MD02G1237600.v1.1

biological adhesion

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
28537481 .. 28541834
4354 bp
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UTR
Exon/CDS
Intron
MD02G1237600.v1.1.491

Sequence Viewer

Length: 2520 bp
ATGGACTTTGTGTACTTTAAAGACCAGCAGAACTTGAAAAAGCTTGAGAAAATTGAGAAGTTTGAAGCTCAACAGACCGTGGAACTTAAGAAAATTATTGTGCTGCGTGATGCTGAAAACAAAGAGCTTGCCAAACATCTCGAGATAACAGAGGATCAAATTAATGAACTCGAGAAACATCTTGCGCAGACTGAAGCTGATAAGGAGACACTTAAGAAAAAACTTCTTGGAGTGCAGAATGAAGCTAAAATGAACAAACAGCTCAGAATGAAAGTGCTTGAGCTGCAAAATGTAGCTGATCAAAACAAAAAACTTAAGAACGATCTTGAGAAAAAGCTTGAGCAGAGCGAATCTCGGAAGAAAGAGCTTAGTGAAGAACTTCAGAAGATTAAGGATAAAAAGGAAGAGCTTGAGGAAATTCTTGACATAAATGAGGCTGAAATGGAAGAGCTTGAGGAAGCTCTCGAGAACATTGAGGCTGAAAAGGAAGATCTTGAGGCTGAAAAGGAAGCTCTTGAAGACGAGCTTGTGCAGATCGAGGTTGATAAGAAGGCATTTAACAAGAAAGTGCTTGATTTGCAGAGTGAGATTGATCAAAACAAAGAGCACCAGAATGATCTTGAGAAAATGATTGAACAGTGTGAAGCTCAGAAGAAAAAGCTTAAAGAAGAGCTCGAGGAGAGTGAGATGCAACTGCAACACACGAAGAATGAGCTTGGGAAAGTGATTGAACAGAAGGATGCTGAAAAGGAAGCTCTTATGCAAAAGCTTGGGAAAACGGAAGCCAGTAAGGTCGAGCTTATGATAATTATTGCGCAGCGGGATGCTGAAAAGAAAGATCTTACCAAACATCTGGATAACACAGAGGCTCAAATTGATGAATTAGAGAAAGATCTTGAGCAGACTGAAGCTGATAAGAAGGCACTTAGGAAAAAAGTTCTTGAGCTGCAGAATGAAGCTAAGATGAACAAACAGCTTAGAATGAAAGTTCTTGAGCTGCAAAATGTGGCTGATGAAAACAAAAAACTTAAGAACGATCTTGAGAAAAAGCTCGAGCAGAGCGAATCTCAGAAGGAAGAGCTTAGGGAAGAACTTGAAGAGATTGAGGCTGAAAAGGAAGCTCTTCAGGCTGAAAAGGAAGGCCTTGAGGAAGATCTTGAGAAAATTGAGGCTGAAAAGGAAGATCTCGAGGCAATTGAGGCTGAAAAGGAAGATCTTGAGGCTGAAAAGGAAGCTCTTGAGGCTGAAAAGGAAGATCTTGAGGCTGAAAAGGAAGCTCTTGAGACTGAAAAGGATGCTCTTGAAGACGAGATTGTGCAGATCAAGGCTCACAAGATGGCACTTAACAAGAAAGTGCATGAGTTGCAGTGTGAGATTGATCGAAACAAAGAGCATCAGAATGATCTTGAGAAAAAGATTGAACAGAGTGAAGCTCAGAAGAAAGAGCTTAAAGGAGAGCTTGAGAAGAATGAGACCCAACTGAAACAAATGAAGAATGAGCTTGAGAAAGTGATTGAACAGAAGGATGCTGAAAAGGAATCTCTTATGATAAAGCTTAGGCAAACTGAAGCTGGAAAGGGCGAGCTTAAGAAATCCCTTGAACATTTTGGGATGGAACTGCAAGAGCTGGCGAAAATGAGCGAGGAGAAATCACATAGGTTCATCACGCTTGAGAATGATTTTCAGAAAAGTTTGGAGCAAAGTGAATGTCAGAAGAAAGAGCTTGAGAAGATTCAAGCTGAAAAGATTAACCTCAATATAGCTCTTGAGCAGAAAAGTAGAGCTTACAAAGATGGAGCCTTTCTTTTTAAGAAGAAACAACTTGAGAACATAGAGCTTACCAAGAAAATGGCTGAGCTAGAAAGGGAAGCTGATCTAAACAAAGAGCTTAAAATTAATTTTGAGAGAGAGCTTGAGCGTAATGAATGTCAGCAGAAAGAGCTTGAGCAGACTAGAGCTGAAAAGCTAGAGCTTACGTTTCAGGTTGAACAGACTAAAGCTGAAAAGATAAATCTTATGACAGCTCTTGCACAGATGGAGATGCAACTGCACGAAATGAATGGGACGGTTGTTTTAGAGCAAAAGAAGGCTGATGAGTTGGCGGCATCTTTGGCCAGAGAACGAAAGAAACGGAAGAGTTATCGGAAAAAGCTCCAGTCTGCCAACAGTGAACTGGAAAAGAAGCTTGATGGTAAGTCTGCCAGCAGTGAATTGGAAAAGAAGCTTGATGATGTACAGGATTCTGCCAACAGAGAATTGGAAAAGAAGCTTGATGATGTACAGGAGTCTTCCAGCAATGAATTGGAAAAGAAGCTTGATGATGTACAGGAGTCTGCCGGCAGCAATGAATTGGAAAAGAAGCTTGATGATGTACAGGAGTCTGCCGGCAGTGAATTGGAAAAGAAGCTTGATGATGTACAGGAGTCTGGCAACACTGAATTGGAAAAGAAGGTTGATGATGAACAGAAGGAAAGCTCAGATGAGATCGAAGTTTCTGATGATGATTGGCTTAAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

840

Amino Acids

98.02

Weight (kDa)

4.8

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 186, 816
AciI CCGC 2 cut(s) 820, 2102
AclWI GGATC 1 cut(s) 162
AcoI YGGCCR 1 cut(s) 2112
AcsI RAATTY 1 cut(s) 417
AcuI CTGAAG 5 cut(s) 213, 365, 927, 1109, 1587
AfaI GTAC 6 cut(s) 14, 2235, 2280, 2325, 2373, 2418
AflII CTTAAG 5 cut(s) 86, 212, 314, 1028, 1586
Alw21I GWGCWC 2 cut(s) 609, 675
Alw26I GTCTC 3 cut(s) 200, 1277, 1466
AlwI GGATC 1 cut(s) 162
Ama87I CYCGRG 6 cut(s) 140, 170, 464, 674, 1052, 1187
AoxI GGCC 2 cut(s) 1141, 2112
ApeKI GCWGC 6 cut(s) 103, 283, 817, 946, 997, 2340
ApoI RAATTY 1 cut(s) 417
ArsI GACNNNNNNTTYG 2 cut(s) 1693, 1725
AseI ATTAAT 2 cut(s) 162, 1896
Asp700I GAANNNNTTC 2 cut(s) 378, 1122
AspLEI GCGC 2 cut(s) 187, 817
AvaI CYCGRG 6 cut(s) 140, 170, 464, 674, 1052, 1187
BalI TGGCCA 1 cut(s) 2114
BanII GRGCYC 1 cut(s) 675
BbsI GAAGAC 3 cut(s) 525, 1311, 2280
Bbv12I GWGCWC 2 cut(s) 609, 675
BbvI GCAGC 6 cut(s) 90, 270, 829, 933, 984, 2352
BccI CCATC 5 cut(s) 1330, 1606, 1787, 2029, 2183
BclI TGATCA 2 cut(s) 298, 592
BcoDI GTCTC 3 cut(s) 200, 1277, 1466
BfaI CTAG 3 cut(s) 1859, 1953, 1967
BfmI CTRYAG 1 cut(s) 947
BfrI CTTAAG 5 cut(s) 86, 212, 314, 1028, 1586
BglII AGATCT 7 cut(s) 490, 838, 892, 1153, 1183, 1213, 1255
BisI GCNGC 7 cut(s) 104, 284, 818, 947, 998, 2103, 2341
BlpI GCTNAGC 1 cut(s) 1854
BlsI GCNGC 7 cut(s) 105, 285, 819, 948, 999, 2104, 2342
BmeT110I CYCGRG 6 cut(s) 140, 170, 464, 674, 1052, 1187
BmiI GGNNCC 1 cut(s) 1798
BmsI GCATC 9 cut(s) 100, 678, 730, 814, 1285, 1402, 1516, 2031, 2114
BpiI GAAGAC 3 cut(s) 525, 1311, 2280
BplI GAGNNNNNCTC 6 cut(s) 337, 369, 1051, 1083, 1417, 1449
BpmI CTGGAG 1 cut(s) 2138
Bpu10I CCTNAGC 2 cut(s) 1082, 1556
Bpu1102I GCTNAGC 1 cut(s) 1854
BsaI GGTCTC 1 cut(s) 1466
BsaJI CCNNGG 1 cut(s) 78
Bse118I RCCGGY 2 cut(s) 2336, 2384
Bse1I ACTGG 3 cut(s) 786, 2155, 2178
Bse3DI GCAATG 2 cut(s) 2302, 2350
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 5 cut(s) 745, 829, 1300, 1531, 1617
BseMI GCAATG 2 cut(s) 2302, 2350
BseMII CTCAG 6 cut(s) 277, 662, 1082, 1448, 1845, 2490
BseNI ACTGG 3 cut(s) 786, 2155, 2178
BseRI GAGGAG 2 cut(s) 692, 1658
BseXI GCAGC 6 cut(s) 90, 270, 829, 933, 984, 2352
BsgI GTGCAG 4 cut(s) 254, 551, 1337, 2033
BshFI GGCC 2 cut(s) 1143, 2114
BsiHKAI GWGCWC 2 cut(s) 609, 675
BsiHKCI CYCGRG 6 cut(s) 140, 170, 464, 674, 1052, 1187
BsiSI CCGG 2 cut(s) 2337, 2385
BslFI GGGAC 1 cut(s) 2077
BsmAI GTCTC 3 cut(s) 200, 1277, 1466
BsmFI GGGAC 1 cut(s) 2077
BsnI GGCC 2 cut(s) 1143, 2114
Bso31I GGTCTC 1 cut(s) 1466
BsoBI CYCGRG 6 cut(s) 140, 170, 464, 674, 1052, 1187
Bsp1286I GDGCHC 2 cut(s) 609, 675
Bsp1407I TGTACA 5 cut(s) 2233, 2278, 2323, 2371, 2416
Bsp1720I GCTNAGC 1 cut(s) 1854
BspACI CCGC 2 cut(s) 820, 2102
BspANI GGCC 2 cut(s) 1143, 2114
BspCNI CTCAG 6 cut(s) 276, 661, 1081, 1447, 1846, 2489
BspLI GGNNCC 1 cut(s) 1798
BspMAI CTGCAG 1 cut(s) 951
BspPI GGATC 1 cut(s) 162
BspQI GCTCTTC 5 cut(s) 399, 441, 663, 1071, 1128
BspTI CTTAAG 5 cut(s) 86, 212, 314, 1028, 1586
BspTNI GGTCTC 1 cut(s) 1466
BsrDI GCAATG 2 cut(s) 2302, 2350
BsrFI RCCGGY 2 cut(s) 2336, 2384
BsrGI TGTACA 5 cut(s) 2233, 2278, 2323, 2371, 2416
BsrI ACTGG 3 cut(s) 786, 2155, 2178
BssAI RCCGGY 2 cut(s) 2336, 2384
BssECI CCNNGG 1 cut(s) 78
Bst4CI ACNGT 4 cut(s) 79, 639, 2068, 2168
Bst6I CTCTTC 7 cut(s) 399, 441, 663, 1071, 1092, 1128, 2129
BstAFI CTTAAG 5 cut(s) 86, 212, 314, 1028, 1586
BstAPI GCANNNNNTGC 1 cut(s) 1363
BstAUI TGTACA 5 cut(s) 2233, 2278, 2323, 2371, 2416
BstC8I GCNNGC 6 cut(s) 129, 1583, 1629, 2203, 2338, 2386
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 5 cut(s) 745, 829, 1300, 1531, 1617
BstHHI GCGC 2 cut(s) 187, 817
BstMAI GTCTC 3 cut(s) 200, 1277, 1466
BstMWI GCNNNNNNNGC 8 cut(s) 283, 577, 1127, 1199, 1241, 1363, 1939, 2111
BstSFI CTRYAG 1 cut(s) 947
BstV1I GCAGC 6 cut(s) 90, 270, 829, 933, 984, 2352
BstV2I GAAGAC 3 cut(s) 525, 1311, 2280
BstX2I RGATCY 7 cut(s) 490, 838, 892, 1153, 1183, 1213, 1255
BstXI CCANNNNNNTGG 2 cut(s) 853, 1849
BstYI RGATCY 7 cut(s) 490, 838, 892, 1153, 1183, 1213, 1255
BsuRI GGCC 2 cut(s) 1143, 2114
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 5 cut(s) 745, 829, 1300, 1531, 1617
BtsI GCAGTG 3 cut(s) 1373, 2212, 2395
BtsIMutI CAGTG 6 cut(s) 644, 1373, 2173, 2212, 2395, 2433
Cac8I GCNNGC 6 cut(s) 129, 1583, 1629, 2203, 2338, 2386
CfoI GCGC 2 cut(s) 187, 817
Cfr10I RCCGGY 2 cut(s) 2336, 2384
Csp6I GTAC 6 cut(s) 13, 2234, 2279, 2324, 2372, 2417
CviAII CATG 1 cut(s) 1358
CviQI GTAC 6 cut(s) 13, 2234, 2279, 2324, 2372, 2417
DraI TTTAAA 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 2112
Eam1104I CTCTTC 7 cut(s) 399, 441, 663, 1071, 1092, 1128, 2129
EarI CTCTTC 7 cut(s) 399, 441, 663, 1071, 1092, 1128, 2129
Ecl136II GAGCTC 1 cut(s) 673
Eco147I AGGCCT 1 cut(s) 1143
Eco24I GRGCYC 1 cut(s) 675
Eco31I GGTCTC 1 cut(s) 1466
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 5 cut(s) 213, 365, 927, 1109, 1587
Eco88I CYCGRG 6 cut(s) 140, 170, 464, 674, 1052, 1187
EcoICRI GAGCTC 1 cut(s) 673
EcoT38I GRGCYC 1 cut(s) 675
FaeI CATG 1 cut(s) 1361
FaiI YATR 9 cut(s) 428, 761, 803, 1359, 1547, 1656, 1760, 1832, 2018
FalI AAGNNNNNCTT 6 cut(s) 510, 542, 1443, 1475, 1768, 1800
FaqI GGGAC 1 cut(s) 2077
FatI CATG 1 cut(s) 1357
FauI CCCGC 1 cut(s) 813
FbaI TGATCA 2 cut(s) 298, 592
Fnu4HI GCNGC 7 cut(s) 104, 284, 818, 947, 998, 2103, 2341
FokI GGATG 5 cut(s) 752, 836, 1307, 1538, 1624
FriOI GRGCYC 1 cut(s) 675
Fsp4HI GCNGC 7 cut(s) 104, 284, 818, 947, 998, 2103, 2341
FspBI CTAG 3 cut(s) 1859, 1953, 1967
FspI TGCGCA 2 cut(s) 186, 816
GlaI GCGC 2 cut(s) 186, 816
GluI GCNGC 7 cut(s) 104, 284, 818, 947, 998, 2103, 2341
GsuI CTGGAG 1 cut(s) 2138
HaeIII GGCC 2 cut(s) 1143, 2114
HapII CCGG 2 cut(s) 2337, 2385
HhaI GCGC 2 cut(s) 187, 817
Hin1II CATG 1 cut(s) 1361
Hin6I GCGC 2 cut(s) 185, 815
HinP1I GCGC 2 cut(s) 185, 815
HinfI GANTC 9 cut(s) 350, 1064, 1538, 1732, 2240, 2285, 2330, 2378, 2423
HpaII CCGG 2 cut(s) 2337, 2385
Hpy166II GTNNAC 2 cut(s) 13, 2171
Hpy8I GTNNAC 2 cut(s) 13, 2171
HpyAV CCTTC 9 cut(s) 544, 730, 913, 1066, 1133, 1516, 2080, 2443, 2461
HpyCH4III ACNGT 4 cut(s) 79, 639, 2068, 2168
HpyCH4IV ACGT 1 cut(s) 1976
HpyF10VI GCNNNNNNNGC 8 cut(s) 283, 577, 1127, 1199, 1241, 1363, 1939, 2111
HpySE526I ACGT 1 cut(s) 1976
Hsp92II CATG 1 cut(s) 1361
HspAI GCGC 2 cut(s) 185, 815
KroI GCCGGC 2 cut(s) 2336, 2384
KroNI GCCGGC 2 cut(s) 2338, 2386
Ksp22I TGATCA 2 cut(s) 298, 592
LguI GCTCTTC 5 cut(s) 399, 441, 663, 1071, 1128
LmnI GCTCC 3 cut(s) 1696, 1796, 2157
Lsp1109I GCAGC 6 cut(s) 90, 270, 829, 933, 984, 2352
LweI GCATC 9 cut(s) 100, 678, 730, 814, 1285, 1402, 1516, 2031, 2114
MaeI CTAG 3 cut(s) 1859, 1953, 1967
MaeII ACGT 1 cut(s) 1976
MfeI CAATTG 1 cut(s) 1194
MflI RGATCY 7 cut(s) 490, 838, 892, 1153, 1183, 1213, 1255
MhlI GDGCHC 2 cut(s) 609, 675
MlsI TGGCCA 1 cut(s) 2114
MluNI TGGCCA 1 cut(s) 2114
MlyI GAGTC 4 cut(s) 2294, 2339, 2387, 2432
Mox20I TGGCCA 1 cut(s) 2114
MroNI GCCGGC 2 cut(s) 2336, 2384
MroXI GAANNNNTTC 2 cut(s) 378, 1122
MscI TGGCCA 1 cut(s) 2114
MslI CAYNNNNRTG 2 cut(s) 612, 1398
Msp20I TGGCCA 1 cut(s) 2114
MspA1I CMGCKG 1 cut(s) 820
MspCI CTTAAG 5 cut(s) 86, 212, 314, 1028, 1586
MspI CCGG 2 cut(s) 2337, 2385
MunI CAATTG 1 cut(s) 1194
MwoI GCNNNNNNNGC 8 cut(s) 283, 577, 1127, 1199, 1241, 1363, 1939, 2111
NaeI GCCGGC 2 cut(s) 2338, 2386
NgoMIV GCCGGC 2 cut(s) 2336, 2384
NlaIII CATG 1 cut(s) 1361
NlaIV GGNNCC 1 cut(s) 1798
NsbI TGCGCA 2 cut(s) 186, 816
PaeR7I CTCGAG 6 cut(s) 140, 170, 464, 674, 1052, 1187
PceI AGGCCT 1 cut(s) 1143
PciSI GCTCTTC 5 cut(s) 399, 441, 663, 1071, 1128
PcsI WCGNNNNNNNCGW 1 cut(s) 1059
PdiI GCCGGC 2 cut(s) 2338, 2386
PdmI GAANNNNTTC 2 cut(s) 378, 1122
PfeI GAWTC 5 cut(s) 350, 1064, 1538, 1732, 2240
PkrI GCNGC 7 cut(s) 105, 285, 819, 948, 999, 2104, 2342
PleI GAGTC 4 cut(s) 2293, 2338, 2386, 2431
PpsI GAGTC 4 cut(s) 2293, 2338, 2386, 2431
PshBI ATTAAT 2 cut(s) 162, 1896
Psp124BI GAGCTC 1 cut(s) 675
PspN4I GGNNCC 1 cut(s) 1798
PspXI VCTCGAGB 2 cut(s) 674, 1052
PstI CTGCAG 1 cut(s) 951
PsuI RGATCY 7 cut(s) 490, 838, 892, 1153, 1183, 1213, 1255
RsaI GTAC 6 cut(s) 14, 2235, 2280, 2325, 2373, 2418
RsaNI GTAC 6 cut(s) 13, 2234, 2279, 2324, 2372, 2417
RseI CAYNNNNRTG 2 cut(s) 612, 1398
SacI GAGCTC 1 cut(s) 675
SapI GCTCTTC 5 cut(s) 399, 441, 663, 1071, 1128
SatI GCNGC 7 cut(s) 104, 284, 818, 947, 998, 2103, 2341
SchI GAGTC 4 cut(s) 2294, 2339, 2387, 2432
SduI GDGCHC 2 cut(s) 609, 675
SfaNI GCATC 9 cut(s) 100, 678, 730, 814, 1285, 1402, 1516, 2031, 2114
SfcI CTRYAG 1 cut(s) 947
Sfr274I CTCGAG 6 cut(s) 140, 170, 464, 674, 1052, 1187
SlaI CTCGAG 6 cut(s) 140, 170, 464, 674, 1052, 1187
SmiMI CAYNNNNRTG 2 cut(s) 612, 1398
SseBI AGGCCT 1 cut(s) 1143
SsiI CCGC 2 cut(s) 820, 2102
SspMI CTAG 3 cut(s) 1859, 1953, 1967
SstI GAGCTC 1 cut(s) 675
StuI AGGCCT 1 cut(s) 1143
TaaI ACNGT 4 cut(s) 79, 639, 2068, 2168
TaiI ACGT 1 cut(s) 1979
TatI WGTACW 6 cut(s) 12, 2233, 2278, 2323, 2371, 2416
TauI GCSGC 1 cut(s) 2105
TfiI GAWTC 5 cut(s) 350, 1064, 1538, 1732, 2240
TscAI CASTG 6 cut(s) 644, 1373, 2173, 2212, 2395, 2440
TseI GCWGC 6 cut(s) 103, 283, 817, 946, 997, 2340
TspGWI ACGGA 2 cut(s) 794, 2146
TspRI CASTG 6 cut(s) 644, 1373, 2173, 2212, 2395, 2440
Vha464I CTTAAG 5 cut(s) 86, 212, 314, 1028, 1586
VspI ATTAAT 2 cut(s) 162, 1896
XapI RAATTY 1 cut(s) 417
XcmI CCANNNNNNNNNTGG 4 cut(s) 2170, 2209, 2254, 2299
XhoI CTCGAG 6 cut(s) 140, 170, 464, 674, 1052, 1187
XmnI GAANNNNTTC 2 cut(s) 378, 1122
XspI CTAG 3 cut(s) 1859, 1953, 1967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.