Rorug01G0122700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005542
Physical Location & Seq
Forward (+)
21216781 .. 21219092
2312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0122700.1

Sequence Viewer

Length: 1053 bp
ATGCTCGGATTTCTCTGTGCGCGCCGGAAAACTTGGATTGTCAGCTCCCTTTCTTCCTTTGCTCACGGCCCGGCGGCGATTCACCAGAGCCGGATCGTCCACAGCCAGCTGATTCAGCACCAACTCGCTAACTTTTCCGGCGAAACCCCCCGCCGCCGCCACCGCCACAACAGCGCCTGCCAGCTAGGGTCAGCATGCGGCGGCGGCGCCGCGGCGTCCATATGGCACGCTATTCTTCCCTCGTCCGGTCTTTGGAGGCGACGGGATCTCCGTCGTCCTGCGATCCACTACGAGCTTAAGGGCGAGGGGTCGTGGAATGCTGCTCTGGATGCTCGCCCGGCTCGCTGGCTCCACCGGCCCGACTCGGCTTGGCTACTTTTTGGAGTTTGCAACTGCCTGGCGCCGATAGACTGGGGTATTACAACAACTAACGCAACCAACGATGAGGAGTCGAATAACAAAACTGAAGCTTGTGATTCGAAAAGCCTCATTACTTCTTCTGATGAGAACTTGGAGAGCTCCGCTGATTACAGAGTTACAGGAGTGCTAGCCGATGGTCGGTGTCTCTTCAGAGCGATAGCACATGTGGCTTGCTTGAGAAATGGGGAGGAACCTCCTGATGAAAACCGTCAGAGAGAGCTCGCTGATGAATTAAGAGCTCAAGTTGTCGATGAGCTTTTAAAGAGGCGGGAGGAAACTGAATGGTTCATTGAAGGCGATTTCGATGCATATGTGAAGAGAATTCAACAGCCTTATGTTTGGGGAGGAGAACCTGAATTGCTTATGGCTTCTCATGTTAAAAAGACACCAATATCAGTCTACATGGTAGATAGAAGCTCAGGTGGTTTGGTAAACATAGCAAAATATGGTGAAGAATATGGGAAAGAAGAAGAGAAACCAATCAATGTTCTTTTTCATGGTTATGGTCACTATGACATCTTGGAGTCTTTCTCAGAACAGAGTCTGCAGAAATTTGACCAGTCAGGAACACTTGTCAAGGTAGATAGGCTAAAGGCAGCGAAGGCTAGTCCAGCATCTGCTGCCAGCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

350

Amino Acids

38.99

Weight (kDa)

6.51

Isoelectric Point (pI)

67.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 184 - 307 5e-21 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 206, 400
AccI GTMKAC 1 cut(s) 819
AccII CGCG 2 cut(s) 22, 212
AclWI GGATC 3 cut(s) 101, 273, 277
AcsI RAATTY 2 cut(s) 741, 971
AcuI CTGAAG 2 cut(s) 486, 553
AcyI GRCGYC 3 cut(s) 207, 215, 401
AfiI CCNNNNNNNGG 3 cut(s) 245, 252, 558
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 583
AgsI TTSAA 2 cut(s) 713, 746
AjnI CCWGG 1 cut(s) 396
Alw21I GWGCWC 3 cut(s) 521, 642, 661
Alw26I GTCTC 1 cut(s) 569
AlwI GGATC 3 cut(s) 101, 273, 277
AlwNI CAGNNNCTG 3 cut(s) 177, 964, 1037
AoxI GGCC 2 cut(s) 67, 356
ApeKI GCWGC 3 cut(s) 320, 1016, 1040
ApoI RAATTY 2 cut(s) 741, 971
AspLEI GCGC 5 cut(s) 22, 24, 176, 209, 403
AspS9I GGNCC 2 cut(s) 68, 357
AsuC2I CCSGG 2 cut(s) 71, 338
AsuHPI GGTGA 2 cut(s) 74, 881
AsuII TTCGAA 1 cut(s) 479
AsuNHI GCTAGC 1 cut(s) 547
BanI GGYRCC 2 cut(s) 206, 400
BanII GRGCYC 3 cut(s) 521, 642, 661
Bbv12I GWGCWC 3 cut(s) 521, 642, 661
BbvI GCAGC 3 cut(s) 307, 1027, 1028
BccI CCATC 1 cut(s) 548
BceAI ACGGC 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 707, 741
BciT130I CCWGG 1 cut(s) 398
BcnI CCSGG 2 cut(s) 71, 338
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 3 cut(s) 185, 548, 1026
BfmI CTRYAG 1 cut(s) 965
BfoI RGCGCY 3 cut(s) 177, 210, 404
BfrI CTTAAG 1 cut(s) 296
Bme1390I CCNGG 3 cut(s) 71, 338, 398
BmgT120I GGNCC 2 cut(s) 68, 357
BmiI GGNNCC 4 cut(s) 208, 350, 402, 612
BmrFI CCNGG 3 cut(s) 71, 338, 398
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 3 cut(s) 319, 715, 1043
BmtI GCTAGC 1 cut(s) 551
BmuI ACTGGG 1 cut(s) 421
BplI GAGNNNNNCTC 2 cut(s) 935, 967
Bpu10I CCTNAGC 1 cut(s) 838
Bpu14I TTCGAA 1 cut(s) 479
BpuEI CTTGAG 2 cut(s) 616, 645
BpuMI CCSGG 2 cut(s) 71, 338
BsaHI GRCGYC 3 cut(s) 207, 215, 401
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 252, 558
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 2 cut(s) 416, 979
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 3 cut(s) 245, 252, 558
BseMII CTCAG 2 cut(s) 852, 966
BseNI ACTGG 2 cut(s) 416, 979
BsePI GCGCGC 1 cut(s) 20
BseRI GAGGAG 2 cut(s) 461, 780
BseXI GCAGC 3 cut(s) 307, 1027, 1028
Bsh1236I CGCG 2 cut(s) 22, 212
BshFI GGCC 2 cut(s) 69, 358
BshNI GGYRCC 2 cut(s) 206, 400
BsiHKAI GWGCWC 3 cut(s) 521, 642, 661
BsiSI CCGG 7 cut(s) 25, 71, 91, 138, 246, 338, 355
BslI CCNNNNNNNGG 3 cut(s) 245, 252, 558
BsmAI GTCTC 1 cut(s) 569
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 2 cut(s) 69, 358
Bsp119I TTCGAA 1 cut(s) 479
Bsp1286I GDGCHC 3 cut(s) 521, 642, 661
Bsp143I GATC 3 cut(s) 93, 265, 282
BspANI GGCC 2 cut(s) 69, 358
BspCNI CTCAG 2 cut(s) 851, 965
BspFNI CGCG 2 cut(s) 22, 212
BspLI GGNNCC 4 cut(s) 208, 350, 402, 612
BspMAI CTGCAG 1 cut(s) 969
BspOI GCTAGC 1 cut(s) 551
BspPI GGATC 3 cut(s) 101, 273, 277
BspT104I TTCGAA 1 cut(s) 479
BspT107I GGYRCC 2 cut(s) 206, 400
BspTI CTTAAG 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 2 cut(s) 416, 979
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 210
BssHII GCGCGC 1 cut(s) 20
BssMI GATC 3 cut(s) 93, 265, 282
BssNI GRCGYC 3 cut(s) 207, 215, 401
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 1 cut(s) 629
Bst6I CTCTTC 3 cut(s) 572, 731, 885
BstACI GRCGYC 3 cut(s) 207, 215, 401
BstAFI CTTAAG 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 1040
BstBI TTCGAA 1 cut(s) 479
BstDEI CTNAG 2 cut(s) 838, 952
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 2 cut(s) 22, 212
BstH2I RGCGCY 3 cut(s) 177, 210, 404
BstHHI GCGC 5 cut(s) 22, 24, 176, 209, 403
BstKTI GATC 3 cut(s) 96, 268, 285
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 3 cut(s) 93, 265, 282
BstNI CCWGG 1 cut(s) 398
BstNSI RCATGY 2 cut(s) 198, 587
BstSCI CCNGG 3 cut(s) 69, 336, 396
BstSFI CTRYAG 1 cut(s) 965
BstUI CGCG 2 cut(s) 22, 212
BstV1I GCAGC 3 cut(s) 307, 1027, 1028
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 2 cut(s) 69, 358
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 334
CaiI CAGNNNCTG 3 cut(s) 177, 964, 1037
CfoI GCGC 5 cut(s) 22, 24, 176, 209, 403
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 68, 357
Cfr42I CCGCGG 1 cut(s) 213
CseI GACGC 1 cut(s) 204
CviAII CATG 5 cut(s) 195, 584, 794, 823, 917
DdeI CTNAG 2 cut(s) 838, 952
DinI GGCGCC 2 cut(s) 208, 402
DpnI GATC 3 cut(s) 95, 267, 284
DpnII GATC 3 cut(s) 93, 265, 282
DraI TTTAAA 1 cut(s) 681
Eam1104I CTCTTC 3 cut(s) 572, 731, 885
EarI CTCTTC 3 cut(s) 572, 731, 885
Ecl136II GAGCTC 3 cut(s) 519, 640, 659
Eco24I GRGCYC 3 cut(s) 521, 642, 661
Eco53kI GAGCTC 3 cut(s) 519, 640, 659
Eco57I CTGAAG 2 cut(s) 486, 553
EcoICRI GAGCTC 3 cut(s) 519, 640, 659
EcoRI GAATTC 1 cut(s) 741
EcoRII CCWGG 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 730
EcoT38I GRGCYC 3 cut(s) 521, 642, 661
EgeI GGCGCC 2 cut(s) 208, 402
EheI GGCGCC 2 cut(s) 208, 402
FaeI CATG 5 cut(s) 198, 587, 797, 826, 920
FatI CATG 5 cut(s) 194, 583, 793, 822, 916
FauI CCCGC 2 cut(s) 158, 681
FauNDI CATATG 2 cut(s) 221, 730
FblI GTMKAC 1 cut(s) 819
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 3 cut(s) 521, 642, 661
FspBI CTAG 3 cut(s) 185, 548, 1026
GlaI GCGC 5 cut(s) 21, 23, 175, 208, 402
HaeII RGCGCY 3 cut(s) 177, 210, 404
HaeIII GGCC 2 cut(s) 69, 358
HapII CCGG 7 cut(s) 25, 71, 91, 138, 246, 338, 355
HgaI GACGC 1 cut(s) 204
HhaI GCGC 5 cut(s) 22, 24, 176, 209, 403
Hin1I GRCGYC 3 cut(s) 207, 215, 401
Hin1II CATG 5 cut(s) 198, 587, 797, 826, 920
Hin6I GCGC 5 cut(s) 20, 22, 174, 207, 401
HinP1I GCGC 5 cut(s) 20, 22, 174, 207, 401
HindIII AAGCTT 1 cut(s) 468
HinfI GANTC 7 cut(s) 79, 112, 362, 449, 476, 944, 961
HpaII CCGG 7 cut(s) 25, 71, 91, 138, 246, 338, 355
HphI GGTGA 2 cut(s) 74, 881
Hpy166II GTNNAC 3 cut(s) 100, 820, 853
Hpy188I TCNGA 5 cut(s) 8, 502, 572, 633, 955
Hpy188III TCNNGA 3 cut(s) 326, 617, 984
Hpy8I GTNNAC 3 cut(s) 100, 820, 853
Hpy99I CGWCG 2 cut(s) 264, 276
HpyAV CCTTC 2 cut(s) 707, 1015
HpyCH4III ACNGT 1 cut(s) 629
HpyCH4V TGCA 3 cut(s) 390, 728, 967
HpyF3I CTNAG 2 cut(s) 838, 952
Hsp92I GRCGYC 3 cut(s) 207, 215, 401
Hsp92II CATG 5 cut(s) 198, 587, 797, 826, 920
HspAI GCGC 5 cut(s) 20, 22, 174, 207, 401
KasI GGCGCC 2 cut(s) 206, 400
KspI CCGCGG 1 cut(s) 213
Kzo9I GATC 3 cut(s) 93, 265, 282
LmnI GCTCC 3 cut(s) 50, 354, 524
Lsp1109I GCAGC 3 cut(s) 307, 1027, 1028
LweI GCATC 3 cut(s) 319, 715, 1043
MaeI CTAG 3 cut(s) 185, 548, 1026
MaeIII GTNAC 2 cut(s) 535, 926
MalI GATC 3 cut(s) 95, 267, 284
MboI GATC 3 cut(s) 93, 265, 282
MboII GAAGA 8 cut(s) 45, 227, 489, 559, 748, 884, 899, 902
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 3 cut(s) 521, 642, 661
MluCI AATT 4 cut(s) 650, 741, 776, 971
Mly113I GGCGCC 2 cut(s) 207, 401
MlyI GAGTC 4 cut(s) 356, 458, 953, 970
Mph1103I ATGCAT 1 cut(s) 730
MseI TTAA 4 cut(s) 297, 653, 680, 798
MslI CAYNNNNRTG 1 cut(s) 921
MspA1I CMGCKG 4 cut(s) 109, 212, 524, 1047
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 7 cut(s) 25, 71, 91, 138, 246, 338, 355
MspR9I CCNGG 3 cut(s) 71, 338, 398
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 2 cut(s) 22, 212
NarI GGCGCC 2 cut(s) 207, 401
NciI CCSGG 2 cut(s) 71, 338
NdeI CATATG 2 cut(s) 221, 730
NdeII GATC 3 cut(s) 93, 265, 282
NheI GCTAGC 1 cut(s) 547
NlaIII CATG 5 cut(s) 198, 587, 797, 826, 920
NlaIV GGNNCC 4 cut(s) 208, 350, 402, 612
NmeAIII GCCGAG 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 926
NsiI ATGCAT 1 cut(s) 730
NspI RCATGY 2 cut(s) 198, 587
NspV TTCGAA 1 cut(s) 479
PaeI GCATGC 1 cut(s) 198
PauI GCGCGC 1 cut(s) 20
PciI ACATGT 1 cut(s) 583
PcsI WCGNNNNNNNCGW 2 cut(s) 268, 438
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 3 cut(s) 79, 112, 476
PleI GAGTC 4 cut(s) 356, 457, 952, 969
PluTI GGCGCC 2 cut(s) 210, 404
PpsI GAGTC 4 cut(s) 356, 457, 952, 969
PscI ACATGT 1 cut(s) 583
Psp124BI GAGCTC 3 cut(s) 521, 642, 661
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 4 cut(s) 208, 350, 402, 612
PspPI GGNCC 2 cut(s) 68, 357
PstI CTGCAG 1 cut(s) 969
PstNI CAGNNNCTG 3 cut(s) 177, 964, 1037
PsuI RGATCY 1 cut(s) 265
PteI GCGCGC 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 921
SacI GAGCTC 3 cut(s) 521, 642, 661
SacII CCGCGG 1 cut(s) 213
SaqAI TTAA 4 cut(s) 297, 653, 680, 798
Sau3AI GATC 3 cut(s) 93, 265, 282
Sau96I GGNCC 2 cut(s) 68, 357
SchI GAGTC 4 cut(s) 356, 458, 953, 970
ScrFI CCNGG 3 cut(s) 71, 338, 398
SduI GDGCHC 3 cut(s) 521, 642, 661
SfaNI GCATC 3 cut(s) 319, 715, 1043
SfcI CTRYAG 1 cut(s) 965
SfoI GGCGCC 2 cut(s) 208, 402
Sfr303I CCGCGG 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 479
SgrBI CCGCGG 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 921
SmlI CTYRAG 3 cut(s) 296, 595, 660
SmoI CTYRAG 3 cut(s) 296, 595, 660
SphI GCATGC 1 cut(s) 198
Sse9I AATT 4 cut(s) 650, 741, 776, 971
SspDI GGCGCC 2 cut(s) 206, 400
SspMI CTAG 3 cut(s) 185, 548, 1026
SstI GAGCTC 3 cut(s) 521, 642, 661
StyD4I CCNGG 3 cut(s) 69, 336, 396
TaaI ACNGT 1 cut(s) 629
TaqI TCGA 4 cut(s) 452, 479, 669, 723
TasI AATT 4 cut(s) 650, 741, 776, 971
TauI GCSGC 8 cut(s) 77, 156, 159, 201, 204, 207, 212, 215
TfiI GAWTC 3 cut(s) 79, 112, 476
Tru1I TTAA 4 cut(s) 297, 653, 680, 798
Tru9I TTAA 4 cut(s) 297, 653, 680, 798
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 3 cut(s) 320, 1016, 1040
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 4 cut(s) 636, 663, 697, 905
TspGWI ACGGA 1 cut(s) 260
Vha464I CTTAAG 1 cut(s) 296
XapI RAATTY 2 cut(s) 741, 971
XceI RCATGY 2 cut(s) 198, 587
XmiI GTMKAC 1 cut(s) 819
XspI CTAG 3 cut(s) 185, 548, 1026
Zsp2I ATGCAT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.