Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005542

Physical Location & Seq

Genomic Coordinates Reverse (-)

31075303 .. 31076652

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG148900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAAATTGGAAATTTAACACAAAGTGTGCCAAGAAGTCTAGGCTTGTTAAAATATGTAGCTCAAAGGAAAGAGCTTGAGAGGATAGAAGCCAAGAGGAATGAACTTACGAAATTGTACCATCAGACTGAAGCAAAGCTTTTGGCTAAAAGCTTAGACCTCAAGATCAGTGAAGGAAAGCTCTTGGCTAAAACTGAAGACCTCAAGAAGAGTGAAGCAAATCTCTTGGCTAAAACCGAAGAGCTCAAGAAGAGTGTAGCAGAGAACTTGGCTAAAAACGAAGAGCTCATGATCAGTGAAGCTCAGAAGGAGGAGCTTTCAAATTTGCTTCGGCAAAGTGAAAGTCGAAACAAACAACTTGAGAAAGTTCTTGAGCAGATCATTGGGGATGAAGTGGAAGATCTGAAGAGAGCACATGCACACTGTGAACAAGTCAAAAAGTTTGAGCTTGAGCAGACTAGAGCTGTAAGGAAAGATCTTGAGGAAAAGCTTACACAAAGTGAAGCTCAAGTGGAAGATCTTAAGGAGGCACTTGGCAAGAGTGAAGCCGAGAAAATAGAGATGAAGGAGAGGGTTATTTTAGAGCAAAAGAAAGCTGATGAATTAGTGGCATGGTTAGCAGAAGCGCGCAAGAAATGGGAGAGTGAAAAAGAAAGACTTCGCTGTATAAACACCGAACTAGCGAAGCAGCTTGAAGATGCCAAGATGAAAAGCATTGATGATGAGTTCGAAGTTGTTGATGATGAGTTTGATGTTAAAGTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

29.51

Weight (kDa)

5.28

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06620 FvH4_7g06640 FvH4_7g06640
malus_domestica	MD02G1237600.v1.1
prunus_persica	Prupe.2G094400_v2.0.a1
pyrus_communis	pycom02g20830
rosa_chinensis	RchiOBHm_Chr1g0335321
rosa_laevigata	RLG00000029379 RLG00000029388
rosa_multiflora	Rmu_sc0001268.1_g000007 Rmu_sc0001790.1_g000013 Rmu_sc0003404.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315990 Rroxscaffold_4G00316030
rosa_rugosa	Rorug01G0122000 Rorug01G0122100 Rorug01G0122600 Rorug01G0122700 Rorug01G0122800
rosa_samantha	Rh1AG143300 Rh1AG143600 Rh1BG112200 Rh1BG112600 Rh1CG134900 Rh1CG135200 Rh1DG148900 Rh1DG149300
rosa_wichuraiana	Rw0G009190 Rw0G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	628
AcsI	RAATTY	2 cut(s)	13, 322
AcuI	CTGAAG	3 cut(s)	150, 216, 425
AdeI	CACNNNGTG	3 cut(s)	26, 425, 500
AfaI	GTAC	1 cut(s)	119
AflII	CTTAAG	1 cut(s)	521
AgsI	TTSAA	2 cut(s)	321, 695
Alw21I	GWGCWC	3 cut(s)	246, 288, 415
ApeKI	GCWGC	1 cut(s)	688
ApoI	RAATTY	2 cut(s)	13, 322
ArsI	GACNNNNNNTTYG	2 cut(s)	328, 360
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	2 cut(s)	628, 630
AsuII	TTCGAA	1 cut(s)	729
BanII	GRGCYC	2 cut(s)	246, 288
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	3 cut(s)	246, 288, 415
BbvI	GCAGC	1 cut(s)	700
BccI	CCATC	1 cut(s)	129
BclI	TGATCA	1 cut(s)	291
BfaI	CTAG	3 cut(s)	41, 459, 680
BfrI	CTTAAG	1 cut(s)	521
BglII	AGATCT	3 cut(s)	400, 475, 517
BisI	GCNGC	1 cut(s)	689
BlsI	GCNGC	1 cut(s)	690
BmsI	GCATC	1 cut(s)	688
BpiI	GAAGAC	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	729
BpuEI	CTTGAG	9 cut(s)	98, 146, 188, 230, 380, 392, 470, 492, 500
BseGI	GGATG	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	317
BsePI	GCGCGC	1 cut(s)	626
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	700
Bsh1236I	CGCG	1 cut(s)	628
BsiHKAI	GWGCWC	3 cut(s)	246, 288, 415
Bsp119I	TTCGAA	1 cut(s)	729
Bsp1286I	GDGCHC	3 cut(s)	246, 288, 415
Bsp143I	GATC	6 cut(s)	165, 291, 378, 400, 475, 517
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	628
BspHI	TCATGA	1 cut(s)	288
BspQI	GCTCTTC	2 cut(s)	234, 276
BspT104I	TTCGAA	1 cut(s)	729
BspTI	CTTAAG	1 cut(s)	521
BssHII	GCGCGC	1 cut(s)	626
BssMI	GATC	6 cut(s)	165, 291, 378, 400, 475, 517
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	5 cut(s)	203, 234, 245, 276, 401
BstAFI	CTTAAG	1 cut(s)	521
BstBI	TTCGAA	1 cut(s)	729
BstC8I	GCNNGC	1 cut(s)	628
BstDEI	CTNAG	2 cut(s)	154, 303
BstF5I	GGATG	1 cut(s)	394
BstFNI	CGCG	1 cut(s)	628
BstHHI	GCGC	2 cut(s)	628, 630
BstKTI	GATC	6 cut(s)	168, 294, 381, 403, 478, 520
BstMBI	GATC	6 cut(s)	165, 291, 378, 400, 475, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNSI	RCATGY	1 cut(s)	419
BstUI	CGCG	1 cut(s)	628
BstV1I	GCAGC	1 cut(s)	700
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	3 cut(s)	400, 475, 517
BstYI	RGATCY	3 cut(s)	400, 475, 517
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	3 cut(s)	175, 301, 421
Cac8I	GCNNGC	1 cut(s)	628
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	2 cut(s)	628, 630
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	3 cut(s)	289, 416, 612
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	2 cut(s)	154, 303
DpnI	GATC	6 cut(s)	167, 293, 380, 402, 477, 519
DpnII	GATC	6 cut(s)	165, 291, 378, 400, 475, 517
DraIII	CACNNNGTG	3 cut(s)	26, 425, 500
Eam1104I	CTCTTC	5 cut(s)	203, 234, 245, 276, 401
EarI	CTCTTC	5 cut(s)	203, 234, 245, 276, 401
Ecl136II	GAGCTC	2 cut(s)	244, 286
Eco24I	GRGCYC	2 cut(s)	246, 288
Eco53kI	GAGCTC	2 cut(s)	244, 286
Eco57I	CTGAAG	3 cut(s)	150, 216, 425
EcoICRI	GAGCTC	2 cut(s)	244, 286
EcoT38I	GRGCYC	2 cut(s)	246, 288
FaeI	CATG	3 cut(s)	292, 419, 615
FaiI	YATR	5 cut(s)	57, 290, 417, 613, 668
FalI	AAGNNNNNCTT	4 cut(s)	123, 155, 642, 674
FatI	CATG	3 cut(s)	288, 415, 611
FbaI	TGATCA	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	689
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	2 cut(s)	246, 288
Fsp4HI	GCNGC	1 cut(s)	689
FspBI	CTAG	3 cut(s)	41, 459, 680
GlaI	GCGC	2 cut(s)	627, 629
GluI	GCNGC	1 cut(s)	689
HhaI	GCGC	2 cut(s)	628, 630
Hin1II	CATG	3 cut(s)	292, 419, 615
Hin6I	GCGC	2 cut(s)	626, 628
HinP1I	GCGC	2 cut(s)	626, 628
HindIII	AAGCTT	3 cut(s)	137, 151, 488
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	3 cut(s)	126, 306, 405
Hpy188III	TCNNGA	6 cut(s)	163, 205, 247, 289, 371, 479
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	3 cut(s)	167, 301, 559
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	2 cut(s)	154, 303
Hsp92II	CATG	3 cut(s)	292, 419, 615
HspAI	GCGC	2 cut(s)	626, 628
Ksp22I	TGATCA	1 cut(s)	291
Kzo9I	GATC	6 cut(s)	165, 291, 378, 400, 475, 517
LguI	GCTCTTC	2 cut(s)	234, 276
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	1 cut(s)	700
LweI	GCATC	1 cut(s)	688
MaeI	CTAG	3 cut(s)	41, 459, 680
MalI	GATC	6 cut(s)	167, 293, 380, 402, 477, 519
MboI	GATC	6 cut(s)	165, 291, 378, 400, 475, 517
MboII	GAAGA	9 cut(s)	209, 220, 251, 262, 293, 410, 418, 527, 707
MflI	RGATCY	3 cut(s)	400, 475, 517
MhlI	GDGCHC	3 cut(s)	246, 288, 415
MluCI	AATT	5 cut(s)	6, 13, 113, 322, 602
MnlI	CCTC	8 cut(s)	75, 90, 170, 212, 304, 475, 520, 564
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	5 cut(s)	17, 50, 522, 756, 766
MspCI	CTTAAG	1 cut(s)	521
MvnI	CGCG	1 cut(s)	628
MwoI	GCNNNNNNNGC	1 cut(s)	617
NdeII	GATC	6 cut(s)	165, 291, 378, 400, 475, 517
NlaIII	CATG	3 cut(s)	292, 419, 615
NmeAIII	GCCGAG	1 cut(s)	574
NspI	RCATGY	1 cut(s)	419
NspV	TTCGAA	1 cut(s)	729
PagI	TCATGA	1 cut(s)	288
PauI	GCGCGC	1 cut(s)	626
PciSI	GCTCTTC	2 cut(s)	234, 276
PdmI	GAANNNNTTC	1 cut(s)	657
PkrI	GCNGC	1 cut(s)	690
Psp124BI	GAGCTC	2 cut(s)	246, 288
PsuI	RGATCY	3 cut(s)	400, 475, 517
PteI	GCGCGC	1 cut(s)	626
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SacI	GAGCTC	2 cut(s)	246, 288
SapI	GCTCTTC	2 cut(s)	234, 276
SaqAI	TTAA	5 cut(s)	17, 50, 522, 756, 766
SatI	GCNGC	1 cut(s)	689
Sau3AI	GATC	6 cut(s)	165, 291, 378, 400, 475, 517
SduI	GDGCHC	3 cut(s)	246, 288, 415
SfaNI	GCATC	1 cut(s)	688
SfuI	TTCGAA	1 cut(s)	729
Sse9I	AATT	5 cut(s)	6, 13, 113, 322, 602
SspMI	CTAG	3 cut(s)	41, 459, 680
SstI	GAGCTC	2 cut(s)	246, 288
TaaI	ACNGT	1 cut(s)	425
TaqI	TCGA	2 cut(s)	346, 729
TasI	AATT	5 cut(s)	6, 13, 113, 322, 602
Tru1I	TTAA	5 cut(s)	17, 50, 522, 756, 766
Tru9I	TTAA	5 cut(s)	17, 50, 522, 756, 766
TscAI	CASTG	3 cut(s)	175, 301, 428
TseI	GCWGC	1 cut(s)	688
TspDTI	ATGAA	5 cut(s)	117, 405, 578, 615, 722
TspRI	CASTG	3 cut(s)	175, 301, 428
Vha464I	CTTAAG	1 cut(s)	521
XapI	RAATTY	2 cut(s)	13, 322
XceI	RCATGY	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	3 cut(s)	41, 459, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.