Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000386.1

Orthogroup ID

OG0002683

Physical Location & Seq

Genomic Coordinates Reverse (-)

322553 .. 323062

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000386.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgctactcacttcgtcttatgaagctcgcgtctctgacttttgccttgctcattttgcaagcccaaccgctactcccaaccgcatttctggttatcgtgctccagaagtcacagatactagtaaagtaacccaaaaggcagatgtttacagctttggtgtgttgctattggagctgcttacagggaagcctccaacccaatccctcatgactgaggaaggagtagaccttccaagatgggttcactctgttgttcaagaggagtggaccgtggaggtgtttgaccttgagcttctcaggtaccagactgttgaggacgaaatggttcagattttacagattgcacttgaatgtactgttcagcaccctgataagcggccttcaatggctgaagtgactagccagattgaggagctttatagtgccagcttgaggcatggacaagatgaaaatcaggtggatgatgggatttctcagcagtatttctcaactgacacacacatcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097305 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

169

Amino Acids

19.12

Weight (kDa)

4.52

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48480
fragaria_vesca	FvH4_2g12190 FvH4_2g12190 FvH4_5g17570
malus_domestica	MD02G1259100.v1.1 MD06G1231600.v1.1 MD09G1086600.v1.1 MD09G1271200.v1.1 MD14G1238300.v1.1 MD17G1269300.v1.1
prunus_persica	Prupe.3G017300_v2.0.a1 Prupe.5G235500_v2.0.a1
pyrus_communis	pycom06g20550 pycom09g18220 pycom14g19950 pycom17g26800
rosa_chinensis	RchiOBHm_Chr3g0491091 RchiOBHm_Chr7g0178081
rosa_laevigata	RLG00000005473 RLG00000022865
rosa_multiflora	Rmu_co8170494.1_g000001 Rmu_co8379533.1_g000001 Rmu_co8445967.1_g000001 Rmu_sc0000425.1_g000007 Rmu_sc0005038.1_g000014 Rmu_ssc0000386.1_g000061 Rmu_ssc0000386.1_g000063
rosa_roxburghii	Rroxscaffold_6G00393220
rosa_rugosa	Rorug03G0246000 Rorug06G0413300
rosa_samantha	Rh3AG296200 Rh3BG332200 Rh3CG329300 Rh3DG329900 Rh7AG012600 Rh7BG012500 Rh7CG012500 Rh7DG012800
rosa_wichuraiana	Rw3G026140 Rw7G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	300
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	1 cut(s)	30
AciI	CCGC	3 cut(s)	69, 82, 376
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	2 cut(s)	302, 355
AfiI	CCNNNNNNNGG	2 cut(s)	409, 432
AgsI	TTSAA	3 cut(s)	257, 350, 384
AhlI	ACTAGT	1 cut(s)	119
AluBI	AGCT	6 cut(s)	26, 153, 175, 292, 415, 429
AluI	AGCT	6 cut(s)	26, 153, 175, 292, 415, 429
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	175
Asp700I	GAANNNNTTC	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	2 cut(s)	231, 458
BcoDI	GTCTC	1 cut(s)	37
BcuI	ACTAGT	1 cut(s)	119
BfaI	CTAG	2 cut(s)	120, 399
BisI	GCNGC	2 cut(s)	176, 377
BlsI	GCNGC	2 cut(s)	177, 378
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	87
BpuEI	CTTGAG	2 cut(s)	308, 451
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	270
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 432
Bse8I	GATNNNNATC	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	466
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	409, 432
BseMII	CTCAG	3 cut(s)	204, 310, 488
BseRI	GAGGAG	2 cut(s)	275, 425
BseXI	GCAGC	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	379
BshNI	GGYRCC	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	409, 432
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	103
BspACI	CCGC	3 cut(s)	69, 82, 376
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	3 cut(s)	205, 309, 487
BspFNI	CGCG	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	270
Bst4CI	ACNGT	3 cut(s)	271, 310, 358
BstC8I	GCNNGC	3 cut(s)	28, 61, 427
BstDEI	CTNAG	3 cut(s)	213, 296, 474
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	466
BstFNI	CGCG	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 172
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	379
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	466
Cac8I	GCNNGC	3 cut(s)	28, 61, 427
CciI	TCATGA	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	267
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	301, 354
CspCI	CAANNNNNGTGG	2 cut(s)	245, 280
CviAII	CATG	2 cut(s)	208, 437
CviQI	GTAC	2 cut(s)	301, 354
DdeI	CTNAG	3 cut(s)	213, 296, 474
Eco47I	GGWCC	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	411
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	2 cut(s)	211, 440
FaiI	YATR	4 cut(s)	21, 209, 420, 438
FatI	CATG	2 cut(s)	207, 436
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	176, 377
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	2 cut(s)	176, 377
FspBI	CTAG	2 cut(s)	120, 399
GluI	GCNGC	2 cut(s)	176, 377
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	379
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	211, 440
Hpy166II	GTNNAC	4 cut(s)	148, 226, 244, 267
Hpy188I	TCNGA	2 cut(s)	37, 330
Hpy188III	TCNNGA	3 cut(s)	104, 208, 257
Hpy8I	GTNNAC	4 cut(s)	148, 226, 244, 267
HpyAV	CCTTC	3 cut(s)	212, 239, 390
HpyCH4III	ACNGT	3 cut(s)	271, 310, 358
HpyCH4V	TGCA	2 cut(s)	59, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 172
HpyF3I	CTNAG	3 cut(s)	213, 296, 474
Hsp92II	CATG	2 cut(s)	211, 440
KpnI	GGTACC	1 cut(s)	304
LmnI	GCTCC	3 cut(s)	106, 172, 412
LpnPI	CCDG	9 cut(s)	75, 117, 168, 283, 317, 381, 416, 439, 440
Lsp1109I	GCAGC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	120, 399
MaeIII	GTNAC	3 cut(s)	109, 127, 394
MhlI	GDGCHC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	8 cut(s)	201, 208, 215, 253, 268, 307, 403, 426
MroXI	GAANNNNTTC	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	349
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	56, 172
NlaIII	CATG	2 cut(s)	211, 440
NlaIV	GGNNCC	1 cut(s)	302
NmuCI	GTSAC	2 cut(s)	109, 394
PagI	TCATGA	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	177, 378
PspN4I	GGNNCC	1 cut(s)	302
PspPI	GGNCC	1 cut(s)	267
RsaI	GTAC	2 cut(s)	302, 355
RsaNI	GTAC	2 cut(s)	301, 354
RseI	CAYNNNNRTG	1 cut(s)	349
SatI	GCNGC	2 cut(s)	176, 377
Sau96I	GGNCC	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	103
SinI	GGWCC	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	349
SmlI	CTYRAG	2 cut(s)	287, 430
SmoI	CTYRAG	2 cut(s)	287, 430
SpeI	ACTAGT	1 cut(s)	119
SsiI	CCGC	3 cut(s)	69, 82, 376
SspMI	CTAG	2 cut(s)	120, 399
TaaI	ACNGT	3 cut(s)	271, 310, 358
TatI	WGTACW	1 cut(s)	353
TauI	GCSGC	1 cut(s)	379
TseFI	GTSAC	2 cut(s)	109, 394
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	2 cut(s)	109, 394
TspDTI	ATGAA	2 cut(s)	36, 462
VpaK11BI	GGWCC	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	2 cut(s)	120, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.