Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8170494.1

Orthogroup ID

OG0002683

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 560

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8170494.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 559 bp

ctgaactgggaaatcaggtccagcattgcccttggagctgcccgtggaattgaatacctacattctcaaggccccaatgtctctcacggaaacataaagtcatccaacatcctgcttacaaaatcctatgaaggtcgggtgtctgattttggcttagcacaccttgttggaccctcttccactcccaacagagtggctggctaccgagcaccagaggtgactgatcctcgcaaggtttcacagaaggccgatgtttacagctttggggtactgctcttggagctactcaccgggaagcccccaacccatgctctcttgaatgaggaaggagttgaccttccaaggtgggttcagtccatagttaaagaagagtggacttctgaggttttcgatcttgagcttctgaggtaccagaacgtcgaggaggagatggttcagctattgcaacttgcgatagattgttcagcacagtatcctgataaacgcccttcaatatccgaagtgacaaggcgcattgaggagctacgccattctacattgcgggaagatcagcccaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

186

Amino Acids

20.92

Weight (kDa)

5.42

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48480
fragaria_vesca	FvH4_2g12190 FvH4_2g12190 FvH4_5g17570
malus_domestica	MD02G1259100.v1.1 MD06G1231600.v1.1 MD09G1086600.v1.1 MD09G1271200.v1.1 MD14G1238300.v1.1 MD17G1269300.v1.1
prunus_persica	Prupe.3G017300_v2.0.a1 Prupe.5G235500_v2.0.a1
pyrus_communis	pycom06g20550 pycom09g18220 pycom14g19950 pycom17g26800
rosa_chinensis	RchiOBHm_Chr3g0491091 RchiOBHm_Chr7g0178081
rosa_laevigata	RLG00000005473 RLG00000022865
rosa_multiflora	Rmu_co8170494.1_g000001 Rmu_co8379533.1_g000001 Rmu_co8445967.1_g000001 Rmu_sc0000425.1_g000007 Rmu_sc0005038.1_g000014 Rmu_ssc0000386.1_g000061 Rmu_ssc0000386.1_g000063
rosa_roxburghii	Rroxscaffold_6G00393220
rosa_rugosa	Rorug03G0246000 Rorug06G0413300
rosa_samantha	Rh3AG296200 Rh3BG332200 Rh3CG329300 Rh3DG329900 Rh7AG012600 Rh7BG012500 Rh7CG012500 Rh7DG012800
rosa_wichuraiana	Rw3G026140 Rw7G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	408
AccB1I	GGYRCC	1 cut(s)	408
AciI	CCGC	1 cut(s)	541
AclWI	GGATC	1 cut(s)	218
AfaI	GTAC	2 cut(s)	270, 410
AgsI	TTSAA	3 cut(s)	53, 319, 492
AluBI	AGCT	6 cut(s)	38, 261, 283, 400, 439, 523
AluI	AGCT	6 cut(s)	38, 261, 283, 400, 439, 523
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	2 cut(s)	70, 246
ApeKI	GCWGC	1 cut(s)	38
Asp718I	GGTACC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	513
AspS9I	GGNCC	3 cut(s)	18, 71, 170
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	2 cut(s)	229, 280
AvaII	GGWCC	2 cut(s)	18, 170
BanI	GGYRCC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	424
BciVI	GTATCC	1 cut(s)	483
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	85
BfuI	GTATCC	1 cut(s)	483
BisI	GCNGC	1 cut(s)	39
BlpI	GCTNAGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	292
Bme18I	GGWCC	2 cut(s)	18, 170
BmgT120I	GGNCC	3 cut(s)	18, 71, 170
BmiI	GGNNCC	3 cut(s)	73, 172, 410
BmrFI	CCNGG	1 cut(s)	292
BmrI	ACTGGG	1 cut(s)	16
BmuI	ACTGGG	1 cut(s)	16
Bpu1102I	GCTNAGC	1 cut(s)	154
BpuEI	CTTGAG	2 cut(s)	51, 416
BpuMI	CCSGG	1 cut(s)	292
BsaJI	CCNNGG	3 cut(s)	31, 43, 341
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	2 cut(s)	24, 536
BseDI	CCNNGG	3 cut(s)	31, 43, 341
BseGI	GGATG	2 cut(s)	101, 108
BseMI	GCAATG	2 cut(s)	24, 536
BseMII	CTCAG	2 cut(s)	372, 395
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	3 cut(s)	437, 440, 533
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	2 cut(s)	72, 248
BshNI	GGYRCC	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	72, 248
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	3 cut(s)	223, 391, 547
Bsp1720I	GCTNAGC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	2 cut(s)	72, 248
BspCNI	CTCAG	2 cut(s)	373, 396
BspLI	GGNNCC	3 cut(s)	73, 172, 410
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	408
BsrDI	GCAATG	2 cut(s)	24, 536
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	3 cut(s)	31, 43, 341
BssMI	GATC	3 cut(s)	223, 391, 547
BssT1I	CCWWGG	2 cut(s)	31, 341
Bst4CI	ACNGT	1 cut(s)	471
Bst6I	CTCTTC	2 cut(s)	181, 363
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	3 cut(s)	154, 381, 404
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	101, 108
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	3 cut(s)	226, 394, 550
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	3 cut(s)	223, 391, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 280
BstSCI	CCNGG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	72, 248
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	101, 108
Cac8I	GCNNGC	1 cut(s)	199
CfoI	GCGC	1 cut(s)	513
Cfr13I	GGNCC	3 cut(s)	18, 71, 170
Csp6I	GTAC	2 cut(s)	269, 409
CviAII	CATG	1 cut(s)	308
CviQI	GTAC	2 cut(s)	269, 409
DdeI	CTNAG	3 cut(s)	154, 381, 404
DpnI	GATC	3 cut(s)	225, 393, 549
DpnII	GATC	3 cut(s)	223, 391, 547
Eam1104I	CTCTTC	2 cut(s)	181, 363
EarI	CTCTTC	2 cut(s)	181, 363
Eco130I	CCWWGG	2 cut(s)	31, 341
Eco47I	GGWCC	2 cut(s)	18, 170
EcoO109I	RGGNCCY	1 cut(s)	71
EcoT14I	CCWWGG	2 cut(s)	31, 341
ErhI	CCWWGG	2 cut(s)	31, 341
FaeI	CATG	1 cut(s)	311
FaiI	YATR	4 cut(s)	95, 129, 309, 359
FatI	CATG	1 cut(s)	307
FauI	CCCGC	1 cut(s)	534
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	2 cut(s)	88, 95
Fsp4HI	GCNGC	1 cut(s)	39
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	72, 248
HapII	CCGG	1 cut(s)	291
HhaI	GCGC	1 cut(s)	513
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	229, 280
Hpy166II	GTNNAC	3 cut(s)	256, 334, 375
Hpy188I	TCNGA	4 cut(s)	145, 382, 405, 499
Hpy188III	TCNNGA	3 cut(s)	316, 395, 476
Hpy8I	GTNNAC	3 cut(s)	256, 334, 375
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	5 cut(s)	125, 238, 320, 347, 498
HpyCH4III	ACNGT	1 cut(s)	471
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	1 cut(s)	445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 280
HpyF3I	CTNAG	3 cut(s)	154, 381, 404
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	1 cut(s)	511
KpnI	GGTACC	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	223, 391, 547
LmnI	GCTCC	3 cut(s)	35, 280, 520
LpnPI	CCDG	7 cut(s)	34, 125, 183, 225, 304, 425, 489
Lsp1109I	GCAGC	1 cut(s)	25
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	2 cut(s)	217, 502
MalI	GATC	3 cut(s)	225, 393, 549
MboI	GATC	3 cut(s)	223, 391, 547
MboII	GAAGA	3 cut(s)	168, 380, 557
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	1 cut(s)	48
MmeI	TCCRAC	2 cut(s)	129, 148
MnlI	CCTC	9 cut(s)	184, 208, 237, 316, 376, 399, 415, 418, 511
MseI	TTAA	1 cut(s)	363
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	35, 280
NciI	CCSGG	1 cut(s)	292
NdeII	GATC	3 cut(s)	223, 391, 547
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	3 cut(s)	73, 172, 410
NmuCI	GTSAC	2 cut(s)	217, 502
PkrI	GCNGC	1 cut(s)	40
PspN4I	GGNNCC	3 cut(s)	73, 172, 410
PspPI	GGNCC	3 cut(s)	18, 71, 170
RsaI	GTAC	2 cut(s)	270, 410
RsaNI	GTAC	2 cut(s)	269, 409
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	3 cut(s)	223, 391, 547
Sau96I	GGNCC	3 cut(s)	18, 71, 170
ScrFI	CCNGG	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	211
SinI	GGWCC	2 cut(s)	18, 170
SmlI	CTYRAG	2 cut(s)	66, 395
SmoI	CTYRAG	2 cut(s)	66, 395
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	1 cut(s)	541
StyD4I	CCNGG	1 cut(s)	290
StyI	CCWWGG	2 cut(s)	31, 341
TaaI	ACNGT	1 cut(s)	471
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	2 cut(s)	390, 420
TasI	AATT	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseFI	GTSAC	2 cut(s)	217, 502
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	2 cut(s)	217, 502
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	1 cut(s)	102
VpaK11BI	GGWCC	2 cut(s)	18, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.