeII	GATC	2 cut(s)	424, 489
NlaIV	GGNNCC	4 cut(s)	12, 121, 247, 536
NmuCI	GTSAC	3 cut(s)	70, 506, 598
NspV	TTCGAA	1 cut(s)	330
PaqCI	CACCTGC	1 cut(s)	406
PceI	AGGCCT	2 cut(s)	308, 360
PfeI	GAWTC	2 cut(s)	526, 542
PkrI	GCNGC	6 cut(s)	41, 414, 571, 591, 594, 676
PspEI	GGTNACC	1 cut(s)	598
PspN4I	GGNNCC	4 cut(s)	12, 121, 247, 536
PspPI	GGNCC	2 cut(s)	93, 163
PstI	CTGCAG	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	227
SalI	GTCGAC	1 cut(s)	47
SatI	GCNGC	6 cut(s)	40, 413, 570, 590, 593, 675
Sau3AI	GATC	2 cut(s)	424, 489
Sau96I	GGNCC	2 cut(s)	93, 163
SfaNI	GCATC	4 cut(s)	54, 172, 178, 231
SfcI	CTRYAG	1 cut(s)	590
SfuI	TTCGAA	1 cut(s)	330
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	5, 485
SseBI	AGGCCT	2 cut(s)	308, 360
SsiI	CCGC	3 cut(s)	39, 166, 413
SspMI	CTAG	2 cut(s)	473, 633
StuI	AGGCCT	2 cut(s)	308, 360
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	4 cut(s)	48, 330, 346, 585
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	2 cut(s)	5, 485
TauI	GCSGC	2 cut(s)	42, 415
TfiI	GAWTC	2 cut(s)	526, 542
TscAI	CASTG	3 cut(s)	27, 79, 246
TseFI	GTSAC	3 cut(s)	70, 506, 598
TseI	GCWGC	4 cut(s)	569, 589, 592, 674
Tsp45I	GTSAC	3 cut(s)	70, 506, 598
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	3 cut(s)	27, 79, 246
VpaK11BI	GGWCC	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	2 cut(s)	473, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.