No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g06620 FvH4_7g06640 FvH4_7g06640 |
| malus_domestica | MD02G1237600.v1.1 |
| prunus_persica | Prupe.2G094400_v2.0.a1 |
| pyrus_communis | pycom02g20830 |
| rosa_chinensis | RchiOBHm_Chr1g0335321 |
| rosa_laevigata | RLG00000029379 RLG00000029388 |
| rosa_multiflora | Rmu_sc0001268.1_g000007 Rmu_sc0001790.1_g000013 Rmu_sc0003404.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00315990 Rroxscaffold_4G00316030 |
| rosa_rugosa | Rorug01G0122000 Rorug01G0122100 Rorug01G0122600 Rorug01G0122700 Rorug01G0122800 |
| rosa_samantha | Rh1AG143300 Rh1AG143600 Rh1BG112200 Rh1BG112600 Rh1CG134900 Rh1CG135200 Rh1DG148900 Rh1DG149300 |
| rosa_wichuraiana | Rw0G009190 Rw0G009240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 588 |
| AccI | GTMKAC | 1 cut(s) | 60 |
| AccIII | TCCGGA | 1 cut(s) | 20 |
| AciI | CCGC | 2 cut(s) | 1133, 1730 |
| AclWI | GGATC | 2 cut(s) | 1605, 2021 |
| AcsI | RAATTY | 2 cut(s) | 997, 2115 |
| AcuI | CTGAAG | 6 cut(s) | 251, 791, 960, 1233, 1460, 1853 |
| AfaI | GTAC | 2 cut(s) | 11, 1653 |
| Alw21I | GWGCWC | 1 cut(s) | 930 |
| Alw26I | GTCTC | 2 cut(s) | 92, 407 |
| AlwI | GGATC | 2 cut(s) | 1605, 2021 |
| Ama87I | CYCGRG | 2 cut(s) | 929, 1118 |
| Aor13HI | TCCGGA | 1 cut(s) | 20 |
| ApeKI | GCWGC | 4 cut(s) | 50, 1625, 1873, 2035 |
| ApoI | RAATTY | 2 cut(s) | 997, 2115 |
| AseI | ATTAAT | 1 cut(s) | 357 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 804, 2004 |
| AspLEI | GCGC | 3 cut(s) | 127, 589, 685 |
| AsuHPI | GGTGA | 2 cut(s) | 323, 1843 |
| AsuNHI | GCTAGC | 2 cut(s) | 1402, 1807 |
| AvaI | CYCGRG | 2 cut(s) | 929, 1118 |
| BanII | GRGCYC | 1 cut(s) | 930 |
| BbsI | GAAGAC | 2 cut(s) | 159, 918 |
| Bbv12I | GWGCWC | 1 cut(s) | 930 |
| BbvI | GCAGC | 4 cut(s) | 37, 1637, 1885, 2047 |
| BccI | CCATC | 1 cut(s) | 1843 |
| BceAI | ACGGC | 1 cut(s) | 818 |
| BclI | TGATCA | 1 cut(s) | 1246 |
| BcoDI | GTCTC | 2 cut(s) | 92, 407 |
| BfaI | CTAG | 4 cut(s) | 1349, 1403, 1655, 1808 |
| BfmI | CTRYAG | 1 cut(s) | 1623 |
| BfoI | RGCGCY | 1 cut(s) | 128 |
| BglII | AGATCT | 8 cut(s) | 208, 379, 736, 1102, 1144, 1228, 1270, 1471 |
| BisI | GCNGC | 4 cut(s) | 51, 1626, 1874, 2036 |
| BlsI | GCNGC | 4 cut(s) | 52, 1627, 1875, 2037 |
| BmcAI | AGTACT | 1 cut(s) | 1653 |
| BmeT110I | CYCGRG | 2 cut(s) | 929, 1118 |
| BmsI | GCATC | 4 cut(s) | 973, 1288, 1489, 2092 |
| BmtI | GCTAGC | 2 cut(s) | 1406, 1811 |
| BpiI | GAAGAC | 2 cut(s) | 159, 918 |
| BsaI | GGTCTC | 1 cut(s) | 92 |
| BsaWI | WCCGGW | 1 cut(s) | 20 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 32 |
| Bse1I | ACTGG | 2 cut(s) | 1422, 1902 |
| Bse3DI | GCAATG | 1 cut(s) | 1988 |
| BseAI | TCCGGA | 1 cut(s) | 20 |
| BseMI | GCAATG | 1 cut(s) | 1988 |
| BseMII | CTCAG | 3 cut(s) | 291, 309, 402 |
| BseNI | ACTGG | 2 cut(s) | 1422, 1902 |
| BseRI | GAGGAG | 4 cut(s) | 686, 836, 1073, 1673 |
| BseXI | GCAGC | 4 cut(s) | 37, 1637, 1885, 2047 |
| BsiHKAI | GWGCWC | 1 cut(s) | 930 |
| BsiHKCI | CYCGRG | 2 cut(s) | 929, 1118 |
| BsiSI | CCGG | 1 cut(s) | 21 |
| BsmAI | GTCTC | 2 cut(s) | 92, 407 |
| BsmI | GAATGC | 1 cut(s) | 1683 |
| Bso31I | GGTCTC | 1 cut(s) | 92 |
| BsoBI | CYCGRG | 2 cut(s) | 929, 1118 |
| Bsp1286I | GDGCHC | 1 cut(s) | 930 |
| Bsp13I | TCCGGA | 1 cut(s) | 20 |
| BspACI | CCGC | 2 cut(s) | 1133, 1730 |
| BspCNI | CTCAG | 3 cut(s) | 292, 310, 403 |
| BspEI | TCCGGA | 1 cut(s) | 20 |
| BspHI | TCATGA | 1 cut(s) | 117 |
| BspMAI | CTGCAG | 1 cut(s) | 1627 |
| BspOI | GCTAGC | 2 cut(s) | 1406, 1811 |
| BspPI | GGATC | 2 cut(s) | 1605, 2021 |
| BspQI | GCTCTTC | 2 cut(s) | 189, 1548 |
| BspTNI | GGTCTC | 1 cut(s) | 92 |
| BsrDI | GCAATG | 1 cut(s) | 1988 |
| BsrI | ACTGG | 2 cut(s) | 1422, 1902 |
| Bst4CI | ACNGT | 3 cut(s) | 32, 418, 493 |
| Bst6I | CTCTTC | 8 cut(s) | 189, 254, 540, 573, 626, 971, 1529, 1548 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 889 |
| BstC8I | GCNNGC | 6 cut(s) | 87, 91, 1404, 1809, 1956, 1979 |
| BstDEI | CTNAG | 3 cut(s) | 300, 318, 411 |
| BstH2I | RGCGCY | 1 cut(s) | 128 |
| BstHHI | GCGC | 3 cut(s) | 127, 589, 685 |
| BstMAI | GTCTC | 2 cut(s) | 92, 407 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 889, 1181, 1964 |
| BstSFI | CTRYAG | 1 cut(s) | 1623 |
| BstV1I | GCAGC | 4 cut(s) | 37, 1637, 1885, 2047 |
| BstV2I | GAAGAC | 2 cut(s) | 159, 918 |
| BstX2I | RGATCY | 9 cut(s) | 208, 379, 736, 1102, 1144, 1228, 1270, 1471, 1597 |
| BstYI | RGATCY | 9 cut(s) | 208, 379, 736, 1102, 1144, 1228, 1270, 1471, 1597 |
| BtsIMutI | CAGTG | 1 cut(s) | 37 |
| Cac8I | GCNNGC | 6 cut(s) | 87, 91, 1404, 1809, 1956, 1979 |
| CciI | TCATGA | 1 cut(s) | 117 |
| CfoI | GCGC | 3 cut(s) | 127, 589, 685 |
| Csp6I | GTAC | 2 cut(s) | 10, 1652 |
| CviAII | CATG | 2 cut(s) | 118, 236 |
| CviQI | GTAC | 2 cut(s) | 10, 1652 |
| DdeI | CTNAG | 3 cut(s) | 300, 318, 411 |
| DraI | TTTAAA | 3 cut(s) | 1708, 1783, 1858 |
| Eam1104I | CTCTTC | 8 cut(s) | 189, 254, 540, 573, 626, 971, 1529, 1548 |
| EarI | CTCTTC | 8 cut(s) | 189, 254, 540, 573, 626, 971, 1529, 1548 |
| Ecl136II | GAGCTC | 1 cut(s) | 928 |
| Eco24I | GRGCYC | 1 cut(s) | 930 |
| Eco31I | GGTCTC | 1 cut(s) | 92 |
| Eco53kI | GAGCTC | 1 cut(s) | 928 |
| Eco57I | CTGAAG | 6 cut(s) | 251, 791, 960, 1233, 1460, 1853 |
| Eco88I | CYCGRG | 2 cut(s) | 929, 1118 |
| EcoICRI | GAGCTC | 1 cut(s) | 928 |
| EcoT38I | GRGCYC | 1 cut(s) | 930 |
| FaeI | CATG | 2 cut(s) | 121, 239 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 183, 215, 1089, 1121 |
| FatI | CATG | 2 cut(s) | 117, 235 |
| FauNDI | CATATG | 1 cut(s) | 55 |
| FbaI | TGATCA | 1 cut(s) | 1246 |
| FblI | GTMKAC | 1 cut(s) | 60 |
| Fnu4HI | GCNGC | 4 cut(s) | 51, 1626, 1874, 2036 |
| FriOI | GRGCYC | 1 cut(s) | 930 |
| Fsp4HI | GCNGC | 4 cut(s) | 51, 1626, 1874, 2036 |
| FspBI | CTAG | 4 cut(s) | 1349, 1403, 1655, 1808 |
| FspI | TGCGCA | 1 cut(s) | 588 |
| GlaI | GCGC | 3 cut(s) | 126, 588, 684 |
| GluI | GCNGC | 4 cut(s) | 51, 1626, 1874, 2036 |
| HaeII | RGCGCY | 1 cut(s) | 128 |
| HapII | CCGG | 1 cut(s) | 21 |
| HhaI | GCGC | 3 cut(s) | 127, 589, 685 |
| Hin1II | CATG | 2 cut(s) | 121, 239 |
| Hin6I | GCGC | 3 cut(s) | 125, 587, 683 |
| HinP1I | GCGC | 3 cut(s) | 125, 587, 683 |
| HincII | GTYRAC | 1 cut(s) | 2050 |
| HindII | GTYRAC | 1 cut(s) | 2050 |
| HindIII | AAGCTT | 3 cut(s) | 707, 1052, 1157 |
| HinfI | GANTC | 4 cut(s) | 266, 407, 718, 847 |
| HpaII | CCGG | 1 cut(s) | 21 |
| HphI | GGTGA | 2 cut(s) | 323, 1843 |
| Hpy166II | GTNNAC | 2 cut(s) | 61, 2050 |
| Hpy188I | TCNGA | 6 cut(s) | 231, 301, 412, 940, 1251, 1479 |
| Hpy8I | GTNNAC | 2 cut(s) | 61, 2050 |
| HpyAV | CCTTC | 3 cut(s) | 115, 397, 943 |
| HpyCH4III | ACNGT | 3 cut(s) | 32, 418, 493 |
| HpyCH4V | TGCA | 9 cut(s) | 53, 307, 533, 877, 883, 892, 1360, 1625, 1681 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 889, 1181, 1964 |
| HpyF3I | CTNAG | 3 cut(s) | 300, 318, 411 |
| Hsp92II | CATG | 2 cut(s) | 121, 239 |
| HspAI | GCGC | 3 cut(s) | 125, 587, 683 |
| Kpn2I | TCCGGA | 1 cut(s) | 20 |
| Ksp22I | TGATCA | 1 cut(s) | 1246 |
| LguI | GCTCTTC | 2 cut(s) | 189, 1548 |
| LmnI | GCTCC | 2 cut(s) | 219, 1609 |
| LpnPI | CCDG | 7 cut(s) | 32, 34, 293, 1403, 1868, 1883, 1940 |
| Lsp1109I | GCAGC | 4 cut(s) | 37, 1637, 1885, 2047 |
| LweI | GCATC | 4 cut(s) | 973, 1288, 1489, 2092 |
| MaeI | CTAG | 4 cut(s) | 1349, 1403, 1655, 1808 |
| MaeIII | GTNAC | 1 cut(s) | 1921 |
| MflI | RGATCY | 9 cut(s) | 208, 379, 736, 1102, 1144, 1228, 1270, 1471, 1597 |
| MhlI | GDGCHC | 1 cut(s) | 930 |
| MluCI | AATT | 8 cut(s) | 13, 561, 997, 1242, 1362, 1862, 2024, 2115 |
| MlyI | GAGTC | 1 cut(s) | 727 |
| MroI | TCCGGA | 1 cut(s) | 20 |
| MroXI | GAANNNNTTC | 2 cut(s) | 804, 2004 |
| MspA1I | CMGCKG | 1 cut(s) | 1628 |
| MspI | CCGG | 1 cut(s) | 21 |
| Mva1269I | GAATGC | 1 cut(s) | 1683 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 889, 1181, 1964 |
| NdeI | CATATG | 1 cut(s) | 55 |
| NheI | GCTAGC | 2 cut(s) | 1402, 1807 |
| NlaIII | CATG | 2 cut(s) | 121, 239 |
| NsbI | TGCGCA | 1 cut(s) | 588 |
| PaeR7I | CTCGAG | 2 cut(s) | 929, 1118 |
| PagI | TCATGA | 1 cut(s) | 117 |
| PciSI | GCTCTTC | 2 cut(s) | 189, 1548 |
| PctI | GAATGC | 1 cut(s) | 1683 |
| PdmI | GAANNNNTTC | 2 cut(s) | 804, 2004 |
| PfeI | GAWTC | 3 cut(s) | 266, 407, 847 |
| PkrI | GCNGC | 4 cut(s) | 52, 1627, 1875, 2037 |
| PleI | GAGTC | 1 cut(s) | 726 |
| PpsI | GAGTC | 1 cut(s) | 726 |
| PshBI | ATTAAT | 1 cut(s) | 357 |
| Psp124BI | GAGCTC | 1 cut(s) | 930 |
| PspXI | VCTCGAGB | 2 cut(s) | 929, 1118 |
| PstI | CTGCAG | 1 cut(s) | 1627 |
| PsuI | RGATCY | 9 cut(s) | 208, 379, 736, 1102, 1144, 1228, 1270, 1471, 1597 |
| PvuII | CAGCTG | 1 cut(s) | 1628 |
| RsaI | GTAC | 2 cut(s) | 11, 1653 |
| RsaNI | GTAC | 2 cut(s) | 10, 1652 |
| SacI | GAGCTC | 1 cut(s) | 930 |
| SapI | GCTCTTC | 2 cut(s) | 189, 1548 |
| SatI | GCNGC | 4 cut(s) | 51, 1626, 1874, 2036 |
| ScaI | AGTACT | 1 cut(s) | 1653 |
| SchI | GAGTC | 1 cut(s) | 727 |
| SduI | GDGCHC | 1 cut(s) | 930 |
| SfaNI | GCATC | 4 cut(s) | 973, 1288, 1489, 2092 |
| SfcI | CTRYAG | 1 cut(s) | 1623 |
| Sfr274I | CTCGAG | 2 cut(s) | 929, 1118 |
| SlaI | CTCGAG | 2 cut(s) | 929, 1118 |
| Sse9I | AATT | 8 cut(s) | 13, 561, 997, 1242, 1362, 1862, 2024, 2115 |
| SsiI | CCGC | 2 cut(s) | 1133, 1730 |
| SspI | AATATT | 3 cut(s) | 326, 506, 1388 |
| SspMI | CTAG | 4 cut(s) | 1349, 1403, 1655, 1808 |
| SstI | GAGCTC | 1 cut(s) | 930 |
| TaaI | ACNGT | 3 cut(s) | 32, 418, 493 |
| TaqI | TCGA | 3 cut(s) | 843, 930, 1119 |
| TasI | AATT | 8 cut(s) | 13, 561, 997, 1242, 1362, 1862, 2024, 2115 |
| TatI | WGTACW | 2 cut(s) | 9, 1651 |
| TfiI | GAWTC | 3 cut(s) | 266, 407, 847 |
| TscAI | CASTG | 1 cut(s) | 37 |
| TseI | GCWGC | 4 cut(s) | 50, 1625, 1873, 2035 |
| TspGWI | ACGGA | 1 cut(s) | 1925 |
| TspRI | CASTG | 1 cut(s) | 37 |
| VspI | ATTAAT | 1 cut(s) | 357 |
| XapI | RAATTY | 2 cut(s) | 997, 2115 |
| XhoI | CTCGAG | 2 cut(s) | 929, 1118 |
| XmiI | GTMKAC | 1 cut(s) | 60 |
| XmnI | GAANNNNTTC | 2 cut(s) | 804, 2004 |
| XspI | CTAG | 4 cut(s) | 1349, 1403, 1655, 1808 |
| ZrmI | AGTACT | 1 cut(s) | 1653 |