Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007083

Physical Location & Seq

Genomic Coordinates Reverse (-)

81097745 .. 81099820

Gene Structure 2076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00143070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAAACCCCATCTTCAACACGAAGAGTCACAAGGTCGCAGACTTTGGTCCCCCAGAGCAACAACACCATACCAATTTCAAGGAAGAGTAATGAAGATTCTGAAATGGGTGTATCGAAATCAAGAACAAGAAATGGAAAACAGCAACAACAACAGCAAGACCGGTCTGCTCTGATCGACATAACCAACGATTCTCCGATAGTGGGAGTTGCGATGCAGACGCCGTCATCGGCAATTATGAAACTGAGGAGCATCCGAGCCAAGACCACACCGGGTTCCGGCGAGGCTTTGTTGAGAGGTCAAGTTAAGACCCTGTTGCAACAAGTGGAGGAAGAGGCCGAGCTCTCTAAGCTCTCTTTCGAAAACCGGCCTTTTCGACATCTTCAAGGACTTATTGGGAACTCGCCGACCGGACTACTTGCCCCAACTCCGGCGAACACCCCGCAAGTGAATGATCTCTCGGTTGATGGAAGTGGGAGTAACATTGAGAGACCCTCTCCTCTAGTCCAAGAACAACTGATCTCTCAGGTGGTATGTGACATCTTTGAAGGAAAGAATCAAGCGAGCCTTGAATCACAAAAGAGTATCCTGAGTCGATCTCTGCTGCTTGATTTCTCTGAGAAGTCTGAAATCTCTTTCTCAGAAGAAGAAGATTGCTCTTCTGTGATTTCTAGTGAAAGCAAAGAAAGGTCATCCCCAGATGATGATAGTGCTTCAGTGTGGTCCATTCAGGTCAATGCGAGCACCTGTGATGAAGAAGAGGATGAAGGAGAAGACTACTATCTGAAGGGAGTTCATGAAATTGAAGAAGAGGAAGCAGAATATGATGTTGATCAGCTCTGTGAAGGTATAAGCAAGATTTTTGTGGGTGAGAAGGGAATGATTCCCAAGTTTGAAGGAAAGCACACAAAATTTGTGTACAACAGTGATGATGAAATTGCTGAAGAAGTTGTGGAAGACTCTACTCCACGTACTCCAGATTCAGCTGATGTTCTGTCACCAAGTGCCTTGTGCTTGAAGGGATTGCCTACACCAAGAGGAAAGCACCTGCGATTTCTGGACGAAAACGACTCTGCTTATAGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

362

Amino Acids

39.81

Weight (kDa)

4.58

Isoelectric Point (pI)

63.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51230 AT5G66230 AT5G66230
malus_domestica	MD02G1132500.v1.1 MD15G1246000.v1.1
prunus_persica	Prupe.7G168100_v2.0.a1
pyrus_communis	pycom02g10400 pycom15g21610
rosa_chinensis	RchiOBHm_Chr2g0099451 RchiOBHm_Chr6g0272671
rosa_laevigata	RLG00000004887 RLG00000016883
rosa_multiflora	Rmu_sc0002542.1_g000003 Rmu_sc0004888.1_g000020
rosa_roxburghii	Rroxscaffold_2G00143070
rosa_rugosa	Rorug02G0079600
rosa_samantha	Rh2AG129600 Rh2BG132700 Rh2CG133400 Rh2DG133700 Rh6AG170300 Rh6CG169700 Rh6DG179800
rosa_wichuraiana	Rw2G009980 Rw5G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1056
Acc36I	ACCTGC	1 cut(s)	1056
AciI	CCGC	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	911
AcuI	CTGAAG	3 cut(s)	699, 806, 963
AcyI	GRCGYC	1 cut(s)	221
AdeI	CACNNNGTG	1 cut(s)	1004
AfaI	GTAC	2 cut(s)	920, 973
AfiI	CCNNNNNNNGG	3 cut(s)	203, 278, 430
AgeI	ACCGGT	1 cut(s)	162
AgsI	TTSAA	8 cut(s)	18, 81, 386, 548, 572, 806, 896, 1018
AluBI	AGCT	4 cut(s)	343, 352, 838, 986
AluI	AGCT	4 cut(s)	343, 352, 838, 986
Alw21I	GWGCWC	2 cut(s)	345, 746
Alw26I	GTCTC	1 cut(s)	484
AoxI	GGCC	2 cut(s)	336, 368
ApeKI	GCWGC	1 cut(s)	604
ApoI	RAATTY	1 cut(s)	911
AsiGI	ACCGGT	1 cut(s)	162
AspS9I	GGNCC	2 cut(s)	49, 723
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	2 cut(s)	881, 990
AsuII	TTCGAA	1 cut(s)	360
AvaII	GGWCC	2 cut(s)	49, 723
BanII	GRGCYC	1 cut(s)	345
BbsI	GAAGAC	2 cut(s)	780, 963
Bbv12I	GWGCWC	2 cut(s)	345, 746
BbvI	GCAGC	1 cut(s)	591
BccI	CCATC	2 cut(s)	19, 461
BceAI	ACGGC	1 cut(s)	208
BciVI	GTATCC	1 cut(s)	596
BclI	TGATCA	1 cut(s)	832
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	484
BfaI	CTAG	2 cut(s)	503, 672
BfuAI	ACCTGC	1 cut(s)	1056
BfuI	GTATCC	1 cut(s)	596
BisI	GCNGC	1 cut(s)	605
BlsI	GCNGC	1 cut(s)	606
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	2 cut(s)	49, 723
BmgT120I	GGNCC	2 cut(s)	49, 723
BmiI	GGNNCC	2 cut(s)	51, 277
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	2 cut(s)	204, 261
BoxI	GACNNNNGTC	1 cut(s)	47
BpiI	GAAGAC	2 cut(s)	780, 963
BplI	GAGNNNNNCTC	6 cut(s)	479, 511, 481, 513, 583, 615
BpmI	CTGGAG	1 cut(s)	960
Bpu14I	TTCGAA	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	971
BsaBI	GATNNNNATC	1 cut(s)	831
BsaHI	GRCGYC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	484
BsaWI	WCCGGW	2 cut(s)	162, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 278, 430
Bse118I	RCCGGY	2 cut(s)	162, 366
Bse8I	GATNNNNATC	1 cut(s)	831
BseGI	GGATG	3 cut(s)	252, 692, 769
BseJI	GATNNNNATC	1 cut(s)	831
BseLI	CCNNNNNNNGG	3 cut(s)	203, 278, 430
BseMII	CTCAG	5 cut(s)	236, 539, 581, 609, 654
BseRI	GAGGAG	2 cut(s)	262, 489
BseXI	GCAGC	1 cut(s)	591
Bsh1285I	CGRYCG	1 cut(s)	411
BshFI	GGCC	2 cut(s)	338, 370
BshTI	ACCGGT	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	411
BsiHKAI	GWGCWC	2 cut(s)	345, 746
BsiSI	CCGG	6 cut(s)	163, 272, 279, 367, 411, 431
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	203, 278, 430
BsmAI	GTCTC	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	338, 370
Bso31I	GGTCTC	1 cut(s)	484
Bsp119I	TTCGAA	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	345, 746
Bsp1407I	TGTACA	1 cut(s)	918
Bsp143I	GATC	5 cut(s)	174, 454, 519, 596, 832
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	2 cut(s)	338, 370
BspCNI	CTCAG	5 cut(s)	237, 538, 582, 610, 653
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	2 cut(s)	51, 277
BspMI	ACCTGC	1 cut(s)	1056
BspQI	GCTCTTC	1 cut(s)	664
BspT104I	TTCGAA	1 cut(s)	360
BspTNI	GGTCTC	1 cut(s)	484
BsrFI	RCCGGY	2 cut(s)	162, 366
BsrGI	TGTACA	1 cut(s)	918
BssAI	RCCGGY	2 cut(s)	162, 366
BssMI	GATC	5 cut(s)	174, 454, 519, 596, 832
BssNI	GRCGYC	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	926
Bst6I	CTCTTC	6 cut(s)	19, 80, 327, 664, 753, 804
BstACI	GRCGYC	1 cut(s)	221
BstAUI	TGTACA	1 cut(s)	918
BstBAI	YACGTR	1 cut(s)	971
BstBI	TTCGAA	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	565, 742
BstDEI	CTNAG	6 cut(s)	245, 348, 525, 590, 618, 640
BstF5I	GGATG	3 cut(s)	252, 692, 769
BstKTI	GATC	5 cut(s)	177, 457, 522, 599, 835
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	5 cut(s)	174, 454, 519, 596, 832
BstMCI	CGRYCG	1 cut(s)	411
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstPAI	GACNNNNGTC	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	591
BstV2I	GAAGAC	2 cut(s)	780, 963
BsuI	GTATCC	1 cut(s)	596
BsuRI	GGCC	2 cut(s)	338, 370
BtgZI	GCGATG	1 cut(s)	227
BtsCI	GGATG	3 cut(s)	252, 692, 769
BtsIMutI	CAGTG	2 cut(s)	723, 931
BveI	ACCTGC	1 cut(s)	1056
Cac8I	GCNNGC	2 cut(s)	565, 742
CciI	TCATGA	1 cut(s)	796
Cfr10I	RCCGGY	2 cut(s)	162, 366
Cfr13I	GGNCC	2 cut(s)	49, 723
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	919, 972
CspAI	ACCGGT	1 cut(s)	162
CviAII	CATG	1 cut(s)	797
CviJI	RGCY	9 cut(s)	260, 287, 338, 343, 352, 370, 567, 838, 986
CviKI_1	RGCY	9 cut(s)	260, 287, 338, 343, 352, 370, 567, 838, 986
CviQI	GTAC	2 cut(s)	919, 972
DdeI	CTNAG	6 cut(s)	245, 348, 525, 590, 618, 640
DpnI	GATC	5 cut(s)	176, 456, 521, 598, 834
DpnII	GATC	5 cut(s)	174, 454, 519, 596, 832
DraIII	CACNNNGTG	1 cut(s)	1004
Eam1104I	CTCTTC	6 cut(s)	19, 80, 327, 664, 753, 804
EarI	CTCTTC	6 cut(s)	19, 80, 327, 664, 753, 804
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	49, 723
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	3 cut(s)	699, 806, 963
EcoICRI	GAGCTC	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	1 cut(s)	800
FaiI	YATR	8 cut(s)	71, 182, 239, 535, 798, 825, 851, 1080
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	796
FauI	CCCGC	1 cut(s)	450
FbaI	TGATCA	1 cut(s)	832
Fnu4HI	GCNGC	1 cut(s)	605
FokI	GGATG	3 cut(s)	239, 679, 776
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	605
FspBI	CTAG	2 cut(s)	503, 672
GluI	GCNGC	1 cut(s)	605
GsuI	CTGGAG	1 cut(s)	960
HaeIII	GGCC	2 cut(s)	338, 370
HapII	CCGG	6 cut(s)	163, 272, 279, 367, 411, 431
HgaI	GACGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	800
HpaII	CCGG	6 cut(s)	163, 272, 279, 367, 411, 431
HphI	GGTGA	2 cut(s)	881, 990
Hpy166II	GTNNAC	1 cut(s)	919
Hpy188I	TCNGA	8 cut(s)	103, 174, 198, 257, 619, 628, 643, 786
Hpy188III	TCNNGA	5 cut(s)	123, 589, 797, 977, 1058
Hpy8I	GTNNAC	1 cut(s)	919
HpyAV	CCTTC	7 cut(s)	542, 761, 781, 839, 868, 890, 1012
HpyCH4III	ACNGT	1 cut(s)	926
HpyCH4IV	ACGT	1 cut(s)	970
HpyCH4V	TGCA	2 cut(s)	217, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	6 cut(s)	245, 348, 525, 590, 618, 640
HpySE526I	ACGT	1 cut(s)	970
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	800
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	5 cut(s)	174, 454, 519, 596, 832
LguI	GCTCTTC	1 cut(s)	664
LmnI	GCTCC	1 cut(s)	249
Lsp1109I	GCAGC	1 cut(s)	591
LweI	GCATC	2 cut(s)	204, 261
MaeI	CTAG	2 cut(s)	503, 672
MaeII	ACGT	1 cut(s)	970
MaeIII	GTNAC	4 cut(s)	28, 479, 536, 996
MalI	GATC	5 cut(s)	176, 456, 521, 598, 834
MboI	GATC	5 cut(s)	174, 454, 519, 596, 832
MhlI	GDGCHC	2 cut(s)	345, 746
MluCI	AATT	5 cut(s)	75, 234, 801, 911, 936
MlyI	GAGTC	4 cut(s)	36, 601, 953, 1064
MseI	TTAA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	986
MspI	CCGG	6 cut(s)	163, 272, 279, 367, 411, 431
MspR9I	CCNGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	349
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	5 cut(s)	174, 454, 519, 596, 832
NlaIII	CATG	1 cut(s)	800
NlaIV	GGNNCC	2 cut(s)	51, 277
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	3 cut(s)	28, 536, 996
NspV	TTCGAA	1 cut(s)	360
PagI	TCATGA	1 cut(s)	796
PaqCI	CACCTGC	1 cut(s)	1056
PciSI	GCTCTTC	1 cut(s)	664
PfeI	GAWTC	6 cut(s)	98, 191, 556, 572, 883, 980
PflFI	GACNNNGTC	1 cut(s)	223
PinAI	ACCGGT	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	606
PleI	GAGTC	4 cut(s)	35, 600, 953, 1064
PpsI	GAGTC	4 cut(s)	35, 600, 953, 1064
Ppu21I	YACGTR	1 cut(s)	971
PshAI	GACNNNNGTC	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	51, 277
PspPI	GGNCC	2 cut(s)	49, 723
PsyI	GACNNNGTC	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	986
RsaI	GTAC	2 cut(s)	920, 973
RsaNI	GTAC	2 cut(s)	919, 972
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	1 cut(s)	664
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	1 cut(s)	605
Sau3AI	GATC	5 cut(s)	174, 454, 519, 596, 832
Sau96I	GGNCC	2 cut(s)	49, 723
SchI	GAGTC	4 cut(s)	36, 601, 953, 1064
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	2 cut(s)	345, 746
SfaNI	GCATC	2 cut(s)	204, 261
SfuI	TTCGAA	1 cut(s)	360
SinI	GGWCC	2 cut(s)	49, 723
Sse9I	AATT	5 cut(s)	75, 234, 801, 911, 936
SsiI	CCGC	1 cut(s)	443
SspMI	CTAG	2 cut(s)	503, 672
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	926
TaiI	ACGT	1 cut(s)	973
TaqI	TCGA	5 cut(s)	116, 177, 360, 376, 595
TasI	AATT	5 cut(s)	75, 234, 801, 911, 936
TatI	WGTACW	1 cut(s)	918
TfiI	GAWTC	6 cut(s)	98, 191, 556, 572, 883, 980
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	723, 931
TseFI	GTSAC	3 cut(s)	28, 536, 996
TseI	GCWGC	1 cut(s)	604
Tsp45I	GTSAC	3 cut(s)	28, 536, 996
TspDTI	ATGAA	7 cut(s)	108, 254, 768, 780, 785, 813, 948
TspRI	CASTG	2 cut(s)	723, 931
Tth111I	GACNNNGTC	1 cut(s)	223
VpaK11BI	GGWCC	2 cut(s)	49, 723
XapI	RAATTY	1 cut(s)	911
XspI	CTAG	2 cut(s)	503, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.