Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002683

Physical Location & Seq

Genomic Coordinates Reverse (-)

31262900 .. 31263463

Gene Structure 564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1259100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAGCCCCGGAAGCTGATTGTGTTACTGTTATGTTGCCTTGGTGTTTTCATGTCTGCGAATTCTGATCTGGCTTCCGACAAAAGTGCCTGGCTGGCGCTCAGAACCGCCGTGGGAGGTCGTACAATGGGCTGGAACATGACGGAGACCAACCCCTGTTCGTGGCTCGGCGTCAAATGCGAGTCGAACCGGGTCACCGAGTTACGGCTTCTGGGTTGGGCAATAGTTGGGCAGCTTCCTTTGGGTCTCGGAAACTTAACCCAGCTTTTGACCCTCTTTCTGCGCGTAAACGCGCTCTCCGGTCCACTACCGAACGACCTTGTCAACCTAGTCAACCTCAAGAATCTCTACTTGCAAGGTAACTCGTTTTCCAGTCCAATTCCTGAGTTTTTGTTCAAATTGAAAAGCCTTATGAGATTGAACCTTGAGAAAAATAAATTCTCCCGTGAAATCTCGTCGGCATTTAATAATTTGACGAGTTTGGTAAGTCTGCATTTGGAGGTGAATCAACTTACTAGGTTAATTCCTGAGCTGGGTTTGCCCACAAGTCTTCGCCTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097305 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

188

Amino Acids

20.76

Weight (kDa)

9.74

Isoelectric Point (pI)

27.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	25 - 60	7.9e-07	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48480
fragaria_vesca	FvH4_2g12190 FvH4_2g12190 FvH4_5g17570
malus_domestica	MD02G1259100.v1.1 MD06G1231600.v1.1 MD09G1086600.v1.1 MD09G1271200.v1.1 MD14G1238300.v1.1 MD17G1269300.v1.1
prunus_persica	Prupe.3G017300_v2.0.a1 Prupe.5G235500_v2.0.a1
pyrus_communis	pycom06g20550 pycom09g18220 pycom14g19950 pycom17g26800
rosa_chinensis	RchiOBHm_Chr3g0491091 RchiOBHm_Chr7g0178081
rosa_laevigata	RLG00000005473 RLG00000022865
rosa_multiflora	Rmu_co8170494.1_g000001 Rmu_co8379533.1_g000001 Rmu_co8445967.1_g000001 Rmu_sc0000425.1_g000007 Rmu_sc0005038.1_g000014 Rmu_ssc0000386.1_g000061 Rmu_ssc0000386.1_g000063
rosa_roxburghii	Rroxscaffold_6G00393220
rosa_rugosa	Rorug03G0246000 Rorug06G0413300
rosa_samantha	Rh3AG296200 Rh3BG332200 Rh3CG329300 Rh3DG329900 Rh7AG012600 Rh7BG012500 Rh7CG012500 Rh7DG012800
rosa_wichuraiana	Rw3G026140 Rw7G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	285, 293
AciI	CCGC	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	61, 437
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	3 cut(s)	162, 204, 533
AgsI	TTSAA	3 cut(s)	397, 403, 421
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	4 cut(s)	16, 235, 265, 532
AluI	AGCT	4 cut(s)	16, 235, 265, 532
Alw26I	GTCTC	2 cut(s)	140, 251
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	2 cut(s)	61, 437
AspLEI	GCGC	3 cut(s)	100, 285, 295
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	2 cut(s)	10, 191
AsuHPI	GGTGA	2 cut(s)	187, 514
AvaII	GGWCC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	542
BbvI	GCAGC	1 cut(s)	244
BceAI	ACGGC	2 cut(s)	95, 221
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	1 cut(s)	91
BcnI	CCSGG	2 cut(s)	10, 191
BcoDI	GTCTC	2 cut(s)	140, 251
BfaI	CTAG	3 cut(s)	329, 516, 562
BfoI	RGCGCY	1 cut(s)	101
BglI	GCCNNNNNGGC	1 cut(s)	95
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme1390I	CCNGG	3 cut(s)	10, 91, 191
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmrFI	CCNGG	3 cut(s)	10, 91, 191
BpiI	GAAGAC	1 cut(s)	542
Bpu10I	CCTNAGC	1 cut(s)	528
BpuEI	CTTGAG	2 cut(s)	323, 446
BpuMI	CCSGG	2 cut(s)	10, 191
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	2 cut(s)	140, 251
BsaJI	CCNNGG	3 cut(s)	8, 40, 111
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 204, 533
Bse1I	ACTGG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	3 cut(s)	8, 40, 111
BseLI	CCNNNNNNNGG	3 cut(s)	162, 204, 533
BseMII	CTCAG	3 cut(s)	115, 375, 519
BseNI	ACTGG	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	2 cut(s)	261, 532
BsgI	GTGCAG	1 cut(s)	542
Bsh1236I	CGCG	2 cut(s)	285, 293
BsiSI	CCGG	3 cut(s)	10, 190, 300
BslI	CCNNNNNNNGG	3 cut(s)	162, 204, 533
BsmAI	GTCTC	2 cut(s)	140, 251
Bso31I	GGTCTC	2 cut(s)	140, 251
Bsp143I	GATC	1 cut(s)	67
BspACI	CCGC	1 cut(s)	108
BspCNI	CTCAG	3 cut(s)	114, 376, 520
BspFNI	CGCG	2 cut(s)	285, 293
BspTNI	GGTCTC	2 cut(s)	140, 251
BsrI	ACTGG	1 cut(s)	372
BssECI	CCNNGG	3 cut(s)	8, 40, 111
BssMI	GATC	1 cut(s)	67
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	96, 557
BstDEI	CTNAG	3 cut(s)	101, 384, 528
BstDSI	CCRYGG	1 cut(s)	111
BstEII	GGTNACC	1 cut(s)	193
BstFNI	CGCG	2 cut(s)	285, 293
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	3 cut(s)	100, 285, 295
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	2 cut(s)	140, 251
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 95, 177, 538
BstNI	CCWGG	1 cut(s)	91
BstPI	GGTNACC	1 cut(s)	193
BstSCI	CCNGG	3 cut(s)	8, 89, 189
BstUI	CGCG	2 cut(s)	285, 293
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	542
BtgI	CCRYGG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	96, 557
CfoI	GCGC	3 cut(s)	100, 285, 295
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	2 cut(s)	52, 139
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	3 cut(s)	101, 384, 528
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	40
Eco31I	GGTCTC	2 cut(s)	140, 251
Eco47I	GGWCC	1 cut(s)	302
Eco91I	GGTNACC	1 cut(s)	193
EcoO65I	GGTNACC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	2 cut(s)	55, 142
FaiI	YATR	4 cut(s)	34, 53, 140, 413
FatI	CATG	2 cut(s)	51, 138
Fnu4HI	GCNGC	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	3 cut(s)	329, 516, 562
GlaI	GCGC	3 cut(s)	99, 284, 294
GluI	GCNGC	1 cut(s)	233
GsaI	CCCAGC	2 cut(s)	265, 536
HaeII	RGCGCY	1 cut(s)	101
HapII	CCGG	3 cut(s)	10, 190, 300
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	3 cut(s)	100, 285, 295
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	55, 142
Hin6I	GCGC	3 cut(s)	98, 283, 293
HinP1I	GCGC	3 cut(s)	98, 283, 293
HincII	GTYRAC	2 cut(s)	325, 334
HindII	GTYRAC	2 cut(s)	325, 334
HinfI	GANTC	3 cut(s)	182, 343, 505
HpaII	CCGG	3 cut(s)	10, 190, 300
HphI	GGTGA	2 cut(s)	187, 514
Hpy166II	GTNNAC	4 cut(s)	289, 305, 325, 334
Hpy188I	TCNGA	4 cut(s)	67, 79, 104, 251
Hpy188III	TCNNGA	3 cut(s)	340, 383, 527
Hpy8I	GTNNAC	4 cut(s)	289, 305, 325, 334
Hpy99I	CGWCG	1 cut(s)	460
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	3 cut(s)	355, 493, 559
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 95, 177, 538
HpyF3I	CTNAG	3 cut(s)	101, 384, 528
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	55, 142
HspAI	GCGC	3 cut(s)	98, 283, 293
Kzo9I	GATC	1 cut(s)	67
Lsp1109I	GCAGC	1 cut(s)	244
MaeI	CTAG	3 cut(s)	329, 516, 562
MaeIII	GTNAC	4 cut(s)	24, 193, 201, 359
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	542
MluCI	AATT	6 cut(s)	61, 378, 398, 437, 469, 522
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	110, 284, 347, 493
MseI	TTAA	3 cut(s)	257, 465, 521
MspI	CCGG	3 cut(s)	10, 190, 300
MspR9I	CCNGG	3 cut(s)	10, 91, 191
MvaI	CCWGG	1 cut(s)	91
MvnI	CGCG	2 cut(s)	285, 293
MwoI	GCNNNNNNNGC	4 cut(s)	13, 95, 177, 538
NciI	CCSGG	2 cut(s)	10, 191
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	55, 142
NmeAIII	GCCGAG	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	343, 505
PflFI	GACNNNGTC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	234
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	89
PspEI	GGTNACC	1 cut(s)	193
PspFI	CCCAGC	2 cut(s)	261, 532
PspGI	CCWGG	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	302
PsyI	GACNNNGTC	1 cut(s)	320
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SaqAI	TTAA	3 cut(s)	257, 465, 521
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	3 cut(s)	10, 91, 191
SinI	GGWCC	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	338, 425
SmoI	CTYRAG	2 cut(s)	338, 425
Sse9I	AATT	6 cut(s)	61, 378, 398, 437, 469, 522
SsiI	CCGC	1 cut(s)	108
SspMI	CTAG	3 cut(s)	329, 516, 562
StyD4I	CCNGG	3 cut(s)	8, 89, 189
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	185
TasI	AATT	6 cut(s)	61, 378, 398, 437, 469, 522
TfiI	GAWTC	2 cut(s)	343, 505
Tru1I	TTAA	3 cut(s)	257, 465, 521
Tru9I	TTAA	3 cut(s)	257, 465, 521
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	17, 40
TspGWI	ACGGA	1 cut(s)	158
Tth111I	GACNNNGTC	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	2 cut(s)	61, 437
XspI	CTAG	3 cut(s)	329, 516, 562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.