Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000386.1

Orthogroup ID

OG0002683

Physical Location & Seq

Genomic Coordinates Reverse (-)

327533 .. 328429

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000386.1_g000063.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atgaagcctccaaaaccggccttcacgactactgtcttggtggtggtgttgtgtacttgtctcagcttggccgccagctacgatctggcttccgacagacaggctctgttgagtttccgagctagcgttggaggccgctcgacgttttggaatgtgatggagaccaacccgtgttcctggactggtgtgacgtgcgtgtcggaccgagtcactgagttacgcgttcccggttggggactccatggcccgctgcctctcggtctcggcaacttgaccaaactccaagccctgtctctccgcaaaaacgcgcttgacggcccgatacctcccgactttgttaacctcgtcaatctgcagaacctctacttgacagctaacaggttttcgggtccaattcctgactttatcttcggtttgcagagcctggagaggttggatgtctctcagaataagttttccggtgaaatttcgaccgggtttaataatttgacgaacttggtgtccctgcatttggaggagaaccagcttaatgggtcaatcccggagttggatatgccggctcttcgacagttcaatgtatcttataaccggctaaacgggtcggtacccgcaaagctttcaggctgggaggtgggtgcctttgcagggaacttgcagctgtgcgggaagccgatgacggcttgtaatgggactgagattgggagtgggagtgggagtgggagtaagaagaagttgtcaggtggagcaattgcagggatcgtgataggttgcgtaattggattttttatcattgttgccattttgtactttttgtgtggaagaaagaaaaatggggaaaagggtgctaattatgttgcgccgcggagttttcccgcggttgaagtcccaatcccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097305 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

298

Amino Acids

31.76

Weight (kDa)

8.92

Isoelectric Point (pI)

29.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48480
fragaria_vesca	FvH4_2g12190 FvH4_2g12190 FvH4_5g17570
malus_domestica	MD02G1259100.v1.1 MD06G1231600.v1.1 MD09G1086600.v1.1 MD09G1271200.v1.1 MD14G1238300.v1.1 MD17G1269300.v1.1
prunus_persica	Prupe.3G017300_v2.0.a1 Prupe.5G235500_v2.0.a1
pyrus_communis	pycom06g20550 pycom09g18220 pycom14g19950 pycom17g26800
rosa_chinensis	RchiOBHm_Chr3g0491091 RchiOBHm_Chr7g0178081
rosa_laevigata	RLG00000005473 RLG00000022865
rosa_multiflora	Rmu_co8170494.1_g000001 Rmu_co8379533.1_g000001 Rmu_co8445967.1_g000001 Rmu_sc0000425.1_g000007 Rmu_sc0005038.1_g000014 Rmu_ssc0000386.1_g000061 Rmu_ssc0000386.1_g000063
rosa_roxburghii	Rroxscaffold_6G00393220
rosa_rugosa	Rorug03G0246000 Rorug06G0413300
rosa_samantha	Rh3AG296200 Rh3BG332200 Rh3CG329300 Rh3DG329900 Rh7AG012600 Rh7BG012500 Rh7CG012500 Rh7DG012800
rosa_wichuraiana	Rw3G026140 Rw7G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
AasI	GACNNNNNNGTC	1 cut(s)	196
Acc65I	GGTACC	1 cut(s)	604
AccB1I	GGYRCC	2 cut(s)	604, 635
AccBSI	CCGCTC	1 cut(s)	138
AccII	CGCG	4 cut(s)	222, 308, 862, 875
AclWI	GGATC	1 cut(s)	764
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	465
AfaI	GTAC	3 cut(s)	55, 606, 806
AfiI	CCNNNNNNNGG	4 cut(s)	233, 511, 547, 645
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	574, 881
AjiI	CACGTC	1 cut(s)	192
AjnI	CCWGG	2 cut(s)	176, 423
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
AluBI	AGCT	7 cut(s)	66, 78, 122, 374, 526, 616, 658
AluI	AGCT	7 cut(s)	66, 78, 122, 374, 526, 616, 658
Alw26I	GTCTC	5 cut(s)	65, 155, 266, 297, 445
AlwI	GGATC	1 cut(s)	764
AlwNI	CAGNNNCTG	2 cut(s)	106, 424
AoxI	GGCC	5 cut(s)	18, 69, 133, 244, 316
ApeKI	GCWGC	2 cut(s)	250, 655
ApoI	RAATTY	1 cut(s)	465
ArsI	GACNNNNNNTTYG	4 cut(s)	392, 424, 485, 517
Asp718I	GGTACC	1 cut(s)	604
AspLEI	GCGC	2 cut(s)	310, 859
AspS9I	GGNCC	4 cut(s)	202, 245, 317, 389
AsuC2I	CCSGG	3 cut(s)	228, 475, 542
AsuHPI	GGTGA	1 cut(s)	473
AsuNHI	GCTAGC	1 cut(s)	122
AvaII	GGWCC	2 cut(s)	202, 389
BanI	GGYRCC	2 cut(s)	604, 635
BbvI	GCAGC	2 cut(s)	237, 667
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	2 cut(s)	331, 693
BciT130I	CCWGG	2 cut(s)	178, 425
BcnI	CCSGG	3 cut(s)	228, 475, 542
BcoDI	GTCTC	5 cut(s)	65, 155, 266, 297, 445
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	353
BisI	GCNGC	5 cut(s)	72, 136, 251, 656, 860
BlsI	GCNGC	5 cut(s)	73, 137, 252, 657, 861
Bme1390I	CCNGG	5 cut(s)	178, 228, 425, 475, 542
Bme18I	GGWCC	2 cut(s)	202, 389
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	4 cut(s)	202, 245, 317, 389
BmiI	GGNNCC	3 cut(s)	390, 606, 637
BmrFI	CCNGG	5 cut(s)	178, 228, 425, 475, 542
BmtI	GCTAGC	1 cut(s)	126
BoxI	GACNNNNGTC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	446
BpuMI	CCSGG	3 cut(s)	228, 475, 542
BsaI	GGTCTC	2 cut(s)	155, 266
BsaJI	CCNNGG	3 cut(s)	241, 860, 873
BsaWI	WCCGGW	1 cut(s)	458
BsaXI	ACNNNNNCTCC	6 cut(s)	694, 700, 706, 724, 730, 736
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 511, 547, 645
Bse118I	RCCGGY	3 cut(s)	16, 556, 588
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	178, 425
BseDI	CCNNGG	3 cut(s)	241, 860, 873
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	4 cut(s)	233, 511, 547, 645
BseMII	CTCAG	4 cut(s)	76, 204, 458, 684
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	530
BseXI	GCAGC	2 cut(s)	237, 667
BseYI	CCCAGC	1 cut(s)	624
Bsh1236I	CGCG	4 cut(s)	222, 308, 862, 875
Bsh1285I	CGRYCG	1 cut(s)	474
BshFI	GGCC	5 cut(s)	20, 71, 135, 246, 318
BshNI	GGYRCC	2 cut(s)	604, 635
BsiEI	CGRYCG	1 cut(s)	474
BsiSI	CCGG	7 cut(s)	17, 228, 459, 474, 542, 557, 589
BslFI	GGGAC	4 cut(s)	249, 487, 703, 869
BslI	CCNNNNNNNGG	4 cut(s)	233, 511, 547, 645
BsmAI	GTCTC	5 cut(s)	65, 155, 266, 297, 445
BsmFI	GGGAC	4 cut(s)	249, 487, 703, 869
BsnI	GGCC	5 cut(s)	20, 71, 135, 246, 318
Bso31I	GGTCTC	2 cut(s)	155, 266
Bsp143I	GATC	2 cut(s)	82, 756
Bsp19I	CCATGG	1 cut(s)	241
BspANI	GGCC	5 cut(s)	20, 71, 135, 246, 318
BspCNI	CTCAG	4 cut(s)	75, 205, 457, 685
BspFNI	CGCG	4 cut(s)	222, 308, 862, 875
BspLI	GGNNCC	3 cut(s)	390, 606, 637
BspMAI	CTGCAG	1 cut(s)	357
BspOI	GCTAGC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	764
BspQI	GCTCTTC	1 cut(s)	567
BspT107I	GGYRCC	2 cut(s)	604, 635
BspTNI	GGTCTC	2 cut(s)	155, 266
BsrBI	CCGCTC	1 cut(s)	138
BsrFI	RCCGGY	3 cut(s)	16, 556, 588
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	3 cut(s)	16, 556, 588
BssECI	CCNNGG	3 cut(s)	241, 860, 873
BssMI	GATC	2 cut(s)	82, 756
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	2 cut(s)	178, 425
Bst4CI	ACNGT	2 cut(s)	34, 570
Bst6I	CTCTTC	1 cut(s)	567
BstC8I	GCNNGC	4 cut(s)	76, 124, 248, 558
BstDEI	CTNAG	4 cut(s)	62, 213, 444, 693
BstDSI	CCRYGG	3 cut(s)	241, 860, 873
BstF5I	GGATG	1 cut(s)	442
BstFNI	CGCG	4 cut(s)	222, 308, 862, 875
BstHHI	GCGC	2 cut(s)	310, 859
BstKTI	GATC	2 cut(s)	85, 759
BstMAI	GTCTC	5 cut(s)	65, 155, 266, 297, 445
BstMBI	GATC	2 cut(s)	82, 756
BstMCI	CGRYCG	1 cut(s)	474
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	2 cut(s)	178, 425
BstPAI	GACNNNNGTC	1 cut(s)	32
BstSCI	CCNGG	5 cut(s)	176, 226, 423, 473, 540
BstSFI	CTRYAG	1 cut(s)	353
BstUI	CGCG	4 cut(s)	222, 308, 862, 875
BstV1I	GCAGC	2 cut(s)	237, 667
BstXI	CCANNNNNNTGG	1 cut(s)	530
BsuRI	GGCC	5 cut(s)	20, 71, 135, 246, 318
BtgI	CCRYGG	3 cut(s)	241, 860, 873
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	4 cut(s)	76, 124, 248, 558
CaiI	CAGNNNCTG	2 cut(s)	106, 424
CfoI	GCGC	2 cut(s)	310, 859
Cfr10I	RCCGGY	3 cut(s)	16, 556, 588
Cfr13I	GGNCC	4 cut(s)	202, 245, 317, 389
Cfr42I	CCGCGG	2 cut(s)	863, 876
CpoI	CGGWCCG	1 cut(s)	202
Csp6I	GTAC	3 cut(s)	54, 605, 805
CspI	CGGWCCG	1 cut(s)	202
CviAII	CATG	1 cut(s)	242
CviQI	GTAC	3 cut(s)	54, 605, 805
DdeI	CTNAG	4 cut(s)	62, 213, 444, 693
DpnI	GATC	2 cut(s)	84, 758
DpnII	GATC	2 cut(s)	82, 756
DrdI	GACNNNNNNGTC	1 cut(s)	196
DseDI	GACNNNNNNGTC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	241
Eco31I	GGTCTC	2 cut(s)	155, 266
Eco47I	GGWCC	2 cut(s)	202, 389
EcoRII	CCWGG	2 cut(s)	176, 423
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	1 cut(s)	245
FaiI	YATR	4 cut(s)	243, 554, 585, 852
FaqI	GGGAC	4 cut(s)	249, 487, 703, 869
FatI	CATG	1 cut(s)	241
FauI	CCCGC	4 cut(s)	255, 616, 656, 880
Fnu4HI	GCNGC	5 cut(s)	72, 136, 251, 656, 860
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	5 cut(s)	72, 136, 251, 656, 860
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	2 cut(s)	309, 858
GluI	GCNGC	5 cut(s)	72, 136, 251, 656, 860
GsaI	CCCAGC	1 cut(s)	628
GsuI	CTGGAG	1 cut(s)	446
HaeIII	GGCC	5 cut(s)	20, 71, 135, 246, 318
HapII	CCGG	7 cut(s)	17, 228, 459, 474, 542, 557, 589
HhaI	GCGC	2 cut(s)	310, 859
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	2 cut(s)	308, 857
HinP1I	GCGC	2 cut(s)	308, 857
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	2 cut(s)	207, 237
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	7 cut(s)	17, 228, 459, 474, 542, 557, 589
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	2 cut(s)	54, 340
Hpy188I	TCNGA	4 cut(s)	94, 119, 202, 447
Hpy188III	TCNNGA	4 cut(s)	25, 329, 398, 760
Hpy8I	GTNNAC	2 cut(s)	54, 340
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	34, 570
HpyCH4IV	ACGT	2 cut(s)	143, 191
HpyCH4V	TGCA	6 cut(s)	355, 418, 508, 644, 655, 752
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	4 cut(s)	62, 213, 444, 693
HpySE526I	ACGT	2 cut(s)	143, 191
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	2 cut(s)	308, 857
KpnI	GGTACC	1 cut(s)	608
KroI	GCCGGC	1 cut(s)	556
KroNI	GCCGGC	1 cut(s)	558
KspAI	GTTAAC	1 cut(s)	340
KspI	CCGCGG	2 cut(s)	863, 876
Kzo9I	GATC	2 cut(s)	82, 756
LguI	GCTCTTC	1 cut(s)	567
LmnI	GCTCC	1 cut(s)	743
Lsp1109I	GCAGC	2 cut(s)	237, 667
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	2 cut(s)	143, 191
MaeIII	GTNAC	3 cut(s)	187, 208, 216
MalI	GATC	2 cut(s)	84, 758
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	2 cut(s)	82, 756
MboII	GAAGA	4 cut(s)	400, 554, 739, 831
MfeI	CAATTG	1 cut(s)	747
MluCI	AATT	6 cut(s)	393, 465, 484, 747, 774, 847
MluI	ACGCGT	1 cut(s)	220
MlyI	GAGTC	2 cut(s)	216, 231
MmeI	TCCRAC	5 cut(s)	109, 117, 180, 414, 528
MnlI	CCTC	9 cut(s)	18, 125, 264, 336, 353, 371, 423, 508, 622
MroNI	GCCGGC	1 cut(s)	556
MseI	TTAA	3 cut(s)	339, 480, 528
MspA1I	CMGCKG	4 cut(s)	250, 658, 862, 875
MspI	CCGG	7 cut(s)	17, 228, 459, 474, 542, 557, 589
MspR9I	CCNGG	5 cut(s)	178, 228, 425, 475, 542
MunI	CAATTG	1 cut(s)	747
MvaI	CCWGG	2 cut(s)	178, 425
MvnI	CGCG	4 cut(s)	222, 308, 862, 875
MwoI	GCNNNNNNNGC	1 cut(s)	132
NaeI	GCCGGC	1 cut(s)	558
NciI	CCSGG	3 cut(s)	228, 475, 542
NcoI	CCATGG	1 cut(s)	241
NdeII	GATC	2 cut(s)	82, 756
NgoMIV	GCCGGC	1 cut(s)	556
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	3 cut(s)	390, 606, 637
NmeAIII	GCCGAG	1 cut(s)	243
NmuCI	GTSAC	2 cut(s)	187, 208
PciSI	GCTCTTC	1 cut(s)	567
PdiI	GCCGGC	1 cut(s)	558
PflFI	GACNNNGTC	1 cut(s)	206
PfoI	TCCNGGA	2 cut(s)	176, 540
PkrI	GCNGC	5 cut(s)	73, 137, 252, 657, 861
PleI	GAGTC	2 cut(s)	215, 231
PpsI	GAGTC	2 cut(s)	215, 231
PshAI	GACNNNNGTC	1 cut(s)	32
PsiI	TTATAA	1 cut(s)	585
Psp6I	CCWGG	2 cut(s)	176, 423
PspFI	CCCAGC	1 cut(s)	624
PspGI	CCWGG	2 cut(s)	176, 423
PspN4I	GGNNCC	3 cut(s)	390, 606, 637
PspPI	GGNCC	4 cut(s)	202, 245, 317, 389
PstI	CTGCAG	1 cut(s)	357
PstNI	CAGNNNCTG	2 cut(s)	106, 424
PsyI	GACNNNGTC	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	3 cut(s)	55, 606, 806
RsaNI	GTAC	3 cut(s)	54, 605, 805
Rsr2I	CGGWCCG	1 cut(s)	202
RsrII	CGGWCCG	1 cut(s)	202
SacII	CCGCGG	2 cut(s)	863, 876
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	3 cut(s)	339, 480, 528
SatI	GCNGC	5 cut(s)	72, 136, 251, 656, 860
Sau3AI	GATC	2 cut(s)	82, 756
Sau96I	GGNCC	4 cut(s)	202, 245, 317, 389
SchI	GAGTC	2 cut(s)	216, 231
ScrFI	CCNGG	5 cut(s)	178, 228, 425, 475, 542
SfcI	CTRYAG	1 cut(s)	353
Sfr303I	CCGCGG	2 cut(s)	863, 876
SgrBI	CCGCGG	2 cut(s)	863, 876
SinI	GGWCC	2 cut(s)	202, 389
Sse9I	AATT	6 cut(s)	393, 465, 484, 747, 774, 847
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	5 cut(s)	176, 226, 423, 473, 540
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	34, 570
TaiI	ACGT	2 cut(s)	146, 194
TaqI	TCGA	3 cut(s)	140, 470, 565
TaqII	GACCGA	2 cut(s)	219, 248
TasI	AATT	6 cut(s)	393, 465, 484, 747, 774, 847
TatI	WGTACW	2 cut(s)	53, 804
TauI	GCSGC	3 cut(s)	74, 138, 862
Tru1I	TTAA	3 cut(s)	339, 480, 528
Tru9I	TTAA	3 cut(s)	339, 480, 528
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	2 cut(s)	187, 208
TseI	GCWGC	2 cut(s)	250, 655
Tsp45I	GTSAC	2 cut(s)	187, 208
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	217
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	202, 389
XapI	RAATTY	1 cut(s)	465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.