Rroxscaffold_4G00316030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005542
Physical Location & Seq
Forward (+)
40651092 .. 40652785
1694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00316030.1

Sequence Viewer

Length: 945 bp
ATGTTGATGACTGAAATCGTCTTTGTACAAAAAAGTGATGATCATTGTACTAGTTATCGTGATAAGCATGAACTATATTTGATGATGATAGATAGATTACTGAACACGACACTCATTCTTTTTTCAGGTTTCAAGTCTGACATGCAGTATCATAGCCCAGAAGAAATGGAAACTGGAAATTTAACACAAAGTGTGCCAAGAAGTCTAGGCTTGTTAAAATATGTAGCTCAAAGGAAAGAGCTTGAGAGGATAGAAGCCAAGAGGAATGAACTTACGAAATTGTATCATCAGACTGAAGCAAAGCTTTTGGCTAAAAGCTTAGACCTCAAGATCAGTGAAGGAAAGCTCTTGGCTAAAACTGAAGACCTCAAAAAGAGTGAAGCAAATCTTTTGGCTAAAACCGAAGAGCTCAAGAAGAGTGTAGCAGAGAACTTGGCTAAAAACGAAGAGCTCATGATCATTGAAGCTCAGAAGGAGGAGCTTTCAAATTTGCTTCGGCAAAGTGAAAGTCAAAACAAACAACTTGAGAAAGTTCTTGAGCAGATTGGGGATGAAGTGGAAAATCTGAAGAGAGCACATGCACACTGTGAACAAGTCAAAAAGTTTGAGCTTGAGCAGACTAGAGCTGTAAGGAAAGATATTGAGGAAAAGCTTACACAAAGTGAAGCTCAAGTGGAAAATCTTAAGGAGGCACTTGGCAAGAGTGAAGCCGAGAAAATAGAGATGTGGAGGAAAATGAAGAAGGAGAGGGTAATTTTAGAGCAAAAGAAAGCTGATGAATTAGTGGCATGGTTAGCAGAAGCGCGCAAGAAATGGGAGAGTGAAAAAGAAAGACTTCGCTGTATAAACACCGAACTAGCGAAGCAGCTTGAAGATGCCAAGATGAAAAGCATTGATGATGAGTTCGAAGTTGTTGATGATGAGTTTGATGTTAAAGTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

36.7

Weight (kDa)

5.5

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 805
AcsI RAATTY 2 cut(s) 178, 487
AcuI CTGAAG 3 cut(s) 315, 381, 587
AdeI CACNNNGTG 3 cut(s) 191, 587, 662
AfaI GTAC 2 cut(s) 27, 49
AflII CTTAAG 1 cut(s) 683
AgsI TTSAA 4 cut(s) 133, 464, 486, 872
AhlI ACTAGT 1 cut(s) 50
Alw21I GWGCWC 3 cut(s) 411, 453, 577
ApeKI GCWGC 1 cut(s) 865
ApoI RAATTY 2 cut(s) 178, 487
ArsI GACNNNNNNTTYG 2 cut(s) 493, 525
Asp700I GAANNNNTTC 1 cut(s) 834
AspLEI GCGC 2 cut(s) 805, 807
AsuII TTCGAA 1 cut(s) 906
BanII GRGCYC 2 cut(s) 411, 453
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 3 cut(s) 411, 453, 577
BbvI GCAGC 1 cut(s) 877
BclI TGATCA 2 cut(s) 40, 456
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 4 cut(s) 51, 206, 621, 857
BfrI CTTAAG 1 cut(s) 683
BisI GCNGC 1 cut(s) 866
BlsI GCNGC 1 cut(s) 867
BmsI GCATC 1 cut(s) 865
BpiI GAAGAC 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 906
BpuEI CTTGAG 7 cut(s) 263, 311, 395, 545, 557, 632, 654
Bse1I ACTGG 1 cut(s) 178
BseGI GGATG 1 cut(s) 556
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 1 cut(s) 178
BsePI GCGCGC 1 cut(s) 803
BseRI GAGGAG 1 cut(s) 491
BseXI GCAGC 1 cut(s) 877
Bsh1236I CGCG 1 cut(s) 805
BsiHKAI GWGCWC 3 cut(s) 411, 453, 577
Bsp119I TTCGAA 1 cut(s) 906
Bsp1286I GDGCHC 3 cut(s) 411, 453, 577
Bsp1407I TGTACA 1 cut(s) 25
Bsp143I GATC 3 cut(s) 40, 330, 456
BspCNI CTCAG 1 cut(s) 481
BspFNI CGCG 1 cut(s) 805
BspHI TCATGA 1 cut(s) 453
BspQI GCTCTTC 2 cut(s) 399, 441
BspT104I TTCGAA 1 cut(s) 906
BspTI CTTAAG 1 cut(s) 683
BsrGI TGTACA 1 cut(s) 25
BsrI ACTGG 1 cut(s) 178
BssHII GCGCGC 1 cut(s) 803
BssMI GATC 3 cut(s) 40, 330, 456
Bst4CI ACNGT 1 cut(s) 587
Bst6I CTCTTC 4 cut(s) 399, 410, 441, 563
BstAFI CTTAAG 1 cut(s) 683
BstAUI TGTACA 1 cut(s) 25
BstBI TTCGAA 1 cut(s) 906
BstC8I GCNNGC 1 cut(s) 805
BstDEI CTNAG 2 cut(s) 319, 468
BstF5I GGATG 1 cut(s) 556
BstFNI CGCG 1 cut(s) 805
BstHHI GCGC 2 cut(s) 805, 807
BstKTI GATC 3 cut(s) 43, 333, 459
BstMBI GATC 3 cut(s) 40, 330, 456
BstMWI GCNNNNNNNGC 1 cut(s) 794
BstNSI RCATGY 2 cut(s) 145, 581
BstUI CGCG 1 cut(s) 805
BstV1I GCAGC 1 cut(s) 877
BstV2I GAAGAC 1 cut(s) 369
BtsCI GGATG 1 cut(s) 556
BtsIMutI CAGTG 2 cut(s) 340, 583
Cac8I GCNNGC 1 cut(s) 805
CciI TCATGA 1 cut(s) 453
CfoI GCGC 2 cut(s) 805, 807
Csp6I GTAC 2 cut(s) 26, 48
CviAII CATG 5 cut(s) 68, 142, 454, 578, 789
CviQI GTAC 2 cut(s) 26, 48
DdeI CTNAG 2 cut(s) 319, 468
DpnI GATC 3 cut(s) 42, 332, 458
DpnII GATC 3 cut(s) 40, 330, 456
DraIII CACNNNGTG 3 cut(s) 191, 587, 662
Eam1104I CTCTTC 4 cut(s) 399, 410, 441, 563
EarI CTCTTC 4 cut(s) 399, 410, 441, 563
Ecl136II GAGCTC 2 cut(s) 409, 451
Eco24I GRGCYC 2 cut(s) 411, 453
Eco53kI GAGCTC 2 cut(s) 409, 451
Eco57I CTGAAG 3 cut(s) 315, 381, 587
EcoICRI GAGCTC 2 cut(s) 409, 451
EcoT38I GRGCYC 2 cut(s) 411, 453
FaeI CATG 5 cut(s) 71, 145, 457, 581, 792
FaiI YATR 9 cut(s) 69, 76, 143, 153, 222, 455, 579, 790, 845
FalI AAGNNNNNCTT 6 cut(s) 288, 320, 372, 404, 819, 851
FatI CATG 5 cut(s) 67, 141, 453, 577, 788
FbaI TGATCA 2 cut(s) 40, 456
Fnu4HI GCNGC 1 cut(s) 866
FokI GGATG 1 cut(s) 563
FriOI GRGCYC 2 cut(s) 411, 453
Fsp4HI GCNGC 1 cut(s) 866
FspBI CTAG 4 cut(s) 51, 206, 621, 857
GlaI GCGC 2 cut(s) 804, 806
GluI GCNGC 1 cut(s) 866
HhaI GCGC 2 cut(s) 805, 807
Hin1II CATG 5 cut(s) 71, 145, 457, 581, 792
Hin6I GCGC 2 cut(s) 803, 805
HinP1I GCGC 2 cut(s) 803, 805
HindIII AAGCTT 3 cut(s) 302, 316, 650
Hpy166II GTNNAC 1 cut(s) 590
Hpy188I TCNGA 4 cut(s) 139, 291, 471, 567
Hpy188III TCNNGA 5 cut(s) 59, 328, 412, 454, 536
Hpy8I GTNNAC 1 cut(s) 590
HpyAV CCTTC 3 cut(s) 332, 466, 736
HpyCH4III ACNGT 1 cut(s) 587
HpyCH4V TGCA 2 cut(s) 145, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 794
HpyF3I CTNAG 2 cut(s) 319, 468
Hsp92II CATG 5 cut(s) 71, 145, 457, 581, 792
HspAI GCGC 2 cut(s) 803, 805
Ksp22I TGATCA 2 cut(s) 40, 456
Kzo9I GATC 3 cut(s) 40, 330, 456
LguI GCTCTTC 2 cut(s) 399, 441
LmnI GCTCC 1 cut(s) 478
LpnPI CCDG 3 cut(s) 111, 159, 171
Lsp1109I GCAGC 1 cut(s) 877
LweI GCATC 1 cut(s) 865
MaeI CTAG 4 cut(s) 51, 206, 621, 857
MalI GATC 3 cut(s) 42, 332, 458
MboI GATC 3 cut(s) 40, 330, 456
MboII GAAGA 8 cut(s) 173, 374, 416, 427, 458, 580, 751, 884
MhlI GDGCHC 3 cut(s) 411, 453, 577
MluCI AATT 5 cut(s) 178, 278, 487, 753, 779
MnlI CCTC 9 cut(s) 240, 255, 335, 377, 469, 637, 682, 723, 741
MroXI GAANNNNTTC 1 cut(s) 834
MseI TTAA 5 cut(s) 182, 215, 684, 933, 943
MspCI CTTAAG 1 cut(s) 683
MvnI CGCG 1 cut(s) 805
MwoI GCNNNNNNNGC 1 cut(s) 794
NdeII GATC 3 cut(s) 40, 330, 456
NlaIII CATG 5 cut(s) 71, 145, 457, 581, 792
NmeAIII GCCGAG 1 cut(s) 736
NspI RCATGY 2 cut(s) 145, 581
NspV TTCGAA 1 cut(s) 906
PagI TCATGA 1 cut(s) 453
PauI GCGCGC 1 cut(s) 803
PciSI GCTCTTC 2 cut(s) 399, 441
PdmI GAANNNNTTC 1 cut(s) 834
PkrI GCNGC 1 cut(s) 867
Psp124BI GAGCTC 2 cut(s) 411, 453
PteI GCGCGC 1 cut(s) 803
RsaI GTAC 2 cut(s) 27, 49
RsaNI GTAC 2 cut(s) 26, 48
SacI GAGCTC 2 cut(s) 411, 453
SapI GCTCTTC 2 cut(s) 399, 441
SaqAI TTAA 5 cut(s) 182, 215, 684, 933, 943
SatI GCNGC 1 cut(s) 866
Sau3AI GATC 3 cut(s) 40, 330, 456
SduI GDGCHC 3 cut(s) 411, 453, 577
SfaNI GCATC 1 cut(s) 865
SfuI TTCGAA 1 cut(s) 906
SmlI CTYRAG 8 cut(s) 242, 326, 410, 524, 536, 611, 669, 683
SmoI CTYRAG 8 cut(s) 242, 326, 410, 524, 536, 611, 669, 683
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 5 cut(s) 178, 278, 487, 753, 779
SspMI CTAG 4 cut(s) 51, 206, 621, 857
SstI GAGCTC 2 cut(s) 411, 453
TaaI ACNGT 1 cut(s) 587
TaqI TCGA 1 cut(s) 906
TasI AATT 5 cut(s) 178, 278, 487, 753, 779
TatI WGTACW 2 cut(s) 25, 47
Tru1I TTAA 5 cut(s) 182, 215, 684, 933, 943
Tru9I TTAA 5 cut(s) 182, 215, 684, 933, 943
TscAI CASTG 2 cut(s) 340, 590
TseI GCWGC 1 cut(s) 865
TspDTI ATGAA 6 cut(s) 84, 282, 567, 752, 792, 899
TspRI CASTG 2 cut(s) 340, 590
Vha464I CTTAAG 1 cut(s) 683
XapI RAATTY 2 cut(s) 178, 487
XceI RCATGY 2 cut(s) 145, 581
XmnI GAANNNNTTC 1 cut(s) 834
XspI CTAG 4 cut(s) 51, 206, 621, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.