Rorug01G0122000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005542
Physical Location & Seq
Forward (+)
21154113 .. 21154673
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0122000.1

Sequence Viewer

Length: 561 bp
ATGACTTGCTACTTCTCAAAAGGGTCTATTCTAGTCATTCTCCTTTTAGCAATTCTCTTGGTTAGTGAAGCTCAGCAATGTCGTCCAAGCGGAAGAATCAGAGGAAGGAAGCCCCCTCCTGGACAATGTAACCAGCAGGATGACTCTGACTGCTGTAAAGCTGGAAAAATGTACCCAACCTACACTTGCTCACCACCAATGTCTGGTAACACCAAGGCATACCTCACTCTCAACAGCTTTGAGGCAGGTGGTGACGGAGGAGGCCCATCCGAATGTGACGGCAAGTATCACAATGACAATACTCCAGTTGTTGCATTATCTACAGGATGGTACAATGGTGGATCAAGGTGCCTTAACAACATCAGAATTAATGGAAATGGGCGTAGCGTGGTGGCCATGGTGGTGGATGAGTGTGACTCTACTGAGGGATGTGATGCAGACCATGATTATCAGCCTCCATGTCCCAACAACATTGTTGATGCCTCCAAGGCTGTCTGGAAAGCCTTGGGTGTATCTAAGGACAACTGGGGTGGCTTGGATATCACATGGTTCGACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.94

Weight (kDa)

5.08

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 17 - 186 5e-66 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 203
AciI CCGC 1 cut(s) 90
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 393
AfaI GTAC 2 cut(s) 173, 332
AfiI CCNNNNNNNGG 2 cut(s) 119, 203
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 3 cut(s) 71, 161, 237
AluI AGCT 3 cut(s) 71, 161, 237
AlwI GGATC 1 cut(s) 349
AoxI GGCC 2 cut(s) 262, 393
AseI ATTAAT 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 183, 263
BaeI ACNNNNGTAYC 2 cut(s) 322, 355
BalI TGGCCA 1 cut(s) 395
BanI GGYRCC 1 cut(s) 348
BccI CCATC 2 cut(s) 274, 321
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 120
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 488
BlpI GCTNAGC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 2 cut(s) 424, 469
BmuI ACTGGG 1 cut(s) 535
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 1 cut(s) 288
Bpu1102I GCTNAGC 1 cut(s) 72
BsaJI CCNNGG 4 cut(s) 213, 396, 486, 504
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 203
Bse1I ACTGG 2 cut(s) 305, 530
Bse3DI GCAATG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 4 cut(s) 213, 396, 486, 504
BseGI GGATG 5 cut(s) 145, 266, 332, 412, 434
BseLI CCNNNNNNNGG 2 cut(s) 119, 203
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 86, 414
BseNI ACTGG 2 cut(s) 305, 530
BseRI GAGGAG 1 cut(s) 273
BshFI GGCC 2 cut(s) 264, 395
BshNI GGYRCC 1 cut(s) 348
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 2 cut(s) 119, 203
BsmFI GGGAC 1 cut(s) 447
BsnI GGCC 2 cut(s) 264, 395
Bsp143I GATC 1 cut(s) 341
Bsp1720I GCTNAGC 1 cut(s) 72
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 1 cut(s) 90
BspANI GGCC 2 cut(s) 264, 395
BspCNI CTCAG 2 cut(s) 85, 415
BspLI GGNNCC 1 cut(s) 350
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 2 cut(s) 305, 530
BssECI CCNNGG 4 cut(s) 213, 396, 486, 504
BssMI GATC 1 cut(s) 341
BssT1I CCWWGG 4 cut(s) 213, 396, 486, 504
Bst2UI CCWGG 1 cut(s) 120
BstDEI CTNAG 4 cut(s) 72, 423, 516, 558
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 5 cut(s) 145, 266, 332, 412, 434
BstKTI GATC 1 cut(s) 344
BstMBI GATC 1 cut(s) 341
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 321
BstXI CCANNNNNNTGG 1 cut(s) 403
BsuRI GGCC 2 cut(s) 264, 395
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 5 cut(s) 145, 266, 332, 412, 434
BveI ACCTGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 172, 331
CspCI CAANNNNNGTGG 2 cut(s) 511, 546
CviAII CATG 4 cut(s) 397, 443, 459, 546
CviQI GTAC 2 cut(s) 172, 331
DdeI CTNAG 4 cut(s) 72, 423, 516, 558
DpnI GATC 1 cut(s) 343
DpnII GATC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 393
Eco130I CCWWGG 4 cut(s) 213, 396, 486, 504
Eco32I GATATC 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 118
EcoRV GATATC 1 cut(s) 541
EcoT14I CCWWGG 4 cut(s) 213, 396, 486, 504
ErhI CCWWGG 4 cut(s) 213, 396, 486, 504
FaeI CATG 4 cut(s) 400, 446, 462, 549
FaiI YATR 5 cut(s) 220, 398, 444, 460, 547
FaqI GGGAC 1 cut(s) 447
FatI CATG 4 cut(s) 396, 442, 458, 545
FokI GGATG 5 cut(s) 152, 253, 339, 419, 441
FspBI CTAG 1 cut(s) 32
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 2 cut(s) 264, 395
Hin1II CATG 4 cut(s) 400, 446, 462, 549
HinfI GANTC 3 cut(s) 96, 143, 416
HphI GGTGA 2 cut(s) 183, 263
Hpy188I TCNGA 4 cut(s) 101, 148, 271, 365
Hpy188III TCNNGA 1 cut(s) 496
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 314, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 4 cut(s) 72, 423, 516, 558
Hsp92II CATG 4 cut(s) 400, 446, 462, 549
Kzo9I GATC 1 cut(s) 341
LweI GCATC 2 cut(s) 424, 469
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 5 cut(s) 128, 206, 251, 275, 413
MalI GATC 1 cut(s) 343
MboI GATC 1 cut(s) 341
MboII GAAGA 1 cut(s) 105
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 2 cut(s) 51, 366
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 2 cut(s) 137, 410
MnlI CCTC 9 cut(s) 95, 126, 233, 235, 251, 254, 418, 465, 493
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 2 cut(s) 354, 369
MslI CAYNNNNRTG 2 cut(s) 271, 401
Msp20I TGGCCA 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 488
NcoI CCATGG 1 cut(s) 396
NdeII GATC 1 cut(s) 341
NlaIII CATG 4 cut(s) 400, 446, 462, 549
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 3 cut(s) 251, 275, 413
PaqCI CACCTGC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 118
PleI GAGTC 2 cut(s) 137, 410
PpsI GAGTC 2 cut(s) 137, 410
PshBI ATTAAT 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 2 cut(s) 173, 332
RsaNI GTAC 2 cut(s) 172, 331
RseI CAYNNNNRTG 2 cut(s) 271, 401
SaqAI TTAA 2 cut(s) 354, 369
Sau3AI GATC 1 cut(s) 341
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 2 cut(s) 137, 410
ScrFI CCNGG 1 cut(s) 120
SetI ASST 7 cut(s) 73, 163, 182, 225, 239, 250, 350
SfaNI GCATC 2 cut(s) 424, 469
SfcI CTRYAG 1 cut(s) 321
SmiMI CAYNNNNRTG 2 cut(s) 271, 401
Sse9I AATT 2 cut(s) 51, 366
SsiI CCGC 1 cut(s) 90
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 4 cut(s) 213, 396, 486, 504
TaqI TCGA 1 cut(s) 552
TasI AATT 2 cut(s) 51, 366
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 2 cut(s) 354, 369
Tru9I TTAA 2 cut(s) 354, 369
TseFI GTSAC 3 cut(s) 251, 275, 413
Tsp45I GTSAC 3 cut(s) 251, 275, 413
TspGWI ACGGA 1 cut(s) 270
Van91I CCANNNNNTGG 1 cut(s) 203
VspI ATTAAT 1 cut(s) 369
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.