Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002683

Physical Location & Seq

Genomic Coordinates Forward (+)

6213480 .. 6216670

Gene Structure 3191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1086600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAAGCCCCTGAAGCTGATTTCGTTACTGGTATGTTGGCTTGGTGATTTCCTGACTGCGAATTCTGATCTGGCGTCCCTCAGAGAGGCCTTGCTGGTGCTCAGGACCGCTGTGAGAGGCCGTACAATGGGGTGGAACGTGACGGAGACCAACACTTGTTCATGGCTCAGCGTCAAACGTGAGTTGGAACGAGTCATCAAGTTGAGGCATTCGGGTCAGGCACTCGTCGGGAAGAAGCTCCATCTGGGCCTCGGGAACTTGACACAGCTCTTGAGCCTTTCTCTGCGCGTAAATACGCTCTCCGGTCCACTCCCTATCAACCTTGTCAACCTAGTCAACCTTCAGAGTCTCTACTTGCAAAGACTCAGAGCGGATGGAAAGGATTTGCAGTTGCTCATAATCTTGTGGATTGAGATGCATTGTTTTTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097305 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

145

Amino Acids

16.27

Weight (kDa)

10.11

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48480
fragaria_vesca	FvH4_2g12190 FvH4_2g12190 FvH4_5g17570
malus_domestica	MD02G1259100.v1.1 MD06G1231600.v1.1 MD09G1086600.v1.1 MD09G1271200.v1.1 MD14G1238300.v1.1 MD17G1269300.v1.1
prunus_persica	Prupe.3G017300_v2.0.a1 Prupe.5G235500_v2.0.a1
pyrus_communis	pycom06g20550 pycom09g18220 pycom14g19950 pycom17g26800
rosa_chinensis	RchiOBHm_Chr3g0491091 RchiOBHm_Chr7g0178081
rosa_laevigata	RLG00000005473 RLG00000022865
rosa_multiflora	Rmu_co8170494.1_g000001 Rmu_co8379533.1_g000001 Rmu_co8445967.1_g000001 Rmu_sc0000425.1_g000007 Rmu_sc0005038.1_g000014 Rmu_ssc0000386.1_g000061 Rmu_ssc0000386.1_g000063
rosa_roxburghii	Rroxscaffold_6G00393220
rosa_rugosa	Rorug03G0246000 Rorug06G0413300
rosa_samantha	Rh3AG296200 Rh3BG332200 Rh3CG329300 Rh3DG329900 Rh7AG012600 Rh7BG012500 Rh7CG012500 Rh7DG012800
rosa_wichuraiana	Rw3G026140 Rw7G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	371
AccII	CGCG	1 cut(s)	288
AciI	CCGC	2 cut(s)	108, 371
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	2 cut(s)	32, 326
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	85, 127
AgsI	TTSAA	1 cut(s)	430
AluBI	AGCT	3 cut(s)	16, 238, 268
AluI	AGCT	3 cut(s)	16, 238, 268
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	140, 353
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	3 cut(s)	87, 118, 247
ApoI	RAATTY	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	3 cut(s)	105, 247, 305
AsuHPI	GGTGA	1 cut(s)	56
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	2 cut(s)	105, 305
Bbv12I	GWGCWC	1 cut(s)	102
BccI	CCATC	2 cut(s)	249, 368
BceAI	ACGGC	1 cut(s)	105
BcoDI	GTCTC	2 cut(s)	140, 353
BfaI	CTAG	1 cut(s)	332
BlpI	GCTNAGC	1 cut(s)	167
Bme18I	GGWCC	2 cut(s)	105, 305
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	3 cut(s)	105, 247, 305
BmsI	GCATC	1 cut(s)	405
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 127
Bse1I	ACTGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	85, 127
BseMII	CTCAG	4 cut(s)	94, 115, 181, 379
BseNI	ACTGG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	89, 120, 249
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	85, 127
BsmAI	GTCTC	2 cut(s)	140, 353
BsmFI	GGGAC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	3 cut(s)	89, 120, 249
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	67
Bsp1720I	GCTNAGC	1 cut(s)	167
BspACI	CCGC	2 cut(s)	108, 371
BspANI	GGCC	3 cut(s)	89, 120, 249
BspCNI	CTCAG	4 cut(s)	93, 114, 180, 378
BspFNI	CGCG	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	67
BssNI	GRCGYC	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	74
BstDEI	CTNAG	4 cut(s)	80, 101, 167, 365
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	379
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	2 cut(s)	140, 353
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstUI	CGCG	1 cut(s)	288
BsuRI	GGCC	3 cut(s)	89, 120, 249
BtsCI	GGATG	1 cut(s)	379
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	3 cut(s)	105, 247, 305
CseI	GACGC	2 cut(s)	63, 160
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	1 cut(s)	162
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	4 cut(s)	80, 101, 167, 365
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Eco147I	AGGCCT	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	2 cut(s)	105, 305
Eco57I	CTGAAG	2 cut(s)	32, 326
Eco88I	CYCGRG	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoRI	GAATTC	1 cut(s)	61
EcoT22I	ATGCAT	1 cut(s)	420
FaeI	CATG	1 cut(s)	165
FaiI	YATR	3 cut(s)	34, 163, 398
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	161
FokI	GGATG	1 cut(s)	386
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	287
HaeIII	GGCC	3 cut(s)	89, 120, 249
HapII	CCGG	1 cut(s)	303
HgaI	GACGC	2 cut(s)	63, 160
HhaI	GCGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	2 cut(s)	328, 337
HindII	GTYRAC	2 cut(s)	328, 337
HinfI	GANTC	3 cut(s)	192, 346, 363
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	3 cut(s)	308, 328, 337
Hpy188I	TCNGA	4 cut(s)	67, 83, 345, 368
Hpy188III	TCNNGA	5 cut(s)	52, 103, 229, 253, 271
Hpy8I	GTNNAC	3 cut(s)	308, 328, 337
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	350
HpyCH4IV	ACGT	2 cut(s)	138, 178
HpyCH4V	TGCA	3 cut(s)	358, 388, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	4 cut(s)	80, 101, 167, 365
HpySE526I	ACGT	2 cut(s)	138, 178
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	165
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	1 cut(s)	243
LpnPI	CCDG	9 cut(s)	14, 23, 56, 65, 80, 88, 203, 230, 316
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	2 cut(s)	138, 178
MaeIII	GTNAC	2 cut(s)	24, 139
MalI	GATC	1 cut(s)	69
MbiI	CCGCTC	1 cut(s)	371
MboI	GATC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	1 cut(s)	61
MlyI	GAGTC	3 cut(s)	201, 355, 357
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	5 cut(s)	79, 89, 110, 198, 260
Mph1103I	ATGCAT	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	208
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	13
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	139
NsiI	ATGCAT	1 cut(s)	420
PceI	AGGCCT	1 cut(s)	89
PctI	GAATGC	1 cut(s)	208
PleI	GAGTC	3 cut(s)	200, 354, 357
PpsI	GAGTC	3 cut(s)	200, 354, 357
PspPI	GGNCC	3 cut(s)	105, 247, 305
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	3 cut(s)	105, 247, 305
SchI	GAGTC	3 cut(s)	201, 355, 357
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	8 cut(s)	18, 141, 181, 240, 270, 324, 333, 342
SfaNI	GCATC	1 cut(s)	405
SinI	GGWCC	2 cut(s)	105, 305
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	1 cut(s)	61
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	2 cut(s)	108, 371
SspMI	CTAG	1 cut(s)	332
StuI	AGGCCT	1 cut(s)	89
TaiI	ACGT	2 cut(s)	141, 181
TasI	AATT	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	17, 150
TspGWI	ACGGA	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	105, 305
XagI	CCTNNNNNAGG	1 cut(s)	83
XapI	RAATTY	1 cut(s)	61
XspI	CTAG	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.