Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003404.1

Orthogroup ID

OG0005542

Physical Location & Seq

Genomic Coordinates Forward (+)

13048 .. 15722

Gene Structure 2675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003404.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2037 bp

atgcttgcgagctgtgagacccacaagaaagaactcatgaaggcgcttgaacagagtgaagttgaaaaggaagaccttaagaggcagattgagaaaagcaaaacagaaaaagaagagcttaagaaagatcttgagtggagcgaggctctgaagcatgatctcaagaaagagcttgtgaagagtgaatctcataagaaagaactcaagaataaagtgtctgagttgcagggtgaggctgagaaatattttacgaaggaaatagagtttatgaggattaatcttcaacaacatagtagagatcttgaggaaaaactcaatatgaaggaatctgagacagttgagcttaagaaacagctcaagaagattgaggctcaaaaggaatatcttaagtatgagcttgagcagacgacagttgagaaagaatattttgaagctgaaaaggaaaaacttgcaactgaaaatgaagagtttgaaactgaaattatatatcttgaggaagagtttgcgcagagtgaagctcaaaaggaaaaccttaagaaacaacttgagaagagtgaagctcataaaaaagagctaaaggaagctcttgaggagagcgaagcgcaaaagaatgatcttgtggagaagcttggtttgagtcaagctataaacaaagatcttaaaaaaaaacttgagcattgtgaagctaaaaaaaaggaacttgaaaatgaaaatgaacggcttcagcaagagcttgaggagagcaaagctgaaaagatcgagattcaaaaagaacttgagcaacttgatatgcaactgcaacaagtgcaaagtgaagctcaaaaggaagaccttaagaaagagctcgagcaatctgaacttgagaaggaaaatctaaagaaaaaacttgagaagagtgatgctcaaaatgaaaattttaagaaaaggattgagcagattgaagctgaaaagaaacatattgaggaaaagcttgaggagtgtgaaactgaaagagaagatattgaagctgaaaaagaagatcttgaggaaaggctcgaggagtgtgaagcggaaaaggaagatcttgaggaaaagcttgagcaaagcctcgctaaaaaggctcatcttaagaaagagcttgagcaaactgaagctctaaatgaagatcttaagaaaaaaattgatcagaatgaagttgtaagagcagatcttaagaaagagcttgagcagagtgatgctgaaaagatagaactaaagaaagaacttgaccaacgggagttgaaactagaaaaaatgcaaattagtgaagctgaaaaggaagaatattttaagaatgagctagcacaaaatgaactggaaaaagaagatattaagcaagaacttgagaatagcgtagctatgaataaagatcttcagaaaacacttgaggatagtgatgctgaaaaggaggaactcaaggaaaagctcaagaagagtgaaactgaaaaggaagagcttaaggaagttgttgtggagatagaagctaaaaaggtggatcttaagagggagcttgagcggactgcagctgaaaagaaagagcttaccaaagtactagaggagaaaaaactgaaacgaatgcagagtgaagttgaaatggaagcatttaaaaagcagattgaagttgaagcggaagatgttaagagagaacttgagatgagcaaagctgaaatgataacatttaaaaagcagagtgaagttgaaatgctagctgttgagaaagaacttgaggtgagcaaagctgaaaagatggcatttaaaaaattacttcagcagcgtgatctggaacttcaacaactggtggaacacacggataagaaagttactttagagcaaaacaaagttgatgacttgctggcagacttggcaaaggaacgcaagcaatggcagagtgaaaaggaaagacttcaatggatcaatgctgaattggaaaagcagcttgaagatgtcaacaagaaaaacatcagcatagaggaagatgatgagttagaagttgttgatgatgcgtggttgaaaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

678

Amino Acids

80.8

Weight (kDa)

4.86

Isoelectric Point (pI)

55.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06620 FvH4_7g06640 FvH4_7g06640
malus_domestica	MD02G1237600.v1.1
prunus_persica	Prupe.2G094400_v2.0.a1
pyrus_communis	pycom02g20830
rosa_chinensis	RchiOBHm_Chr1g0335321
rosa_laevigata	RLG00000029379 RLG00000029388
rosa_multiflora	Rmu_sc0001268.1_g000007 Rmu_sc0001790.1_g000013 Rmu_sc0003404.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315990 Rroxscaffold_4G00316030
rosa_rugosa	Rorug01G0122000 Rorug01G0122100 Rorug01G0122600 Rorug01G0122700 Rorug01G0122800
rosa_samantha	Rh1AG143300 Rh1AG143600 Rh1BG112200 Rh1BG112600 Rh1CG134900 Rh1CG135200 Rh1DG148900 Rh1DG149300
rosa_wichuraiana	Rw0G009190 Rw0G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	507
AccBSI	CCGCTC	1 cut(s)	1534
AciI	CCGC	3 cut(s)	1049, 1534, 1646
AclWI	GGATC	2 cut(s)	1521, 1937
AcsI	RAATTY	2 cut(s)	913, 2031
AcuI	CTGAAG	5 cut(s)	170, 707, 1149, 1376, 1769
AfaI	GTAC	1 cut(s)	1569
Alw21I	GWGCWC	1 cut(s)	846
Alw26I	GTCTC	2 cut(s)	11, 326
AlwI	GGATC	2 cut(s)	1521, 1937
Ama87I	CYCGRG	2 cut(s)	845, 1034
ApeKI	GCWGC	3 cut(s)	1541, 1789, 1951
ApoI	RAATTY	2 cut(s)	913, 2031
AseI	ATTAAT	1 cut(s)	276
Asp700I	GAANNNNTTC	2 cut(s)	720, 1920
AspLEI	GCGC	3 cut(s)	46, 508, 604
AsuHPI	GGTGA	2 cut(s)	242, 1759
AsuNHI	GCTAGC	2 cut(s)	1318, 1723
AvaI	CYCGRG	2 cut(s)	845, 1034
BanII	GRGCYC	1 cut(s)	846
BbsI	GAAGAC	2 cut(s)	78, 834
Bbv12I	GWGCWC	1 cut(s)	846
BbvI	GCAGC	3 cut(s)	1553, 1801, 1963
BccI	CCATC	1 cut(s)	1759
BceAI	ACGGC	1 cut(s)	734
BclI	TGATCA	1 cut(s)	1162
BcoDI	GTCTC	2 cut(s)	11, 326
BfaI	CTAG	4 cut(s)	1265, 1319, 1571, 1724
BfmI	CTRYAG	1 cut(s)	1539
BfoI	RGCGCY	1 cut(s)	47
BglII	AGATCT	8 cut(s)	127, 298, 655, 1018, 1060, 1144, 1186, 1387
BisI	GCNGC	3 cut(s)	1542, 1790, 1952
BlsI	GCNGC	3 cut(s)	1543, 1791, 1953
BmcAI	AGTACT	1 cut(s)	1569
BmeT110I	CYCGRG	2 cut(s)	845, 1034
BmsI	GCATC	4 cut(s)	889, 1204, 1405, 2008
BmtI	GCTAGC	2 cut(s)	1322, 1727
BpiI	GAAGAC	2 cut(s)	78, 834
BsaI	GGTCTC	1 cut(s)	11
Bse1I	ACTGG	2 cut(s)	1338, 1818
Bse3DI	GCAATG	1 cut(s)	1904
BseMI	GCAATG	1 cut(s)	1904
BseMII	CTCAG	3 cut(s)	210, 228, 321
BseNI	ACTGG	2 cut(s)	1338, 1818
BseRI	GAGGAG	5 cut(s)	605, 752, 989, 1052, 1589
BseXI	GCAGC	3 cut(s)	1553, 1801, 1963
BsiHKAI	GWGCWC	1 cut(s)	846
BsiHKCI	CYCGRG	2 cut(s)	845, 1034
BsmAI	GTCTC	2 cut(s)	11, 326
BsmI	GAATGC	1 cut(s)	1599
Bso31I	GGTCTC	1 cut(s)	11
BsoBI	CYCGRG	2 cut(s)	845, 1034
Bsp1286I	GDGCHC	1 cut(s)	846
BspACI	CCGC	3 cut(s)	1049, 1534, 1646
BspCNI	CTCAG	3 cut(s)	211, 229, 322
BspHI	TCATGA	1 cut(s)	36
BspMAI	CTGCAG	1 cut(s)	1543
BspOI	GCTAGC	2 cut(s)	1322, 1727
BspPI	GGATC	2 cut(s)	1521, 1937
BspQI	GCTCTTC	2 cut(s)	108, 1464
BspTNI	GGTCTC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	1534
BsrDI	GCAATG	1 cut(s)	1904
BsrI	ACTGG	2 cut(s)	1338, 1818
Bst4CI	ACNGT	2 cut(s)	337, 412
Bst6I	CTCTTC	8 cut(s)	108, 173, 459, 492, 545, 887, 1445, 1464
BstAPI	GCANNNNNTGC	1 cut(s)	805
BstC8I	GCNNGC	6 cut(s)	6, 10, 1320, 1725, 1872, 1895
BstDEI	CTNAG	3 cut(s)	219, 237, 330
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	3 cut(s)	46, 508, 604
BstMAI	GTCTC	2 cut(s)	11, 326
BstMWI	GCNNNNNNNGC	3 cut(s)	805, 1097, 1880
BstSFI	CTRYAG	1 cut(s)	1539
BstV1I	GCAGC	3 cut(s)	1553, 1801, 1963
BstV2I	GAAGAC	2 cut(s)	78, 834
BstX2I	RGATCY	9 cut(s)	127, 298, 655, 1018, 1060, 1144, 1186, 1387, 1513
BstYI	RGATCY	9 cut(s)	127, 298, 655, 1018, 1060, 1144, 1186, 1387, 1513
Cac8I	GCNNGC	6 cut(s)	6, 10, 1320, 1725, 1872, 1895
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	3 cut(s)	46, 508, 604
Csp6I	GTAC	1 cut(s)	1568
CviAII	CATG	2 cut(s)	37, 155
CviQI	GTAC	1 cut(s)	1568
DdeI	CTNAG	3 cut(s)	219, 237, 330
DraI	TTTAAA	3 cut(s)	1624, 1699, 1774
Eam1104I	CTCTTC	8 cut(s)	108, 173, 459, 492, 545, 887, 1445, 1464
EarI	CTCTTC	8 cut(s)	108, 173, 459, 492, 545, 887, 1445, 1464
Ecl136II	GAGCTC	1 cut(s)	844
Eco24I	GRGCYC	1 cut(s)	846
Eco31I	GGTCTC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	844
Eco57I	CTGAAG	5 cut(s)	170, 707, 1149, 1376, 1769
Eco88I	CYCGRG	2 cut(s)	845, 1034
EcoICRI	GAGCTC	1 cut(s)	844
EcoT38I	GRGCYC	1 cut(s)	846
FaeI	CATG	2 cut(s)	40, 158
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 1005, 1037
FatI	CATG	2 cut(s)	36, 154
FbaI	TGATCA	1 cut(s)	1162
Fnu4HI	GCNGC	3 cut(s)	1542, 1790, 1952
FriOI	GRGCYC	1 cut(s)	846
Fsp4HI	GCNGC	3 cut(s)	1542, 1790, 1952
FspBI	CTAG	4 cut(s)	1265, 1319, 1571, 1724
FspI	TGCGCA	1 cut(s)	507
GlaI	GCGC	3 cut(s)	45, 507, 603
GluI	GCNGC	3 cut(s)	1542, 1790, 1952
HaeII	RGCGCY	1 cut(s)	47
HhaI	GCGC	3 cut(s)	46, 508, 604
Hin1II	CATG	2 cut(s)	40, 158
Hin6I	GCGC	3 cut(s)	44, 506, 602
HinP1I	GCGC	3 cut(s)	44, 506, 602
HincII	GTYRAC	1 cut(s)	1966
HindII	GTYRAC	1 cut(s)	1966
HindIII	AAGCTT	3 cut(s)	626, 968, 1073
HinfI	GANTC	4 cut(s)	185, 326, 637, 763
HphI	GGTGA	2 cut(s)	242, 1759
Hpy166II	GTNNAC	1 cut(s)	1966
Hpy188I	TCNGA	6 cut(s)	150, 220, 331, 856, 1167, 1395
Hpy8I	GTNNAC	1 cut(s)	1966
HpyAV	CCTTC	4 cut(s)	34, 247, 316, 859
HpyCH4III	ACNGT	2 cut(s)	337, 412
HpyCH4V	TGCA	8 cut(s)	226, 452, 793, 799, 808, 1276, 1541, 1597
HpyF10VI	GCNNNNNNNGC	3 cut(s)	805, 1097, 1880
HpyF3I	CTNAG	3 cut(s)	219, 237, 330
Hsp92II	CATG	2 cut(s)	40, 158
HspAI	GCGC	3 cut(s)	44, 506, 602
Ksp22I	TGATCA	1 cut(s)	1162
LguI	GCTCTTC	2 cut(s)	108, 1464
LmnI	GCTCC	2 cut(s)	138, 1525
LpnPI	CCDG	5 cut(s)	212, 1319, 1784, 1799, 1856
Lsp1109I	GCAGC	3 cut(s)	1553, 1801, 1963
LweI	GCATC	4 cut(s)	889, 1204, 1405, 2008
MaeI	CTAG	4 cut(s)	1265, 1319, 1571, 1724
MaeIII	GTNAC	1 cut(s)	1837
MbiI	CCGCTC	1 cut(s)	1534
MflI	RGATCY	9 cut(s)	127, 298, 655, 1018, 1060, 1144, 1186, 1387, 1513
MhlI	GDGCHC	1 cut(s)	846
MluCI	AATT	7 cut(s)	480, 913, 1158, 1278, 1778, 1940, 2031
MlyI	GAGTC	1 cut(s)	646
MroXI	GAANNNNTTC	2 cut(s)	720, 1920
MspA1I	CMGCKG	1 cut(s)	1544
Mva1269I	GAATGC	1 cut(s)	1599
MwoI	GCNNNNNNNGC	3 cut(s)	805, 1097, 1880
NheI	GCTAGC	2 cut(s)	1318, 1723
NlaIII	CATG	2 cut(s)	40, 158
NsbI	TGCGCA	1 cut(s)	507
PaeR7I	CTCGAG	2 cut(s)	845, 1034
PagI	TCATGA	1 cut(s)	36
PciSI	GCTCTTC	2 cut(s)	108, 1464
PctI	GAATGC	1 cut(s)	1599
PdmI	GAANNNNTTC	2 cut(s)	720, 1920
PfeI	GAWTC	3 cut(s)	185, 326, 763
PkrI	GCNGC	3 cut(s)	1543, 1791, 1953
PleI	GAGTC	1 cut(s)	645
PpsI	GAGTC	1 cut(s)	645
PshBI	ATTAAT	1 cut(s)	276
Psp124BI	GAGCTC	1 cut(s)	846
PspXI	VCTCGAGB	2 cut(s)	845, 1034
PstI	CTGCAG	1 cut(s)	1543
PsuI	RGATCY	9 cut(s)	127, 298, 655, 1018, 1060, 1144, 1186, 1387, 1513
PvuII	CAGCTG	1 cut(s)	1544
RsaI	GTAC	1 cut(s)	1569
RsaNI	GTAC	1 cut(s)	1568
SacI	GAGCTC	1 cut(s)	846
SapI	GCTCTTC	2 cut(s)	108, 1464
SatI	GCNGC	3 cut(s)	1542, 1790, 1952
ScaI	AGTACT	1 cut(s)	1569
SchI	GAGTC	1 cut(s)	646
SduI	GDGCHC	1 cut(s)	846
SfaNI	GCATC	4 cut(s)	889, 1204, 1405, 2008
SfcI	CTRYAG	1 cut(s)	1539
Sfr274I	CTCGAG	2 cut(s)	845, 1034
SlaI	CTCGAG	2 cut(s)	845, 1034
Sse9I	AATT	7 cut(s)	480, 913, 1158, 1278, 1778, 1940, 2031
SsiI	CCGC	3 cut(s)	1049, 1534, 1646
SspI	AATATT	3 cut(s)	245, 425, 1304
SspMI	CTAG	4 cut(s)	1265, 1319, 1571, 1724
SstI	GAGCTC	1 cut(s)	846
TaaI	ACNGT	2 cut(s)	337, 412
TaqI	TCGA	3 cut(s)	759, 846, 1035
TasI	AATT	7 cut(s)	480, 913, 1158, 1278, 1778, 1940, 2031
TatI	WGTACW	1 cut(s)	1567
TfiI	GAWTC	3 cut(s)	185, 326, 763
TseI	GCWGC	3 cut(s)	1541, 1789, 1951
TspGWI	ACGGA	1 cut(s)	1841
VspI	ATTAAT	1 cut(s)	276
XapI	RAATTY	2 cut(s)	913, 2031
XhoI	CTCGAG	2 cut(s)	845, 1034
XmnI	GAANNNNTTC	2 cut(s)	720, 1920
XspI	CTAG	4 cut(s)	1265, 1319, 1571, 1724
ZrmI	AGTACT	1 cut(s)	1569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.