Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00361

Orthogroup ID

OG0005542

Physical Location & Seq

Genomic Coordinates Reverse (-)

4491 .. 5833

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G009190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAAACTGGAAATTTAACACAAAGTGTGCCAAGAAGTCTAGGCTTGTTAAAATATGTAGCTCAAAGGAAAGAGCTTGAGAGGATAGAAGCCAAGAGGAATGAACTTACGAAATTGTATCATCAGACTGAAGCAAAGCTTTTGGCTAAAAGCTTAGACCTCAAGATCAGTGAAGGAAAGCTCTTGGCTAAAACTGAAGACCTCAAGAAGAGTGAAGCAAATCTCCTGGCTAAAACCGAAGAGCTCAAGAAGAGTGTAGCTGAGAACTTGGCTAAAAACGAAGAGCTCATGATCAGTGAAGCTCAGAAGGAGGAGCTTTCAAATTTGCTTCGGCAAAGTGAAAGTCAAAACAAACAACTTAAGAAAGTTCTTGAGCAGATTGGGGATGAAGTGGAAAATCTGAAGAGAGCACATGCACACTGTGAACAAGTCAAAAAGTTTGAGCTTGAAGAGACTGGAGCTGTAAGGAAAGATCTTGAGGAAAAGCTTAGACAAAGTGAAGCTCAAGTGGAAGATCTTAAGGAGGCACTTGGCAAGAGTGGAGCCGAGAAAATAGAGATGAAGGAGAGGGTTATTTTAGAGCAAAAGAAAGCTGATGAATTAGTGGCATGGCTAGCAGAAGCGCGCAAGAAATGGGAGAGTGAAAAAGAAAAACTTCGCTGTATAAACACCGAACTAGCGAAGCAGCTTGAAGATGCCAAGATGAAAAGCATTGATGATGAGTTCGAAGTTGTTGACGATGAGTTTGATGTTAAACTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

29.23

Weight (kDa)

5.43

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06620 FvH4_7g06640 FvH4_7g06640
malus_domestica	MD02G1237600.v1.1
prunus_persica	Prupe.2G094400_v2.0.a1
pyrus_communis	pycom02g20830
rosa_chinensis	RchiOBHm_Chr1g0335321
rosa_laevigata	RLG00000029379 RLG00000029388
rosa_multiflora	Rmu_sc0001268.1_g000007 Rmu_sc0001790.1_g000013 Rmu_sc0003404.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315990 Rroxscaffold_4G00316030
rosa_rugosa	Rorug01G0122000 Rorug01G0122100 Rorug01G0122600 Rorug01G0122700 Rorug01G0122800
rosa_samantha	Rh1AG143300 Rh1AG143600 Rh1BG112200 Rh1BG112600 Rh1CG134900 Rh1CG135200 Rh1DG148900 Rh1DG149300
rosa_wichuraiana	Rw0G009190 Rw0G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	625
AcsI	RAATTY	2 cut(s)	13, 322
AcuI	CTGAAG	3 cut(s)	150, 216, 422
AdeI	CACNNNGTG	2 cut(s)	26, 422
AflII	CTTAAG	2 cut(s)	359, 518
AgsI	TTSAA	3 cut(s)	321, 449, 692
AjnI	CCWGG	1 cut(s)	225
Alw21I	GWGCWC	3 cut(s)	246, 288, 412
Alw26I	GTCTC	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	685
ApoI	RAATTY	2 cut(s)	13, 322
ArsI	GACNNNNNNTTYG	4 cut(s)	328, 360, 728, 760
Asp700I	GAANNNNTTC	1 cut(s)	654
AspLEI	GCGC	2 cut(s)	625, 627
AsuII	TTCGAA	1 cut(s)	726
AsuNHI	GCTAGC	1 cut(s)	613
BanII	GRGCYC	2 cut(s)	246, 288
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	3 cut(s)	246, 288, 412
BbvI	GCAGC	1 cut(s)	697
BciT130I	CCWGG	1 cut(s)	227
BclI	TGATCA	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	3 cut(s)	41, 614, 677
BfrI	CTTAAG	2 cut(s)	359, 518
BglII	AGATCT	2 cut(s)	472, 514
BisI	GCNGC	1 cut(s)	686
BlsI	GCNGC	1 cut(s)	687
Bme1390I	CCNGG	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	685
BmtI	GCTAGC	1 cut(s)	617
BpiI	GAAGAC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	726
BpuEI	CTTGAG	7 cut(s)	98, 146, 188, 230, 392, 489, 497
Bse1I	ACTGG	2 cut(s)	13, 460
BseBI	CCWGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	391
BseMII	CTCAG	2 cut(s)	252, 317
BseNI	ACTGG	2 cut(s)	13, 460
BsePI	GCGCGC	1 cut(s)	623
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	697
Bsh1236I	CGCG	1 cut(s)	625
BsiHKAI	GWGCWC	3 cut(s)	246, 288, 412
BsmAI	GTCTC	1 cut(s)	446
Bsp119I	TTCGAA	1 cut(s)	726
Bsp1286I	GDGCHC	3 cut(s)	246, 288, 412
Bsp143I	GATC	4 cut(s)	165, 291, 472, 514
BspCNI	CTCAG	2 cut(s)	253, 316
BspFNI	CGCG	1 cut(s)	625
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	544
BspOI	GCTAGC	1 cut(s)	617
BspQI	GCTCTTC	2 cut(s)	234, 276
BspT104I	TTCGAA	1 cut(s)	726
BspTI	CTTAAG	2 cut(s)	359, 518
BsrI	ACTGG	2 cut(s)	13, 460
BssHII	GCGCGC	1 cut(s)	623
BssMI	GATC	4 cut(s)	165, 291, 472, 514
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	6 cut(s)	203, 234, 245, 276, 398, 444
BstAFI	CTTAAG	2 cut(s)	359, 518
BstBI	TTCGAA	1 cut(s)	726
BstC8I	GCNNGC	2 cut(s)	615, 625
BstDEI	CTNAG	4 cut(s)	154, 261, 303, 488
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	625
BstHHI	GCGC	2 cut(s)	625, 627
BstKTI	GATC	4 cut(s)	168, 294, 475, 517
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	4 cut(s)	165, 291, 472, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	614
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	225
BstUI	CGCG	1 cut(s)	625
BstV1I	GCAGC	1 cut(s)	697
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	2 cut(s)	472, 514
BstYI	RGATCY	2 cut(s)	472, 514
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	3 cut(s)	175, 301, 418
Cac8I	GCNNGC	2 cut(s)	615, 625
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	2 cut(s)	625, 627
CviAII	CATG	3 cut(s)	289, 413, 609
DdeI	CTNAG	4 cut(s)	154, 261, 303, 488
DpnI	GATC	4 cut(s)	167, 293, 474, 516
DpnII	GATC	4 cut(s)	165, 291, 472, 514
DraIII	CACNNNGTG	2 cut(s)	26, 422
Eam1104I	CTCTTC	6 cut(s)	203, 234, 245, 276, 398, 444
EarI	CTCTTC	6 cut(s)	203, 234, 245, 276, 398, 444
Ecl136II	GAGCTC	2 cut(s)	244, 286
Eco24I	GRGCYC	2 cut(s)	246, 288
Eco53kI	GAGCTC	2 cut(s)	244, 286
Eco57I	CTGAAG	3 cut(s)	150, 216, 422
EcoICRI	GAGCTC	2 cut(s)	244, 286
EcoRII	CCWGG	1 cut(s)	225
EcoT38I	GRGCYC	2 cut(s)	246, 288
FaeI	CATG	3 cut(s)	292, 416, 612
FaiI	YATR	5 cut(s)	57, 290, 414, 610, 665
FalI	AAGNNNNNCTT	4 cut(s)	123, 155, 639, 671
FatI	CATG	3 cut(s)	288, 412, 608
FbaI	TGATCA	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	686
FokI	GGATG	1 cut(s)	398
FriOI	GRGCYC	2 cut(s)	246, 288
Fsp4HI	GCNGC	1 cut(s)	686
FspBI	CTAG	3 cut(s)	41, 614, 677
GlaI	GCGC	2 cut(s)	624, 626
GluI	GCNGC	1 cut(s)	686
GsuI	CTGGAG	1 cut(s)	477
HhaI	GCGC	2 cut(s)	625, 627
Hin1II	CATG	3 cut(s)	292, 416, 612
Hin6I	GCGC	2 cut(s)	623, 625
HinP1I	GCGC	2 cut(s)	623, 625
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	3 cut(s)	137, 151, 485
Hpy166II	GTNNAC	2 cut(s)	425, 736
Hpy188I	TCNGA	3 cut(s)	126, 306, 402
Hpy188III	TCNNGA	6 cut(s)	163, 205, 247, 289, 371, 476
Hpy8I	GTNNAC	2 cut(s)	425, 736
HpyAV	CCTTC	3 cut(s)	167, 301, 556
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4V	TGCA	1 cut(s)	416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	614
HpyF3I	CTNAG	4 cut(s)	154, 261, 303, 488
Hsp92II	CATG	3 cut(s)	292, 416, 612
HspAI	GCGC	2 cut(s)	623, 625
Ksp22I	TGATCA	1 cut(s)	291
Kzo9I	GATC	4 cut(s)	165, 291, 472, 514
LguI	GCTCTTC	2 cut(s)	234, 276
LmnI	GCTCC	3 cut(s)	313, 458, 542
LpnPI	CCDG	3 cut(s)	212, 239, 441
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	1 cut(s)	685
MaeI	CTAG	3 cut(s)	41, 614, 677
MalI	GATC	4 cut(s)	167, 293, 474, 516
MboI	GATC	4 cut(s)	165, 291, 472, 514
MboII	GAAGA	9 cut(s)	209, 220, 251, 262, 293, 415, 461, 524, 704
MflI	RGATCY	2 cut(s)	472, 514
MhlI	GDGCHC	3 cut(s)	246, 288, 412
MluCI	AATT	4 cut(s)	13, 113, 322, 599
MnlI	CCTC	8 cut(s)	75, 90, 170, 212, 304, 472, 517, 561
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	6 cut(s)	17, 50, 360, 519, 753, 763
MspCI	CTTAAG	2 cut(s)	359, 518
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	625
MwoI	GCNNNNNNNGC	1 cut(s)	614
NdeII	GATC	4 cut(s)	165, 291, 472, 514
NheI	GCTAGC	1 cut(s)	613
NlaIII	CATG	3 cut(s)	292, 416, 612
NlaIV	GGNNCC	1 cut(s)	544
NmeAIII	GCCGAG	1 cut(s)	571
NspI	RCATGY	1 cut(s)	416
NspV	TTCGAA	1 cut(s)	726
PagI	TCATGA	1 cut(s)	288
PauI	GCGCGC	1 cut(s)	623
PciSI	GCTCTTC	2 cut(s)	234, 276
PdmI	GAANNNNTTC	1 cut(s)	654
PkrI	GCNGC	1 cut(s)	687
Psp124BI	GAGCTC	2 cut(s)	246, 288
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	544
PsuI	RGATCY	2 cut(s)	472, 514
PteI	GCGCGC	1 cut(s)	623
SacI	GAGCTC	2 cut(s)	246, 288
SapI	GCTCTTC	2 cut(s)	234, 276
SaqAI	TTAA	6 cut(s)	17, 50, 360, 519, 753, 763
SatI	GCNGC	1 cut(s)	686
Sau3AI	GATC	4 cut(s)	165, 291, 472, 514
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	3 cut(s)	246, 288, 412
SfaNI	GCATC	1 cut(s)	685
SfuI	TTCGAA	1 cut(s)	726
SmlI	CTYRAG	9 cut(s)	77, 161, 203, 245, 359, 371, 476, 504, 518
SmoI	CTYRAG	9 cut(s)	77, 161, 203, 245, 359, 371, 476, 504, 518
Sse9I	AATT	4 cut(s)	13, 113, 322, 599
SspMI	CTAG	3 cut(s)	41, 614, 677
SstI	GAGCTC	2 cut(s)	246, 288
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	422
TaqI	TCGA	1 cut(s)	726
TasI	AATT	4 cut(s)	13, 113, 322, 599
Tru1I	TTAA	6 cut(s)	17, 50, 360, 519, 753, 763
Tru9I	TTAA	6 cut(s)	17, 50, 360, 519, 753, 763
TscAI	CASTG	3 cut(s)	175, 301, 425
TseI	GCWGC	1 cut(s)	685
TspDTI	ATGAA	5 cut(s)	117, 402, 575, 612, 719
TspRI	CASTG	3 cut(s)	175, 301, 425
Vha464I	CTTAAG	2 cut(s)	359, 518
XapI	RAATTY	2 cut(s)	13, 322
XceI	RCATGY	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	3 cut(s)	41, 614, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.