Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005542

Physical Location & Seq

Genomic Coordinates Reverse (-)

21158900 .. 21159421

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0122100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCGGAGGTGCCAAGTGTTTCTACGCGGTATTATGGGCTGGAAGATGGTGAGCACATCAAAGGTTTGTGTTGGAGATGCGTTGGAATTTATTGATAAACTTGCTGGTGCCTGCGAGGTAGAGGTTGGTTGTGACGTGCGCAGAGGCAATGATGTTAATACTGAGTTTGATGTGATTATGGTTGATTTGGATTCAAGTGATGCTAGGGATGGTCTAATTGCTCCACCGTTGGAGTCTGTTAGGAAGCATGTCCTTTTGTCAGCCAGATCAATTCTCTCTGATAATGGAATCCTAGCTATAAATGTGATTCCTCCAAGTACATCATTTTACAAGACATTGGTCCCCGAGTTTCAAGATGTTTTTAATGACTTATACGAAATAGATGTGGGAAATGGGGAAAATTTTATTCTTATTGCTGTGGCATCGCCTCTCATGCCTTCTAGTGATTTTGAGAACTGTTTCCTCAACAAACTAGGAAACGCTATATCAGGGGCATACTTGAATTCCATAAAGAAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.94

Weight (kDa)

4.68

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06620 FvH4_7g06640 FvH4_7g06640
malus_domestica	MD02G1237600.v1.1
prunus_persica	Prupe.2G094400_v2.0.a1
pyrus_communis	pycom02g20830
rosa_chinensis	RchiOBHm_Chr1g0335321
rosa_laevigata	RLG00000029379 RLG00000029388
rosa_multiflora	Rmu_sc0001268.1_g000007 Rmu_sc0001790.1_g000013 Rmu_sc0003404.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315990 Rroxscaffold_4G00316030
rosa_rugosa	Rorug01G0122000 Rorug01G0122100 Rorug01G0122600 Rorug01G0122700 Rorug01G0122800
rosa_samantha	Rh1AG143300 Rh1AG143600 Rh1BG112200 Rh1BG112600 Rh1CG134900 Rh1CG135200 Rh1DG148900 Rh1DG149300
rosa_wichuraiana	Rw0G009190 Rw0G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	140
AccB1I	GGYRCC	2 cut(s)	9, 107
AccII	CGCG	1 cut(s)	27
AciI	CCGC	2 cut(s)	4, 27
AcsI	RAATTY	3 cut(s)	86, 400, 502
AfaI	GTAC	1 cut(s)	319
AgsI	TTSAA	3 cut(s)	195, 353, 502
AjiI	CACGTC	1 cut(s)	136
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw21I	GWGCWC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	344
ApoI	RAATTY	3 cut(s)	86, 400, 502
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	340
BanI	GGYRCC	2 cut(s)	9, 107
Bbv12I	GWGCWC	1 cut(s)	56
BccI	CCATC	2 cut(s)	40, 203
BfaI	CTAG	4 cut(s)	204, 293, 441, 473
BglII	AGATCT	1 cut(s)	516
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	344
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	3 cut(s)	11, 109, 342
BmsI	GCATC	3 cut(s)	67, 190, 431
BoxI	GACNNNNGTC	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	27
BshNI	GGYRCC	2 cut(s)	9, 107
BsiHKAI	GWGCWC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	266, 516
BspACI	CCGC	2 cut(s)	4, 27
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	3 cut(s)	11, 109, 342
BspT107I	GGYRCC	2 cut(s)	9, 107
BsrDI	GCAATG	1 cut(s)	154
BssMI	GATC	2 cut(s)	266, 516
Bst4CI	ACNGT	2 cut(s)	228, 458
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	269, 519
BstMBI	GATC	2 cut(s)	266, 516
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstNSI	RCATGY	1 cut(s)	251
BstPAI	GACNNNNGTC	1 cut(s)	338
BstUI	CGCG	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	516
BstYI	RGATCY	1 cut(s)	516
BtgZI	GCGATG	1 cut(s)	408
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	112
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	2 cut(s)	248, 433
CviJI	RGCY	3 cut(s)	39, 263, 296
CviKI_1	RGCY	3 cut(s)	39, 263, 296
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	2 cut(s)	268, 518
DpnII	GATC	2 cut(s)	266, 516
Eco47I	GGWCC	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	344
EcoRI	GAATTC	1 cut(s)	502
FaeI	CATG	2 cut(s)	251, 436
FaiI	YATR	9 cut(s)	35, 179, 249, 299, 373, 434, 485, 496, 509
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	2 cut(s)	247, 432
FokI	GGATG	1 cut(s)	221
FspBI	CTAG	4 cut(s)	204, 293, 441, 473
FspI	TGCGCA	1 cut(s)	140
GlaI	GCGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	251, 436
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	4 cut(s)	191, 233, 288, 307
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	1 cut(s)	353
HpyAV	CCTTC	1 cut(s)	447
HpyCH4III	ACNGT	2 cut(s)	228, 458
HpyCH4IV	ACGT	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	251, 436
HspAI	GCGC	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	266, 516
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	5 cut(s)	25, 90, 124, 277, 474
LweI	GCATC	3 cut(s)	67, 190, 431
MaeI	CTAG	4 cut(s)	204, 293, 441, 473
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	2 cut(s)	268, 518
MboI	GATC	2 cut(s)	266, 516
MboII	GAAGA	1 cut(s)	55
MflI	RGATCY	1 cut(s)	516
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	5 cut(s)	86, 216, 270, 400, 502
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	3 cut(s)	52, 63, 210
MnlI	CCTC	6 cut(s)	109, 115, 137, 321, 438, 473
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	2 cut(s)	156, 363
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	433
NdeII	GATC	2 cut(s)	266, 516
NlaIII	CATG	2 cut(s)	251, 436
NlaIV	GGNNCC	3 cut(s)	11, 109, 342
NmuCI	GTSAC	1 cut(s)	131
NsbI	TGCGCA	1 cut(s)	140
NspI	RCATGY	1 cut(s)	251
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	3 cut(s)	191, 288, 307
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PshAI	GACNNNNGTC	1 cut(s)	338
PspN4I	GGNNCC	3 cut(s)	11, 109, 342
PspPI	GGNCC	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	516
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	156, 363
Sau3AI	GATC	2 cut(s)	266, 516
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	6 cut(s)	11, 66, 120, 126, 138, 298
SfaNI	GCATC	3 cut(s)	67, 190, 431
SinI	GGWCC	1 cut(s)	340
Sse9I	AATT	5 cut(s)	86, 216, 270, 400, 502
SsiI	CCGC	2 cut(s)	4, 27
SspMI	CTAG	4 cut(s)	204, 293, 441, 473
TaaI	ACNGT	2 cut(s)	228, 458
TaiI	ACGT	1 cut(s)	138
TasI	AATT	5 cut(s)	86, 216, 270, 400, 502
TatI	WGTACW	1 cut(s)	317
TfiI	GAWTC	3 cut(s)	191, 288, 307
Tru1I	TTAA	2 cut(s)	156, 363
Tru9I	TTAA	2 cut(s)	156, 363
TseFI	GTSAC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	3 cut(s)	86, 400, 502
XceI	RCATGY	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	4 cut(s)	204, 293, 441, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.