Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005542

Physical Location & Seq

Genomic Coordinates Reverse (-)

29578672 .. 29581366

Gene Structure 2695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG134900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAAGGTTCGTCGGCTAGGAAAAAAGAAAGGGTTAAATGTCCAAGTTAAAAAGAAAAGTGATATCTTTGTCGCCAAAACCCTAGCTCTCTCTCCATTCAAAGCCAAGAAGAAGGGGAAAACCCAAGATTTGCGTCTCTTCTTTCTACTTTTTTCGGGTTTCAAGTCTGAGATGCAGTATCATAGCCCAGAAGAAATGGAAATTGGAAATTTAACACAAAGTGTGCCAAGAAGTCTAGGCTTGTTAAAATATGTAGCTCAAAGGAAAGAGCTTGAGAGGATAGAAGCCAAGAGGAATGAACTTACGAAATTGTATCATCAGACAGAAGCAAAGCTTTTGGCTAAAAGCTTAGACCTCAAGATCAGTGAAGGAAAGCTCTTGGCTAAAACTGAAGACCTCAAGAAGAGTGAAGCAAATCTCTTGGCTAAAACCCAAGAGCTCAAGAAGAGTGTAGCAGAGAACTTGGCTAAAAACGAAGAGCTCATGATCAGTGAAGCTCAGAAGGAGGAGCTTTCAAATATGCTTCGGCAAAGTGAAAGTCGAAACAAACAACTTGAGAAAGTTCTTGAGCAGATTGGGGATGAAGTGGAAGATCTGAAGAGAGCACATGCACACTGTGAACAAGTCAAAAAGTTTGAGCTTGAGCAGACTAGAGCTGTAAGGAAAGATCTTGAGGAAAAGCTTACACAAAGTGAAGCTCAAGTGGAAGATCTTAAGGAGGCACTTGGCAAGAGTGAAGCCGAGAAAATAGAGATGAAGGAGAGGGTTATTTTAGAGCAAAAGAAAGCTGATGAATTAGTGGCATGGTTAGCAGAAGCGCGCAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

31.77

Weight (kDa)

9.33

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06620 FvH4_7g06640 FvH4_7g06640
malus_domestica	MD02G1237600.v1.1
prunus_persica	Prupe.2G094400_v2.0.a1
pyrus_communis	pycom02g20830
rosa_chinensis	RchiOBHm_Chr1g0335321
rosa_laevigata	RLG00000029379 RLG00000029388
rosa_multiflora	Rmu_sc0001268.1_g000007 Rmu_sc0001790.1_g000013 Rmu_sc0003404.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315990 Rroxscaffold_4G00316030
rosa_rugosa	Rorug01G0122000 Rorug01G0122100 Rorug01G0122600 Rorug01G0122700 Rorug01G0122800
rosa_samantha	Rh1AG143300 Rh1AG143600 Rh1BG112200 Rh1BG112600 Rh1CG134900 Rh1CG135200 Rh1DG148900 Rh1DG149300
rosa_wichuraiana	Rw0G009190 Rw0G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	820
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	2 cut(s)	411, 617
AdeI	CACNNNGTG	3 cut(s)	221, 617, 692
AflII	CTTAAG	1 cut(s)	713
AgsI	TTSAA	3 cut(s)	100, 163, 516
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
Alw21I	GWGCWC	3 cut(s)	441, 483, 607
Alw26I	GTCTC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	208
ArsI	GACNNNNNNTTYG	2 cut(s)	523, 555
AspLEI	GCGC	2 cut(s)	820, 822
BanII	GRGCYC	2 cut(s)	441, 483
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	3 cut(s)	441, 483, 607
BclI	TGATCA	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	4 cut(s)	17, 83, 236, 651
BfrI	CTTAAG	1 cut(s)	713
BglII	AGATCT	3 cut(s)	592, 667, 709
BmsI	GCATC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	399
BpuEI	CTTGAG	9 cut(s)	293, 341, 383, 425, 575, 587, 662, 684, 692
BseGI	GGATG	1 cut(s)	586
BseMII	CTCAG	2 cut(s)	159, 512
BsePI	GCGCGC	1 cut(s)	818
BseRI	GAGGAG	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	820
BsiHKAI	GWGCWC	3 cut(s)	441, 483, 607
BsmAI	GTCTC	1 cut(s)	140
BsmBI	CGTCTC	1 cut(s)	140
Bsp1286I	GDGCHC	3 cut(s)	441, 483, 607
Bsp143I	GATC	5 cut(s)	360, 486, 592, 667, 709
BspCNI	CTCAG	2 cut(s)	160, 511
BspFNI	CGCG	1 cut(s)	820
BspHI	TCATGA	1 cut(s)	483
BspQI	GCTCTTC	1 cut(s)	471
BspTI	CTTAAG	1 cut(s)	713
BssHII	GCGCGC	1 cut(s)	818
BssMI	GATC	5 cut(s)	360, 486, 592, 667, 709
Bst4CI	ACNGT	1 cut(s)	617
Bst6I	CTCTTC	5 cut(s)	143, 398, 440, 471, 593
BstAFI	CTTAAG	1 cut(s)	713
BstC8I	GCNNGC	1 cut(s)	820
BstDEI	CTNAG	3 cut(s)	168, 349, 498
BstF5I	GGATG	1 cut(s)	586
BstFNI	CGCG	1 cut(s)	820
BstHHI	GCGC	2 cut(s)	820, 822
BstKTI	GATC	5 cut(s)	363, 489, 595, 670, 712
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	5 cut(s)	360, 486, 592, 667, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	809
BstNSI	RCATGY	1 cut(s)	611
BstUI	CGCG	1 cut(s)	820
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	3 cut(s)	592, 667, 709
BstYI	RGATCY	3 cut(s)	592, 667, 709
BtsCI	GGATG	1 cut(s)	586
BtsIMutI	CAGTG	3 cut(s)	370, 496, 613
Cac8I	GCNNGC	1 cut(s)	820
CciI	TCATGA	1 cut(s)	483
CfoI	GCGC	2 cut(s)	820, 822
CseI	GACGC	1 cut(s)	122
CviAII	CATG	3 cut(s)	484, 608, 804
DdeI	CTNAG	3 cut(s)	168, 349, 498
DpnI	GATC	5 cut(s)	362, 488, 594, 669, 711
DpnII	GATC	5 cut(s)	360, 486, 592, 667, 709
DraIII	CACNNNGTG	3 cut(s)	221, 617, 692
Eam1104I	CTCTTC	5 cut(s)	143, 398, 440, 471, 593
EarI	CTCTTC	5 cut(s)	143, 398, 440, 471, 593
Ecl136II	GAGCTC	2 cut(s)	439, 481
Eco24I	GRGCYC	2 cut(s)	441, 483
Eco32I	GATATC	1 cut(s)	64
Eco53kI	GAGCTC	2 cut(s)	439, 481
Eco57I	CTGAAG	2 cut(s)	411, 617
EcoICRI	GAGCTC	2 cut(s)	439, 481
EcoRV	GATATC	1 cut(s)	64
EcoT38I	GRGCYC	2 cut(s)	441, 483
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	3 cut(s)	487, 611, 807
FaiI	YATR	6 cut(s)	183, 252, 485, 521, 609, 805
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FatI	CATG	3 cut(s)	483, 607, 803
FbaI	TGATCA	1 cut(s)	486
FokI	GGATG	1 cut(s)	593
FriOI	GRGCYC	2 cut(s)	441, 483
FspBI	CTAG	4 cut(s)	17, 83, 236, 651
GlaI	GCGC	2 cut(s)	819, 821
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	2 cut(s)	820, 822
Hin1II	CATG	3 cut(s)	487, 611, 807
Hin6I	GCGC	2 cut(s)	818, 820
HinP1I	GCGC	2 cut(s)	818, 820
HindIII	AAGCTT	3 cut(s)	332, 346, 680
Hpy166II	GTNNAC	1 cut(s)	620
Hpy188I	TCNGA	4 cut(s)	169, 321, 501, 597
Hpy188III	TCNNGA	6 cut(s)	358, 400, 442, 484, 566, 671
Hpy8I	GTNNAC	1 cut(s)	620
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	4 cut(s)	106, 362, 496, 751
HpyCH4III	ACNGT	1 cut(s)	617
HpyCH4V	TGCA	2 cut(s)	175, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	809
HpyF3I	CTNAG	3 cut(s)	168, 349, 498
Hsp92II	CATG	3 cut(s)	487, 611, 807
HspAI	GCGC	2 cut(s)	818, 820
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	5 cut(s)	360, 486, 592, 667, 709
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	1 cut(s)	508
LpnPI	CCDG	1 cut(s)	201
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	4 cut(s)	17, 83, 236, 651
MalI	GATC	5 cut(s)	362, 488, 594, 669, 711
MboI	GATC	5 cut(s)	360, 486, 592, 667, 709
MflI	RGATCY	3 cut(s)	592, 667, 709
MhlI	GDGCHC	3 cut(s)	441, 483, 607
MluCI	AATT	4 cut(s)	201, 208, 308, 794
MnlI	CCTC	8 cut(s)	270, 285, 365, 407, 499, 667, 712, 756
MseI	TTAA	5 cut(s)	35, 48, 212, 245, 714
MspCI	CTTAAG	1 cut(s)	713
MvnI	CGCG	1 cut(s)	820
MwoI	GCNNNNNNNGC	1 cut(s)	809
NdeII	GATC	5 cut(s)	360, 486, 592, 667, 709
NlaIII	CATG	3 cut(s)	487, 611, 807
NmeAIII	GCCGAG	1 cut(s)	766
NspI	RCATGY	1 cut(s)	611
PagI	TCATGA	1 cut(s)	483
PauI	GCGCGC	1 cut(s)	818
PciSI	GCTCTTC	1 cut(s)	471
Psp124BI	GAGCTC	2 cut(s)	441, 483
PsuI	RGATCY	3 cut(s)	592, 667, 709
PteI	GCGCGC	1 cut(s)	818
SacI	GAGCTC	2 cut(s)	441, 483
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	5 cut(s)	35, 48, 212, 245, 714
Sau3AI	GATC	5 cut(s)	360, 486, 592, 667, 709
SduI	GDGCHC	3 cut(s)	441, 483, 607
SfaNI	GCATC	1 cut(s)	162
Sse9I	AATT	4 cut(s)	201, 208, 308, 794
SspMI	CTAG	4 cut(s)	17, 83, 236, 651
SstI	GAGCTC	2 cut(s)	441, 483
TaaI	ACNGT	1 cut(s)	617
TaqI	TCGA	1 cut(s)	541
TasI	AATT	4 cut(s)	201, 208, 308, 794
Tru1I	TTAA	5 cut(s)	35, 48, 212, 245, 714
Tru9I	TTAA	5 cut(s)	35, 48, 212, 245, 714
TscAI	CASTG	3 cut(s)	370, 496, 620
TspDTI	ATGAA	5 cut(s)	17, 312, 597, 770, 807
TspRI	CASTG	3 cut(s)	370, 496, 620
Vha464I	CTTAAG	1 cut(s)	713
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	1 cut(s)	611
XspI	CTAG	4 cut(s)	17, 83, 236, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.