Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001268.1

Orthogroup ID

OG0005542

Physical Location & Seq

Genomic Coordinates Reverse (-)

35185 .. 40557

Gene Structure 5373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001268.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atgcctgatgcgtttactgatatcgtaaaagtgacgagatcacatataccagctgcaaatgtgcatgcaaggttagaagtccccaacaaggggcacggtgccccagatagaggcactgcaactgcacttagtagaggtgtggttgaggctgtggctccccaaggaagagggggaggtcacttggttcgattgacactcacccaaggaagaagaggtttttcaggtttcaagtctgacgcgtatcatagcccagaagaaatggaaactggaaatttaacacaaagtgtgccaagaagtctaggcttgttaaaatatgtagctcaaaggaaagagcttgagaggatagaagccaagaggaatgaacttacgaaattgtatcatcagactgaagcaaagcttttggctaaaagcttagacctcaagatcagtgaaggaaagctcttggctaaaactgaagacctcaagaagagcgaagcaaatctcttggctaaaaccgaagagctcaagaagagtgtagcagagaacttggctaaaaacgaagagctcatgatcagtgaagctcagaaggaggagctttcaaatttgcttcggcaaagtgaaagtcaaaacaaacaacttaagaaagttcttgagcagattggggatgaagtggaaaatctgaagagagcacatgcacactgtgaacaagtcaaaaagtttgagcttgagcagactggagctgtaaggaaagatcttgaggaaaagcttagacaaagtgaagctcaagtggaagatcttaaggaggcagttggcaagagtggagccgagaaaatagagatgaaggagagggttattttagagcaaaagaaagctgatgaattagtggcatggttagcagaagcgcgcaagaaatgggagagtgaaaaagaaagacttcgctgtataaacaccgaactagcgaagcagcttgaagatgccaagatgaaaagcattgatgatgagttcgaagttgttgacgatgagtttgatgttaaactgatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

340

Amino Acids

38.3

Weight (kDa)

6.33

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06620 FvH4_7g06640 FvH4_7g06640
malus_domestica	MD02G1237600.v1.1
prunus_persica	Prupe.2G094400_v2.0.a1
pyrus_communis	pycom02g20830
rosa_chinensis	RchiOBHm_Chr1g0335321
rosa_laevigata	RLG00000029379 RLG00000029388
rosa_multiflora	Rmu_sc0001268.1_g000007 Rmu_sc0001790.1_g000013 Rmu_sc0003404.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315990 Rroxscaffold_4G00316030
rosa_rugosa	Rorug01G0122000 Rorug01G0122100 Rorug01G0122600 Rorug01G0122700 Rorug01G0122800
rosa_samantha	Rh1AG143300 Rh1AG143600 Rh1BG112200 Rh1BG112600 Rh1CG134900 Rh1CG135200 Rh1DG148900 Rh1DG149300
rosa_wichuraiana	Rw0G009190 Rw0G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	98
AccII	CGCG	2 cut(s)	239, 883
AcsI	RAATTY	2 cut(s)	271, 580
AcuI	CTGAAG	3 cut(s)	408, 474, 680
AdeI	CACNNNGTG	2 cut(s)	284, 680
AfiI	CCNNNNNNNGG	4 cut(s)	88, 89, 90, 110
AflII	CTTAAG	2 cut(s)	617, 776
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	3 cut(s)	229, 579, 950
Alw21I	GWGCWC	3 cut(s)	504, 546, 670
ApeKI	GCWGC	2 cut(s)	53, 943
ApoI	RAATTY	2 cut(s)	271, 580
ArsI	GACNNNNNNTTYG	4 cut(s)	586, 618, 986, 1018
Asp700I	GAANNNNTTC	1 cut(s)	912
AspLEI	GCGC	2 cut(s)	883, 885
AsuHPI	GGTGA	1 cut(s)	190
AsuII	TTCGAA	1 cut(s)	984
BaeGI	GKGCMC	2 cut(s)	96, 103
BanI	GGYRCC	1 cut(s)	98
BanII	GRGCYC	2 cut(s)	504, 546
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	3 cut(s)	504, 546, 670
BbvI	GCAGC	2 cut(s)	40, 955
BclI	TGATCA	1 cut(s)	549
BfaI	CTAG	2 cut(s)	299, 935
BfrI	CTTAAG	2 cut(s)	617, 776
BglII	AGATCT	2 cut(s)	730, 772
BisI	GCNGC	2 cut(s)	54, 944
BlsI	GCNGC	2 cut(s)	55, 945
BmiI	GGNNCC	3 cut(s)	100, 156, 802
BmsI	GCATC	1 cut(s)	943
BpiI	GAAGAC	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	735
Bpu14I	TTCGAA	1 cut(s)	984
BpuEI	CTTGAG	8 cut(s)	356, 404, 446, 488, 650, 725, 747, 755
BsaJI	CCNNGG	2 cut(s)	160, 202
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 89, 90, 110
Bse1I	ACTGG	2 cut(s)	271, 718
BseDI	CCNNGG	2 cut(s)	160, 202
BseGI	GGATG	1 cut(s)	649
BseLI	CCNNNNNNNGG	4 cut(s)	88, 89, 90, 110
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	2 cut(s)	271, 718
BsePI	GCGCGC	1 cut(s)	881
BseRI	GAGGAG	1 cut(s)	584
BseSI	GKGCMC	2 cut(s)	96, 103
BseXI	GCAGC	2 cut(s)	40, 955
BsgI	GTGCAG	1 cut(s)	108
Bsh1236I	CGCG	2 cut(s)	239, 883
BshNI	GGYRCC	1 cut(s)	98
BsiHKAI	GWGCWC	3 cut(s)	504, 546, 670
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	4 cut(s)	88, 89, 90, 110
BsmFI	GGGAC	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	984
Bsp1286I	GDGCHC	5 cut(s)	96, 103, 504, 546, 670
Bsp143I	GATC	5 cut(s)	38, 423, 549, 730, 772
BspCNI	CTCAG	1 cut(s)	574
BspFNI	CGCG	2 cut(s)	239, 883
BspHI	TCATGA	1 cut(s)	546
BspLI	GGNNCC	3 cut(s)	100, 156, 802
BspQI	GCTCTTC	3 cut(s)	461, 492, 534
BspT104I	TTCGAA	1 cut(s)	984
BspT107I	GGYRCC	1 cut(s)	98
BspTI	CTTAAG	2 cut(s)	617, 776
BsrI	ACTGG	2 cut(s)	271, 718
BssECI	CCNNGG	2 cut(s)	160, 202
BssHII	GCGCGC	1 cut(s)	881
BssMI	GATC	5 cut(s)	38, 423, 549, 730, 772
BssT1I	CCWWGG	2 cut(s)	160, 202
Bst4CI	ACNGT	2 cut(s)	98, 680
Bst6I	CTCTTC	7 cut(s)	160, 205, 461, 492, 503, 534, 656
BstAFI	CTTAAG	2 cut(s)	617, 776
BstBI	TTCGAA	1 cut(s)	984
BstC8I	GCNNGC	2 cut(s)	66, 883
BstDEI	CTNAG	4 cut(s)	128, 412, 561, 746
BstF5I	GGATG	1 cut(s)	649
BstFNI	CGCG	2 cut(s)	239, 883
BstHHI	GCGC	2 cut(s)	883, 885
BstKTI	GATC	5 cut(s)	41, 426, 552, 733, 775
BstMBI	GATC	5 cut(s)	38, 423, 549, 730, 772
BstMWI	GCNNNNNNNGC	1 cut(s)	872
BstNSI	RCATGY	2 cut(s)	68, 674
BstSLI	GKGCMC	2 cut(s)	96, 103
BstUI	CGCG	2 cut(s)	239, 883
BstV1I	GCAGC	2 cut(s)	40, 955
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	2 cut(s)	730, 772
BstYI	RGATCY	2 cut(s)	730, 772
BtsCI	GGATG	1 cut(s)	649
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	4 cut(s)	114, 433, 559, 676
Cac8I	GCNNGC	2 cut(s)	66, 883
CciI	TCATGA	1 cut(s)	546
CfoI	GCGC	2 cut(s)	883, 885
CseI	GACGC	1 cut(s)	245
CviAII	CATG	4 cut(s)	65, 547, 671, 867
DdeI	CTNAG	4 cut(s)	128, 412, 561, 746
DpnI	GATC	5 cut(s)	40, 425, 551, 732, 774
DpnII	GATC	5 cut(s)	38, 423, 549, 730, 772
DraIII	CACNNNGTG	2 cut(s)	284, 680
Eam1104I	CTCTTC	7 cut(s)	160, 205, 461, 492, 503, 534, 656
EarI	CTCTTC	7 cut(s)	160, 205, 461, 492, 503, 534, 656
Ecl136II	GAGCTC	2 cut(s)	502, 544
Eco130I	CCWWGG	2 cut(s)	160, 202
Eco24I	GRGCYC	2 cut(s)	504, 546
Eco32I	GATATC	1 cut(s)	22
Eco53kI	GAGCTC	2 cut(s)	502, 544
Eco57I	CTGAAG	3 cut(s)	408, 474, 680
EcoICRI	GAGCTC	2 cut(s)	502, 544
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	160, 202
EcoT38I	GRGCYC	2 cut(s)	504, 546
ErhI	CCWWGG	2 cut(s)	160, 202
FaeI	CATG	4 cut(s)	68, 550, 674, 870
FaiI	YATR	9 cut(s)	45, 47, 66, 246, 315, 548, 672, 868, 923
FalI	AAGNNNNNCTT	4 cut(s)	381, 413, 897, 929
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	4 cut(s)	64, 546, 670, 866
FbaI	TGATCA	1 cut(s)	549
Fnu4HI	GCNGC	2 cut(s)	54, 944
FokI	GGATG	1 cut(s)	656
FriOI	GRGCYC	2 cut(s)	504, 546
Fsp4HI	GCNGC	2 cut(s)	54, 944
FspBI	CTAG	2 cut(s)	299, 935
GlaI	GCGC	2 cut(s)	882, 884
GluI	GCNGC	2 cut(s)	54, 944
GsuI	CTGGAG	1 cut(s)	735
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	2 cut(s)	883, 885
Hin1II	CATG	4 cut(s)	68, 550, 674, 870
Hin6I	GCGC	2 cut(s)	881, 883
HinP1I	GCGC	2 cut(s)	881, 883
HincII	GTYRAC	1 cut(s)	994
HindII	GTYRAC	1 cut(s)	994
HindIII	AAGCTT	3 cut(s)	395, 409, 743
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	15, 683, 994
Hpy188I	TCNGA	4 cut(s)	235, 384, 564, 660
Hpy188III	TCNNGA	6 cut(s)	421, 463, 505, 547, 629, 734
Hpy8I	GTNNAC	3 cut(s)	15, 683, 994
HpyAV	CCTTC	3 cut(s)	425, 559, 814
HpyCH4III	ACNGT	2 cut(s)	98, 680
HpyCH4V	TGCA	6 cut(s)	56, 64, 68, 119, 125, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	872
HpyF3I	CTNAG	4 cut(s)	128, 412, 561, 746
Hsp92II	CATG	4 cut(s)	68, 550, 674, 870
HspAI	GCGC	2 cut(s)	881, 883
Ksp22I	TGATCA	1 cut(s)	549
Kzo9I	GATC	5 cut(s)	38, 423, 549, 730, 772
LguI	GCTCTTC	3 cut(s)	461, 492, 534
LmnI	GCTCC	4 cut(s)	160, 571, 716, 800
LpnPI	CCDG	7 cut(s)	18, 63, 117, 207, 252, 264, 699
Lsp1109I	GCAGC	2 cut(s)	40, 955
LweI	GCATC	1 cut(s)	943
MaeI	CTAG	2 cut(s)	299, 935
MaeIII	GTNAC	2 cut(s)	31, 176
MalI	GATC	5 cut(s)	40, 425, 551, 732, 774
MboI	GATC	5 cut(s)	38, 423, 549, 730, 772
MflI	RGATCY	2 cut(s)	730, 772
MhlI	GDGCHC	5 cut(s)	96, 103, 504, 546, 670
MluCI	AATT	4 cut(s)	271, 371, 580, 857
MluI	ACGCGT	1 cut(s)	237
MroXI	GAANNNNTTC	1 cut(s)	912
MseI	TTAA	6 cut(s)	275, 308, 618, 777, 1011, 1021
MspA1I	CMGCKG	1 cut(s)	53
MspCI	CTTAAG	2 cut(s)	617, 776
MvnI	CGCG	2 cut(s)	239, 883
MwoI	GCNNNNNNNGC	1 cut(s)	872
NdeII	GATC	5 cut(s)	38, 423, 549, 730, 772
NlaIII	CATG	4 cut(s)	68, 550, 674, 870
NlaIV	GGNNCC	3 cut(s)	100, 156, 802
NmeAIII	GCCGAG	1 cut(s)	829
NmuCI	GTSAC	2 cut(s)	31, 176
NspI	RCATGY	2 cut(s)	68, 674
NspV	TTCGAA	1 cut(s)	984
PaeI	GCATGC	1 cut(s)	68
PagI	TCATGA	1 cut(s)	546
PauI	GCGCGC	1 cut(s)	881
PciSI	GCTCTTC	3 cut(s)	461, 492, 534
PdmI	GAANNNNTTC	1 cut(s)	912
PkrI	GCNGC	2 cut(s)	55, 945
Psp124BI	GAGCTC	2 cut(s)	504, 546
PspN4I	GGNNCC	3 cut(s)	100, 156, 802
PsuI	RGATCY	2 cut(s)	730, 772
PteI	GCGCGC	1 cut(s)	881
PvuII	CAGCTG	1 cut(s)	53
SacI	GAGCTC	2 cut(s)	504, 546
SapI	GCTCTTC	3 cut(s)	461, 492, 534
SaqAI	TTAA	6 cut(s)	275, 308, 618, 777, 1011, 1021
SatI	GCNGC	2 cut(s)	54, 944
Sau3AI	GATC	5 cut(s)	38, 423, 549, 730, 772
SduI	GDGCHC	5 cut(s)	96, 103, 504, 546, 670
SfaNI	GCATC	1 cut(s)	943
SfuI	TTCGAA	1 cut(s)	984
SphI	GCATGC	1 cut(s)	68
Sse9I	AATT	4 cut(s)	271, 371, 580, 857
SspMI	CTAG	2 cut(s)	299, 935
SstI	GAGCTC	2 cut(s)	504, 546
StyI	CCWWGG	2 cut(s)	160, 202
TaaI	ACNGT	2 cut(s)	98, 680
TaqI	TCGA	2 cut(s)	187, 984
TasI	AATT	4 cut(s)	271, 371, 580, 857
Tru1I	TTAA	6 cut(s)	275, 308, 618, 777, 1011, 1021
Tru9I	TTAA	6 cut(s)	275, 308, 618, 777, 1011, 1021
TscAI	CASTG	4 cut(s)	121, 433, 559, 683
TseFI	GTSAC	2 cut(s)	31, 176
TseI	GCWGC	2 cut(s)	53, 943
Tsp45I	GTSAC	2 cut(s)	31, 176
TspDTI	ATGAA	5 cut(s)	375, 660, 833, 870, 977
TspRI	CASTG	4 cut(s)	121, 433, 559, 683
Vha464I	CTTAAG	2 cut(s)	617, 776
XapI	RAATTY	2 cut(s)	271, 580
XceI	RCATGY	2 cut(s)	68, 674
XmnI	GAANNNNTTC	1 cut(s)	912
XspI	CTAG	2 cut(s)	299, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.