Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005542

Physical Location & Seq

Genomic Coordinates Reverse (-)

27076044 .. 27081162

Gene Structure 5119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG143300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCAATTAAAAGTTGATAGAATATTGATGGATGATTGTCGGCTAGGAAAAAAGAAAGGGTTAAATGTCCAAGTTAAAAAGAAAAGTGATATCTTTGTCGCCAAAACCCTAGCTCTCTCTCCATTCAAAGCCAAGAAGAAGGGGAAAACCCAAGATTTGCGTCTCTTCTTTCTACTTTTTTCGGGTTTCAAGTCTGAGATGCAGTATCATAGCCCAGAAGAAATGGAAATTGGAAATTTAACACAAAGTGTGCCAAGAAGTCTAGGCTTGTTAAAATATGTAGCTCAAAGGAAAGAGCTTGAGAGGATAGAAGCCAAGAGGAATGAACTTACGAAATTGTATCATCAGACAGAAGCAAAGCTTTTGGCTAAAAGCTTAGACCTCAAGATCAGTGAAGGAAAGCTCTTGGCTAAAACTGAAGACCTCAAGAAGAGTGAAGCAAATCTCTTGGCTAAAACCCAAGAGCTCAAGAAGAGTGTAGCAGAGAACTTGGCTAAAAACGAAGAGCTCATGATCAGTGAAGCTCAGAAGGAGGAGCTTTCAAATATGCTTCGGCAAAGTGAAAGTCGAAACAAACAACTTGAGAAAGTTCTTGAGCAGATTGGGGATGAAGTGGAAGATCTGAAGAGAGCACATGCACACTGTGAACAAGTCAAAAAGTTTGAGCTTGAGCAGACTAGAGCTGTAAGGAAAGATCTTGAGGAAAAGCTTACACAAAGTGAAGCTCAAGTGGAAGATCTTAAGGAGGCACTTGGCAAGAGTGAAGCCGAGAAAATAGAGATGAAGGAGAGGGTTATTTTAGAGCAAAAGAAAGCTGATGAATTAGTGGCATGGTTAGCAGAAGCGCGCAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

32.82

Weight (kDa)

9.07

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06620 FvH4_7g06640 FvH4_7g06640
malus_domestica	MD02G1237600.v1.1
prunus_persica	Prupe.2G094400_v2.0.a1
pyrus_communis	pycom02g20830
rosa_chinensis	RchiOBHm_Chr1g0335321
rosa_laevigata	RLG00000029379 RLG00000029388
rosa_multiflora	Rmu_sc0001268.1_g000007 Rmu_sc0001790.1_g000013 Rmu_sc0003404.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315990 Rroxscaffold_4G00316030
rosa_rugosa	Rorug01G0122000 Rorug01G0122100 Rorug01G0122600 Rorug01G0122700 Rorug01G0122800
rosa_samantha	Rh1AG143300 Rh1AG143600 Rh1BG112200 Rh1BG112600 Rh1CG134900 Rh1CG135200 Rh1DG148900 Rh1DG149300
rosa_wichuraiana	Rw0G009190 Rw0G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	847
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	2 cut(s)	438, 644
AdeI	CACNNNGTG	3 cut(s)	248, 644, 719
AflII	CTTAAG	1 cut(s)	740
AgsI	TTSAA	3 cut(s)	127, 190, 543
AjuI	GAANNNNNNNTTGG	2 cut(s)	213, 245
Alw21I	GWGCWC	3 cut(s)	468, 510, 634
Alw26I	GTCTC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	235
ArsI	GACNNNNNNTTYG	2 cut(s)	550, 582
AspLEI	GCGC	2 cut(s)	847, 849
BanII	GRGCYC	2 cut(s)	468, 510
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	3 cut(s)	468, 510, 634
BccI	CCATC	1 cut(s)	22
BclI	TGATCA	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	4 cut(s)	44, 110, 263, 678
BfrI	CTTAAG	1 cut(s)	740
BglII	AGATCT	3 cut(s)	619, 694, 736
BmsI	GCATC	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	426
BpuEI	CTTGAG	9 cut(s)	320, 368, 410, 452, 602, 614, 689, 711, 719
BseGI	GGATG	2 cut(s)	37, 613
BseMII	CTCAG	2 cut(s)	186, 539
BsePI	GCGCGC	1 cut(s)	845
BseRI	GAGGAG	1 cut(s)	548
Bsh1236I	CGCG	1 cut(s)	847
BsiHKAI	GWGCWC	3 cut(s)	468, 510, 634
BsmAI	GTCTC	1 cut(s)	167
BsmBI	CGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	3 cut(s)	468, 510, 634
Bsp143I	GATC	5 cut(s)	387, 513, 619, 694, 736
BspCNI	CTCAG	2 cut(s)	187, 538
BspFNI	CGCG	1 cut(s)	847
BspHI	TCATGA	1 cut(s)	510
BspQI	GCTCTTC	1 cut(s)	498
BspTI	CTTAAG	1 cut(s)	740
BssHII	GCGCGC	1 cut(s)	845
BssMI	GATC	5 cut(s)	387, 513, 619, 694, 736
Bst4CI	ACNGT	1 cut(s)	644
Bst6I	CTCTTC	5 cut(s)	170, 425, 467, 498, 620
BstAFI	CTTAAG	1 cut(s)	740
BstC8I	GCNNGC	1 cut(s)	847
BstDEI	CTNAG	3 cut(s)	195, 376, 525
BstF5I	GGATG	2 cut(s)	37, 613
BstFNI	CGCG	1 cut(s)	847
BstHHI	GCGC	2 cut(s)	847, 849
BstKTI	GATC	5 cut(s)	390, 516, 622, 697, 739
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	5 cut(s)	387, 513, 619, 694, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	836
BstNSI	RCATGY	1 cut(s)	638
BstUI	CGCG	1 cut(s)	847
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	3 cut(s)	619, 694, 736
BstYI	RGATCY	3 cut(s)	619, 694, 736
BtsCI	GGATG	2 cut(s)	37, 613
BtsIMutI	CAGTG	3 cut(s)	397, 523, 640
Cac8I	GCNNGC	1 cut(s)	847
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	2 cut(s)	847, 849
CseI	GACGC	1 cut(s)	149
CviAII	CATG	3 cut(s)	511, 635, 831
DdeI	CTNAG	3 cut(s)	195, 376, 525
DpnI	GATC	5 cut(s)	389, 515, 621, 696, 738
DpnII	GATC	5 cut(s)	387, 513, 619, 694, 736
DraIII	CACNNNGTG	3 cut(s)	248, 644, 719
Eam1104I	CTCTTC	5 cut(s)	170, 425, 467, 498, 620
EarI	CTCTTC	5 cut(s)	170, 425, 467, 498, 620
Ecl136II	GAGCTC	2 cut(s)	466, 508
Eco24I	GRGCYC	2 cut(s)	468, 510
Eco32I	GATATC	1 cut(s)	91
Eco53kI	GAGCTC	2 cut(s)	466, 508
Eco57I	CTGAAG	2 cut(s)	438, 644
EcoICRI	GAGCTC	2 cut(s)	466, 508
EcoRV	GATATC	1 cut(s)	91
EcoT38I	GRGCYC	2 cut(s)	468, 510
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	3 cut(s)	514, 638, 834
FaiI	YATR	6 cut(s)	210, 279, 512, 548, 636, 832
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FatI	CATG	3 cut(s)	510, 634, 830
FbaI	TGATCA	1 cut(s)	513
FokI	GGATG	2 cut(s)	44, 620
FriOI	GRGCYC	2 cut(s)	468, 510
FspBI	CTAG	4 cut(s)	44, 110, 263, 678
GlaI	GCGC	2 cut(s)	846, 848
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	2 cut(s)	847, 849
Hin1II	CATG	3 cut(s)	514, 638, 834
Hin6I	GCGC	2 cut(s)	845, 847
HinP1I	GCGC	2 cut(s)	845, 847
HindIII	AAGCTT	3 cut(s)	359, 373, 707
Hpy166II	GTNNAC	1 cut(s)	647
Hpy188I	TCNGA	4 cut(s)	196, 348, 528, 624
Hpy188III	TCNNGA	6 cut(s)	385, 427, 469, 511, 593, 698
Hpy8I	GTNNAC	1 cut(s)	647
HpyAV	CCTTC	4 cut(s)	133, 389, 523, 778
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4V	TGCA	3 cut(s)	4, 202, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	836
HpyF3I	CTNAG	3 cut(s)	195, 376, 525
Hsp92II	CATG	3 cut(s)	514, 638, 834
HspAI	GCGC	2 cut(s)	845, 847
Ksp22I	TGATCA	1 cut(s)	513
Kzo9I	GATC	5 cut(s)	387, 513, 619, 694, 736
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	1 cut(s)	535
LpnPI	CCDG	1 cut(s)	228
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	4 cut(s)	44, 110, 263, 678
MalI	GATC	5 cut(s)	389, 515, 621, 696, 738
MboI	GATC	5 cut(s)	387, 513, 619, 694, 736
MflI	RGATCY	3 cut(s)	619, 694, 736
MhlI	GDGCHC	3 cut(s)	468, 510, 634
MluCI	AATT	5 cut(s)	5, 228, 235, 335, 821
MnlI	CCTC	8 cut(s)	297, 312, 392, 434, 526, 694, 739, 783
MseI	TTAA	6 cut(s)	8, 62, 75, 239, 272, 741
MspCI	CTTAAG	1 cut(s)	740
MvnI	CGCG	1 cut(s)	847
MwoI	GCNNNNNNNGC	1 cut(s)	836
NdeII	GATC	5 cut(s)	387, 513, 619, 694, 736
NlaIII	CATG	3 cut(s)	514, 638, 834
NmeAIII	GCCGAG	1 cut(s)	793
NspI	RCATGY	1 cut(s)	638
PagI	TCATGA	1 cut(s)	510
PauI	GCGCGC	1 cut(s)	845
PciSI	GCTCTTC	1 cut(s)	498
Psp124BI	GAGCTC	2 cut(s)	468, 510
PsuI	RGATCY	3 cut(s)	619, 694, 736
PteI	GCGCGC	1 cut(s)	845
SacI	GAGCTC	2 cut(s)	468, 510
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	6 cut(s)	8, 62, 75, 239, 272, 741
Sau3AI	GATC	5 cut(s)	387, 513, 619, 694, 736
SduI	GDGCHC	3 cut(s)	468, 510, 634
SfaNI	GCATC	1 cut(s)	189
Sse9I	AATT	5 cut(s)	5, 228, 235, 335, 821
SspI	AATATT	1 cut(s)	24
SspMI	CTAG	4 cut(s)	44, 110, 263, 678
SstI	GAGCTC	2 cut(s)	468, 510
TaaI	ACNGT	1 cut(s)	644
TaqI	TCGA	1 cut(s)	568
TasI	AATT	5 cut(s)	5, 228, 235, 335, 821
Tru1I	TTAA	6 cut(s)	8, 62, 75, 239, 272, 741
Tru9I	TTAA	6 cut(s)	8, 62, 75, 239, 272, 741
TscAI	CASTG	3 cut(s)	397, 523, 647
TspDTI	ATGAA	4 cut(s)	339, 624, 797, 834
TspRI	CASTG	3 cut(s)	397, 523, 647
Vha464I	CTTAAG	1 cut(s)	740
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	1 cut(s)	638
XspI	CTAG	4 cut(s)	44, 110, 263, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.