Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001790.1

Orthogroup ID

OG0005542

Physical Location & Seq

Genomic Coordinates Reverse (-)

68855 .. 72415

Gene Structure 3561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001790.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atggcggcgactgagatgatcaagttggcagtaactttactagggtttgtgttgattggttgttttggcctgggtctggtcttggttggtttttcaggtttcaagtctgacgcgtatcatagcccagaagaaatggaaactggaaatttaacacaaagtgtgccaagaagtctaggcttgttaaaatatgtagctcaaaggaaagagcttgagaggatagaagccaagaggaatgaacttacgaaattgtatcatcaaactgaagcaaagcttttggctaaaagcttagacctcaagatcagtgaaggaaagctcttggctaaaactgaagacctcaagaagagtgaagcaaatctcttggctaaaaccaaagggctcaagaagagtgtggcagagaacttggctaaaaacgaagagctcatgattagtgaagctcagaaggaggagctttcaaatttgcttgggcaaagtgaaagtcaaaacaaacaacttaagaaagttcttgagcagattggggatgaagtggaaaatctgaagagagcacatgcacactgtgaacaagtcaaaaagtttgagcttgagcagactggagctgtaaggaaagatcttgaggaaaagcttagacaaagtgaagctcaagtggaagatcttaaggaggcacttggcaagagtggagccgagaaaatagagatgaaggagagggttattttagagcaaaagaaagctgatgaattagtggcatggttagcagaagcgcgcaagaaatgggagagtgaaaaagaaagacttcgctatataaacaccgaactagcgaagcagcttgaagatgccaagatgaaaagcattgatgatgagttcgaagttgttgacgatgagtttgatgttaaactgatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

33.76

Weight (kDa)

5.61

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06620 FvH4_7g06640 FvH4_7g06640
malus_domestica	MD02G1237600.v1.1
prunus_persica	Prupe.2G094400_v2.0.a1
pyrus_communis	pycom02g20830
rosa_chinensis	RchiOBHm_Chr1g0335321
rosa_laevigata	RLG00000029379 RLG00000029388
rosa_multiflora	Rmu_sc0001268.1_g000007 Rmu_sc0001790.1_g000013 Rmu_sc0003404.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315990 Rroxscaffold_4G00316030
rosa_rugosa	Rorug01G0122000 Rorug01G0122100 Rorug01G0122600 Rorug01G0122700 Rorug01G0122800
rosa_samantha	Rh1AG143300 Rh1AG143600 Rh1BG112200 Rh1BG112600 Rh1CG134900 Rh1CG135200 Rh1DG148900 Rh1DG149300
rosa_wichuraiana	Rw0G009190 Rw0G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	113, 757
AciI	CCGC	1 cut(s)	5
AcsI	RAATTY	2 cut(s)	145, 454
AcuI	CTGAAG	3 cut(s)	282, 348, 554
AdeI	CACNNNGTG	2 cut(s)	158, 554
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflII	CTTAAG	2 cut(s)	491, 650
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	3 cut(s)	103, 453, 824
AjnI	CCWGG	1 cut(s)	69
Alw21I	GWGCWC	2 cut(s)	420, 544
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	817
ApoI	RAATTY	2 cut(s)	145, 454
ArsI	GACNNNNNNTTYG	4 cut(s)	460, 492, 860, 892
Asp700I	GAANNNNTTC	1 cut(s)	786
AspLEI	GCGC	2 cut(s)	757, 759
AsuII	TTCGAA	1 cut(s)	858
BanII	GRGCYC	2 cut(s)	378, 420
BbsI	GAAGAC	1 cut(s)	336
Bbv12I	GWGCWC	2 cut(s)	420, 544
BbvI	GCAGC	1 cut(s)	829
BciT130I	CCWGG	1 cut(s)	71
BclI	TGATCA	1 cut(s)	18
BfaI	CTAG	3 cut(s)	41, 173, 809
BfrI	CTTAAG	2 cut(s)	491, 650
BglII	AGATCT	2 cut(s)	604, 646
BisI	GCNGC	2 cut(s)	6, 818
BlsI	GCNGC	2 cut(s)	7, 819
Bme1390I	CCNGG	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	676
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	817
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	609
Bpu14I	TTCGAA	1 cut(s)	858
BpuEI	CTTGAG	8 cut(s)	230, 278, 320, 362, 524, 599, 621, 629
BsaJI	CCNNGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	145, 592
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	2 cut(s)	145, 592
BsePI	GCGCGC	1 cut(s)	755
BseRI	GAGGAG	1 cut(s)	458
BseXI	GCAGC	1 cut(s)	829
Bsh1236I	CGCG	2 cut(s)	113, 757
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	420, 544
BslI	CCNNNNNNNGG	1 cut(s)	76
BsnI	GGCC	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	858
Bsp1286I	GDGCHC	3 cut(s)	378, 420, 544
Bsp143I	GATC	4 cut(s)	18, 297, 604, 646
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	2 cut(s)	4, 448
BspFNI	CGCG	2 cut(s)	113, 757
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	676
BspQI	GCTCTTC	1 cut(s)	408
BspT104I	TTCGAA	1 cut(s)	858
BspTI	CTTAAG	2 cut(s)	491, 650
BsrI	ACTGG	2 cut(s)	145, 592
BssECI	CCNNGG	1 cut(s)	70
BssHII	GCGCGC	1 cut(s)	755
BssMI	GATC	4 cut(s)	18, 297, 604, 646
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	554
Bst6I	CTCTTC	4 cut(s)	335, 377, 408, 530
BstAFI	CTTAAG	2 cut(s)	491, 650
BstBI	TTCGAA	1 cut(s)	858
BstC8I	GCNNGC	1 cut(s)	757
BstDEI	CTNAG	4 cut(s)	12, 286, 435, 620
BstF5I	GGATG	1 cut(s)	523
BstFNI	CGCG	2 cut(s)	113, 757
BstHHI	GCGC	2 cut(s)	757, 759
BstKTI	GATC	4 cut(s)	21, 300, 607, 649
BstMBI	GATC	4 cut(s)	18, 297, 604, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	746
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	69
BstUI	CGCG	2 cut(s)	113, 757
BstV1I	GCAGC	1 cut(s)	829
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	2 cut(s)	604, 646
BstYI	RGATCY	2 cut(s)	604, 646
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	523
BtsIMutI	CAGTG	2 cut(s)	307, 550
Cac8I	GCNNGC	1 cut(s)	757
CciI	TCATGA	1 cut(s)	420
CfoI	GCGC	2 cut(s)	757, 759
CseI	GACGC	1 cut(s)	119
CviAII	CATG	3 cut(s)	421, 545, 741
DdeI	CTNAG	4 cut(s)	12, 286, 435, 620
DpnI	GATC	4 cut(s)	20, 299, 606, 648
DpnII	GATC	4 cut(s)	18, 297, 604, 646
DraIII	CACNNNGTG	2 cut(s)	158, 554
Eam1104I	CTCTTC	4 cut(s)	335, 377, 408, 530
EarI	CTCTTC	4 cut(s)	335, 377, 408, 530
Ecl136II	GAGCTC	1 cut(s)	418
Eco24I	GRGCYC	2 cut(s)	378, 420
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	3 cut(s)	282, 348, 554
EcoICRI	GAGCTC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	69
EcoT38I	GRGCYC	2 cut(s)	378, 420
FaeI	CATG	3 cut(s)	424, 548, 744
FaiI	YATR	7 cut(s)	120, 189, 422, 546, 742, 795, 797
FalI	AAGNNNNNCTT	4 cut(s)	255, 287, 771, 803
FatI	CATG	3 cut(s)	420, 544, 740
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	6, 818
FokI	GGATG	1 cut(s)	530
FriOI	GRGCYC	2 cut(s)	378, 420
Fsp4HI	GCNGC	2 cut(s)	6, 818
FspBI	CTAG	3 cut(s)	41, 173, 809
GlaI	GCGC	2 cut(s)	756, 758
GluI	GCNGC	2 cut(s)	6, 818
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	1 cut(s)	69
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	2 cut(s)	757, 759
Hin1II	CATG	3 cut(s)	424, 548, 744
Hin6I	GCGC	2 cut(s)	755, 757
HinP1I	GCGC	2 cut(s)	755, 757
HincII	GTYRAC	1 cut(s)	868
HindII	GTYRAC	1 cut(s)	868
HindIII	AAGCTT	3 cut(s)	269, 283, 617
Hpy166II	GTNNAC	2 cut(s)	557, 868
Hpy188I	TCNGA	3 cut(s)	109, 438, 534
Hpy188III	TCNNGA	6 cut(s)	295, 337, 379, 421, 503, 608
Hpy8I	GTNNAC	2 cut(s)	557, 868
HpyAV	CCTTC	3 cut(s)	299, 433, 688
HpyCH4III	ACNGT	1 cut(s)	554
HpyCH4V	TGCA	1 cut(s)	548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	746
HpyF3I	CTNAG	4 cut(s)	12, 286, 435, 620
Hsp92II	CATG	3 cut(s)	424, 548, 744
HspAI	GCGC	2 cut(s)	755, 757
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	18, 297, 604, 646
LguI	GCTCTTC	1 cut(s)	408
LmnI	GCTCC	3 cut(s)	445, 590, 674
LpnPI	CCDG	7 cut(s)	56, 62, 81, 83, 126, 138, 573
Lsp1109I	GCAGC	1 cut(s)	829
LweI	GCATC	1 cut(s)	817
MaeI	CTAG	3 cut(s)	41, 173, 809
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	4 cut(s)	20, 299, 606, 648
MboI	GATC	4 cut(s)	18, 297, 604, 646
MboII	GAAGA	8 cut(s)	140, 341, 352, 394, 425, 547, 656, 836
MflI	RGATCY	2 cut(s)	604, 646
MhlI	GDGCHC	3 cut(s)	378, 420, 544
MluCI	AATT	4 cut(s)	145, 245, 454, 731
MluI	ACGCGT	1 cut(s)	111
MnlI	CCTC	8 cut(s)	207, 222, 302, 344, 436, 604, 649, 693
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	6 cut(s)	149, 182, 492, 651, 885, 895
MspCI	CTTAAG	2 cut(s)	491, 650
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	2 cut(s)	113, 757
MwoI	GCNNNNNNNGC	1 cut(s)	746
NdeII	GATC	4 cut(s)	18, 297, 604, 646
NlaIII	CATG	3 cut(s)	424, 548, 744
NlaIV	GGNNCC	1 cut(s)	676
NmeAIII	GCCGAG	1 cut(s)	703
NspI	RCATGY	1 cut(s)	548
NspV	TTCGAA	1 cut(s)	858
PagI	TCATGA	1 cut(s)	420
PauI	GCGCGC	1 cut(s)	755
PciSI	GCTCTTC	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	786
PkrI	GCNGC	2 cut(s)	7, 819
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	676
PsuI	RGATCY	2 cut(s)	604, 646
PteI	GCGCGC	1 cut(s)	755
SacI	GAGCTC	1 cut(s)	420
SapI	GCTCTTC	1 cut(s)	408
SaqAI	TTAA	6 cut(s)	149, 182, 492, 651, 885, 895
SatI	GCNGC	2 cut(s)	6, 818
Sau3AI	GATC	4 cut(s)	18, 297, 604, 646
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	3 cut(s)	378, 420, 544
SfaNI	GCATC	1 cut(s)	817
SfuI	TTCGAA	1 cut(s)	858
Sse9I	AATT	4 cut(s)	145, 245, 454, 731
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	3 cut(s)	41, 173, 809
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	554
TaqI	TCGA	1 cut(s)	858
TasI	AATT	4 cut(s)	145, 245, 454, 731
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	6 cut(s)	149, 182, 492, 651, 885, 895
Tru9I	TTAA	6 cut(s)	149, 182, 492, 651, 885, 895
TscAI	CASTG	2 cut(s)	307, 557
TseI	GCWGC	1 cut(s)	817
TspDTI	ATGAA	5 cut(s)	249, 534, 707, 744, 851
TspRI	CASTG	2 cut(s)	307, 557
Vha464I	CTTAAG	2 cut(s)	491, 650
XapI	RAATTY	2 cut(s)	145, 454
XceI	RCATGY	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	3 cut(s)	41, 173, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.