Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002683

Physical Location & Seq

Genomic Coordinates Forward (+)

13111958 .. 13115719

Gene Structure 3762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1908 bp

ATGAAGCCTCCCAAACCGGCCTTCATGACTACTGTCTTGGTGGTGTTGTGTACTTGTCTCAGCTTGGCCGCCAGCTACGATCTGGCTTCCGACAGACAGGCTCTTTTGAGTTTCCGAGCTAGCGTTGGAGGCCGCTCGACGTTTTGGAATGTGACGGAGACCAACCCCTGTTCTTGGTCCGGTGTGAGGTGCTTGTCGGACCGAGTCACTGAGTTACGCGCTCCCGGTTGGGGACTCAATGGCCCCCTGCCTCTCGGTCTCGGCAACTTGACCCAACTCCAAGCTCTGTCTCTCCGCAAAAACGCGCTTTACGGACCAATTCCTCCCGACTTTGTTAACCTCGTCAATCTGCACAACCTCTACTTGACAGGTAACAGGTTTTCGGGTCCAATTCCTGACTTTATCTTCGGTTTGCAGAGCCTGGAGAGGTTGGATGTCTCTCAGAATAAGTTTTCCGGTGAAATTTCGACCGGGTTTAATAATTTGACGAAGTTGGTGTCCCTGCATTTGGAGGAGAACCAGCTTAATGGGTCAATCCCGGAGTTGGATATGCCGGCTCTTGGACAGTTCAATGTATCTTATAACCTGCTAAACGGGTCGGTACCCGCAAAGCTTTCCGGCTGGCCGGTGGGTGCCTTTGCAGGGAACTTGCAGCTGTGCGGGAAGCCGATGACGGCCTGTAATGGGACTGAGAGTGGGAGTGGGAGTGGGAGTGGGAAGAAGTTGTCAGGTGGAGCAATTGCAGGGATCGTGATAGGTTGCGTAATTGGATTTTTTATCATTGTTGCCATTTTGTACTTTTTGTGTGGAAGAAAGAAAAATGGTGAAAGGGGTGCTAATTATGTTGCGCCGCGGAGTTTTCCGGCGATTGAAGTCCCAAAGAGATCATTGGATACCGAGAGTTCGAATGCTGATTACTCTTCTGGCCAAAAAGTGAATGTGAGTAGTAAGAACTTGGTGTTTTTTGGGAATGCGGTGAAGGTGTTTGATTTGGAGGATTTGTTGAGGGCATCGGCTGAGGTACTTGGGAAGGGGACTTTCGGGACGGCGTATAAGGCGGCTTTGGAAATGGGGTTGGCCATGGCAGTGAAGAGGTTGAAGGAAGTGACTGTATCTGACAATGAATTTAAGGAGAAGATTGATCAGATTGGGAATATGGATCATGTGAACTTGGTGCCACTCAGGGCTTACTATTATAGCAGAGACGAGAAGCTTCTGGTTTATGATTATATGCCTATGGGAAGCTTGTCTGCTCTTTTACATGGAAACAGAGGCTCTGGAAGAACTCCATTGAATTGGGAAACAAGGTGTGGCATTGCTGTCGGAGCTGCTCGTGCAATCACATACTTGCACTCTCATGGTCCCACAATCTCCCATGGAAACATCAAATCTTCAAACATTCTTCTCACTTCTTCTTATGAAGCTCGCGTCTCTGACTTTTGCCTTGCTAATTTTGCAAGCCCAACCGCTACTCCCAACCGCATTTCTGGTTATCGTGCACCAGAAGTCACAGATACTAATAAAGTAACCCAAAAGGCAGATGTTTACAGCTTTGGTGTGTTGCTATTGGAGCTGCTTACAGGGAAGCCTCCAACCCAATCCCTAATGACTGAGGAAGGAGTAGACCTTCCAAGATGGGTTCACTCTGTTGTTCGAGAGGAGTGGACTGTGGAGGTGTTTGACCTTGAGCTTCTCAGGTACCAGAATGTCGAGGACGATATGGTTCAGATTTTACAGATTGCACTTGAATGTACTGTTCAGTACCCTGATAAGCGGCCTTCAATGGCTGAAGTGACTAGCCAGATTGAGGAGCTTTATAGTGCCAGCTTGAAGCATGGACAAGATGAAAATCAGGTGGATGATGGGATTTCTCAGCAGTATTTCTCAACTGACACACACATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097305 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

635

Amino Acids

69.18

Weight (kDa)

6.12

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 64	5.2e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	83 - 175	1.1e-07	Leucine-rich repeat region
LRR_8	PF13855	116 - 175	1.1e-06	Leucine rich repeat
PK_Tyr_Ser-Thr	PF07714	340 - 601	7.9e-34	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	340 - 599	8.2e-34	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48480
fragaria_vesca	FvH4_2g12190 FvH4_2g12190 FvH4_5g17570
malus_domestica	MD02G1259100.v1.1 MD06G1231600.v1.1 MD09G1086600.v1.1 MD09G1271200.v1.1 MD14G1238300.v1.1 MD17G1269300.v1.1
prunus_persica	Prupe.3G017300_v2.0.a1 Prupe.5G235500_v2.0.a1
pyrus_communis	pycom06g20550 pycom09g18220 pycom14g19950 pycom17g26800
rosa_chinensis	RchiOBHm_Chr3g0491091 RchiOBHm_Chr7g0178081
rosa_laevigata	RLG00000005473 RLG00000022865
rosa_multiflora	Rmu_co8170494.1_g000001 Rmu_co8379533.1_g000001 Rmu_co8445967.1_g000001 Rmu_sc0000425.1_g000007 Rmu_sc0005038.1_g000014 Rmu_ssc0000386.1_g000061 Rmu_ssc0000386.1_g000063
rosa_roxburghii	Rroxscaffold_6G00393220
rosa_rugosa	Rorug03G0246000 Rorug06G0413300
rosa_samantha	Rh3AG296200 Rh3BG332200 Rh3CG329300 Rh3DG329900 Rh7AG012600 Rh7BG012500 Rh7CG012500 Rh7DG012800
rosa_wichuraiana	Rw3G026140 Rw7G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
Acc36I	ACCTGC	1 cut(s)	594
Acc65I	GGTACC	2 cut(s)	601, 1698
AccB1I	GGYRCC	4 cut(s)	601, 632, 1174, 1698
AccBSI	CCGCTC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	1623
AccII	CGCG	4 cut(s)	219, 305, 853, 1428
AclWI	GGATC	2 cut(s)	755, 1167
AcoI	YGGCCR	4 cut(s)	66, 623, 925, 1077
AcsI	RAATTY	2 cut(s)	462, 1124
AcuI	CTGAAG	1 cut(s)	1809
AfaI	GTAC	7 cut(s)	52, 603, 797, 1023, 1700, 1753, 1763
AfiI	CCNNNNNNNGG	9 cut(s)	174, 186, 230, 508, 544, 560, 642, 684, 1807
AgsI	TTSAA	8 cut(s)	571, 872, 1099, 1294, 1395, 1748, 1782, 1831
AjnI	CCWGG	1 cut(s)	420
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
Alw21I	GWGCWC	1 cut(s)	1501
Alw26I	GTCTC	7 cut(s)	62, 152, 263, 294, 442, 1197, 1435
Alw44I	GTGCAC	1 cut(s)	1497
AlwI	GGATC	2 cut(s)	755, 1167
AlwNI	CAGNNNCTG	1 cut(s)	421
AoxI	GGCC	9 cut(s)	18, 66, 130, 241, 623, 675, 925, 1077, 1775
ApaLI	GTGCAC	1 cut(s)	1497
ApeKI	GCWGC	3 cut(s)	652, 1328, 1573
ApoI	RAATTY	2 cut(s)	462, 1124
ArsI	GACNNNNNNTTYG	4 cut(s)	389, 421, 482, 514
Asp718I	GGTACC	2 cut(s)	601, 1698
AspLEI	GCGC	3 cut(s)	221, 307, 850
AspS9I	GGNCC	6 cut(s)	177, 199, 242, 314, 386, 1361
AsuC2I	CCSGG	3 cut(s)	225, 472, 539
AsuHPI	GGTGA	3 cut(s)	470, 836, 988
AsuII	TTCGAA	1 cut(s)	905
AsuNHI	GCTAGC	1 cut(s)	119
AvaII	GGWCC	5 cut(s)	177, 199, 314, 386, 1361
BaeGI	GKGCMC	1 cut(s)	1501
BalI	TGGCCA	2 cut(s)	927, 1079
BanI	GGYRCC	4 cut(s)	601, 632, 1174, 1698
BauI	CACGAG	1 cut(s)	1332
Bbv12I	GWGCWC	1 cut(s)	1501
BbvCI	CCTCAGC	1 cut(s)	1017
BbvI	GCAGC	3 cut(s)	664, 1315, 1560
BccI	CCATC	2 cut(s)	1629, 1856
BceAI	ACGGC	2 cut(s)	690, 1062
BcgI	CGANNNNNNTGC	2 cut(s)	1303, 1337
BciT130I	CCWGG	1 cut(s)	422
BciVI	GTATCC	1 cut(s)	886
BclI	TGATCA	1 cut(s)	1141
BcnI	CCSGG	3 cut(s)	225, 472, 539
BcoDI	GTCTC	7 cut(s)	62, 152, 263, 294, 442, 1197, 1435
BfaI	CTAG	2 cut(s)	120, 1797
BfuAI	ACCTGC	1 cut(s)	594
BfuI	GTATCC	1 cut(s)	886
BisI	GCNGC	8 cut(s)	69, 133, 653, 851, 1059, 1329, 1574, 1775
BlsI	GCNGC	8 cut(s)	70, 134, 654, 852, 1060, 1330, 1575, 1776
Bme1390I	CCNGG	4 cut(s)	225, 422, 472, 539
Bme18I	GGWCC	5 cut(s)	177, 199, 314, 386, 1361
BmgT120I	GGNCC	6 cut(s)	177, 199, 242, 314, 386, 1361
BmiI	GGNNCC	7 cut(s)	244, 387, 603, 634, 1176, 1363, 1700
BmrFI	CCNGG	4 cut(s)	225, 422, 472, 539
BmsI	GCATC	1 cut(s)	1019
BmtI	GCTAGC	1 cut(s)	123
BoxI	GACNNNNGTC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	1017
Bpu14I	TTCGAA	1 cut(s)	905
BpuEI	CTTGAG	1 cut(s)	1706
BpuMI	CCSGG	3 cut(s)	225, 472, 539
BsaBI	GATNNNNATC	1 cut(s)	1848
BsaI	GGTCTC	2 cut(s)	152, 263
BsaJI	CCNNGG	3 cut(s)	851, 1080, 1375
BsaWI	WCCGGW	2 cut(s)	179, 455
BsaXI	ACNNNNNCTCC	8 cut(s)	691, 697, 721, 727, 986, 1016, 1456, 1486
Bsc4I	CCNNNNNNNGG	9 cut(s)	174, 186, 230, 508, 544, 560, 642, 684, 1807
Bse118I	RCCGGY	3 cut(s)	16, 553, 625
Bse3DI	GCAATG	1 cut(s)	1314
Bse8I	GATNNNNATC	1 cut(s)	1848
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	3 cut(s)	851, 1080, 1375
BseGI	GGATG	2 cut(s)	439, 1864
BseJI	GATNNNNATC	1 cut(s)	1848
BseLI	CCNNNNNNNGG	9 cut(s)	174, 186, 230, 508, 544, 560, 642, 684, 1807
BseMI	GCAATG	1 cut(s)	1314
BseMII	CTCAG	9 cut(s)	73, 201, 455, 681, 1008, 1195, 1602, 1708, 1886
BseRI	GAGGAG	3 cut(s)	527, 1673, 1823
BseSI	GKGCMC	1 cut(s)	1501
BseXI	GCAGC	3 cut(s)	664, 1315, 1560
BsgI	GTGCAG	1 cut(s)	335
Bsh1236I	CGCG	4 cut(s)	219, 305, 853, 1428
Bsh1285I	CGRYCG	1 cut(s)	471
BshFI	GGCC	9 cut(s)	20, 68, 132, 243, 625, 677, 927, 1079, 1777
BshNI	GGYRCC	4 cut(s)	601, 632, 1174, 1698
BsiEI	CGRYCG	1 cut(s)	471
BsiHKAI	GWGCWC	1 cut(s)	1501
BslFI	GGGAC	7 cut(s)	246, 484, 700, 860, 1048, 1057, 1347
BslI	CCNNNNNNNGG	9 cut(s)	174, 186, 230, 508, 544, 560, 642, 684, 1807
BsmAI	GTCTC	7 cut(s)	62, 152, 263, 294, 442, 1197, 1435
BsmBI	CGTCTC	2 cut(s)	1197, 1435
BsmFI	GGGAC	7 cut(s)	246, 484, 700, 860, 1048, 1057, 1347
BsmI	GAATGC	2 cut(s)	913, 976
BsnI	GGCC	9 cut(s)	20, 68, 132, 243, 625, 677, 927, 1079, 1777
Bso31I	GGTCTC	2 cut(s)	152, 263
Bsp119I	TTCGAA	1 cut(s)	905
Bsp1286I	GDGCHC	1 cut(s)	1501
Bsp143I	GATC	5 cut(s)	79, 747, 884, 1141, 1159
Bsp19I	CCATGG	2 cut(s)	1080, 1375
BspANI	GGCC	9 cut(s)	20, 68, 132, 243, 625, 677, 927, 1079, 1777
BspCNI	CTCAG	9 cut(s)	72, 202, 454, 682, 1009, 1194, 1603, 1707, 1885
BspFNI	CGCG	4 cut(s)	219, 305, 853, 1428
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	7 cut(s)	244, 387, 603, 634, 1176, 1363, 1700
BspMI	ACCTGC	1 cut(s)	594
BspOI	GCTAGC	1 cut(s)	123
BspPI	GGATC	2 cut(s)	755, 1167
BspT104I	TTCGAA	1 cut(s)	905
BspT107I	GGYRCC	4 cut(s)	601, 632, 1174, 1698
BspTNI	GGTCTC	2 cut(s)	152, 263
BsrBI	CCGCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	1314
BsrFI	RCCGGY	3 cut(s)	16, 553, 625
BssAI	RCCGGY	3 cut(s)	16, 553, 625
BssECI	CCNNGG	3 cut(s)	851, 1080, 1375
BssMI	GATC	5 cut(s)	79, 747, 884, 1141, 1159
BssSI	CACGAG	1 cut(s)	1332
BssT1I	CCWWGG	2 cut(s)	1080, 1375
Bst2BI	CACGAG	1 cut(s)	1332
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	5 cut(s)	34, 567, 1111, 1669, 1756
Bst6I	CTCTTC	2 cut(s)	925, 1085
BstBI	TTCGAA	1 cut(s)	905
BstC8I	GCNNGC	7 cut(s)	73, 121, 555, 623, 1426, 1459, 1825
BstDEI	CTNAG	9 cut(s)	59, 210, 441, 690, 1017, 1181, 1611, 1694, 1872
BstDSI	CCRYGG	3 cut(s)	851, 1080, 1375
BstF5I	GGATG	2 cut(s)	439, 1864
BstFNI	CGCG	4 cut(s)	219, 305, 853, 1428
BstHHI	GCGC	3 cut(s)	221, 307, 850
BstKTI	GATC	5 cut(s)	82, 750, 887, 1144, 1162
BstMAI	GTCTC	7 cut(s)	62, 152, 263, 294, 442, 1197, 1435
BstMBI	GATC	5 cut(s)	79, 747, 884, 1141, 1159
BstMCI	CGRYCG	1 cut(s)	471
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 1055, 1325, 1334, 1454, 1570
BstNI	CCWGG	1 cut(s)	422
BstPAI	GACNNNNGTC	1 cut(s)	32
BstSCI	CCNGG	4 cut(s)	223, 420, 470, 537
BstSLI	GKGCMC	1 cut(s)	1501
BstUI	CGCG	4 cut(s)	219, 305, 853, 1428
BstV1I	GCAGC	3 cut(s)	664, 1315, 1560
BstXI	CCANNNNNNTGG	2 cut(s)	527, 1296
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	9 cut(s)	20, 68, 132, 243, 625, 677, 927, 1079, 1777
BtgI	CCRYGG	3 cut(s)	851, 1080, 1375
BtsCI	GGATG	2 cut(s)	439, 1864
BtsI	GCAGTG	1 cut(s)	1092
BtsIMutI	CAGTG	2 cut(s)	207, 1092
BveI	ACCTGC	1 cut(s)	594
Cac8I	GCNNGC	7 cut(s)	73, 121, 555, 623, 1426, 1459, 1825
CaiI	CAGNNNCTG	1 cut(s)	421
CciI	TCATGA	1 cut(s)	24
CfoI	GCGC	3 cut(s)	221, 307, 850
Cfr10I	RCCGGY	3 cut(s)	16, 553, 625
Cfr13I	GGNCC	6 cut(s)	177, 199, 242, 314, 386, 1361
Cfr42I	CCGCGG	1 cut(s)	854
CpoI	CGGWCCG	1 cut(s)	199
CseI	GACGC	1 cut(s)	1417
Csp6I	GTAC	7 cut(s)	51, 602, 796, 1022, 1699, 1752, 1762
CspI	CGGWCCG	1 cut(s)	199
CviAII	CATG	7 cut(s)	25, 1081, 1163, 1262, 1358, 1376, 1835
CviQI	GTAC	7 cut(s)	51, 602, 796, 1022, 1699, 1752, 1762
DdeI	CTNAG	9 cut(s)	59, 210, 441, 690, 1017, 1181, 1611, 1694, 1872
DpnI	GATC	5 cut(s)	81, 749, 886, 1143, 1161
DpnII	GATC	5 cut(s)	79, 747, 884, 1141, 1159
EaeI	YGGCCR	4 cut(s)	66, 623, 925, 1077
Eam1104I	CTCTTC	2 cut(s)	925, 1085
EarI	CTCTTC	2 cut(s)	925, 1085
Eco130I	CCWWGG	2 cut(s)	1080, 1375
Eco31I	GGTCTC	2 cut(s)	152, 263
Eco47I	GGWCC	5 cut(s)	177, 199, 314, 386, 1361
Eco57I	CTGAAG	1 cut(s)	1809
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	2 cut(s)	1080, 1375
ErhI	CCWWGG	2 cut(s)	1080, 1375
Esp3I	CGTCTC	2 cut(s)	1197, 1435
FaeI	CATG	7 cut(s)	28, 1084, 1166, 1265, 1361, 1379, 1838
FaqI	GGGAC	7 cut(s)	246, 484, 700, 860, 1048, 1057, 1347
FatI	CATG	7 cut(s)	24, 1080, 1162, 1261, 1357, 1375, 1834
FauI	CCCGC	2 cut(s)	613, 653
FbaI	TGATCA	1 cut(s)	1141
FblI	GTMKAC	1 cut(s)	1623
Fnu4HI	GCNGC	8 cut(s)	69, 133, 653, 851, 1059, 1329, 1574, 1775
FokI	GGATG	2 cut(s)	446, 1871
Fsp4HI	GCNGC	8 cut(s)	69, 133, 653, 851, 1059, 1329, 1574, 1775
FspBI	CTAG	2 cut(s)	120, 1797
GlaI	GCGC	3 cut(s)	220, 306, 849
GluI	GCNGC	8 cut(s)	69, 133, 653, 851, 1059, 1329, 1574, 1775
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	9 cut(s)	20, 68, 132, 243, 625, 677, 927, 1079, 1777
HgaI	GACGC	1 cut(s)	1417
HhaI	GCGC	3 cut(s)	221, 307, 850
Hin1II	CATG	7 cut(s)	28, 1084, 1166, 1265, 1361, 1379, 1838
Hin6I	GCGC	3 cut(s)	219, 305, 848
HinP1I	GCGC	3 cut(s)	219, 305, 848
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	3 cut(s)	611, 1211, 1243
HinfI	GANTC	2 cut(s)	204, 234
HpaI	GTTAAC	1 cut(s)	337
HphI	GGTGA	3 cut(s)	470, 836, 988
Hpy166II	GTNNAC	8 cut(s)	51, 337, 1168, 1499, 1546, 1624, 1642, 1665
Hpy188I	TCNGA	9 cut(s)	91, 116, 199, 444, 1117, 1146, 1325, 1435, 1728
Hpy188III	TCNNGA	7 cut(s)	25, 326, 395, 751, 1042, 1278, 1655
Hpy8I	GTNNAC	8 cut(s)	51, 337, 1168, 1499, 1546, 1624, 1642, 1665
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	7 cut(s)	31, 973, 1024, 1093, 1610, 1637, 1788
HpyCH4III	ACNGT	5 cut(s)	34, 567, 1111, 1669, 1756
HpyCH4IV	ACGT	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 1055, 1325, 1334, 1454, 1570
HpyF3I	CTNAG	9 cut(s)	59, 210, 441, 690, 1017, 1181, 1611, 1694, 1872
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	7 cut(s)	28, 1084, 1166, 1265, 1361, 1379, 1838
HspAI	GCGC	3 cut(s)	219, 305, 848
KpnI	GGTACC	2 cut(s)	605, 1702
KroI	GCCGGC	1 cut(s)	553
KroNI	GCCGGC	1 cut(s)	555
Ksp22I	TGATCA	1 cut(s)	1141
KspAI	GTTAAC	1 cut(s)	337
KspI	CCGCGG	1 cut(s)	854
Kzo9I	GATC	5 cut(s)	79, 747, 884, 1141, 1159
LmnI	GCTCC	5 cut(s)	226, 734, 1325, 1570, 1810
Lsp1109I	GCAGC	3 cut(s)	664, 1315, 1560
LweI	GCATC	1 cut(s)	1019
MaeI	CTAG	2 cut(s)	120, 1797
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	8 cut(s)	151, 205, 213, 371, 1105, 1507, 1525, 1792
MalI	GATC	5 cut(s)	81, 749, 886, 1143, 1161
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	5 cut(s)	79, 747, 884, 1141, 1159
MfeI	CAATTG	1 cut(s)	738
MhlI	GDGCHC	1 cut(s)	1501
MlsI	TGGCCA	2 cut(s)	927, 1079
MluNI	TGGCCA	2 cut(s)	927, 1079
MlyI	GAGTC	2 cut(s)	213, 228
MmeI	TCCRAC	7 cut(s)	106, 114, 177, 411, 525, 1303, 1616
Mox20I	TGGCCA	2 cut(s)	927, 1079
MroNI	GCCGGC	1 cut(s)	553
MscI	TGGCCA	2 cut(s)	927, 1079
MseI	TTAA	4 cut(s)	336, 477, 525, 1128
MslI	CAYNNNNRTG	3 cut(s)	1085, 1356, 1747
Msp20I	TGGCCA	2 cut(s)	927, 1079
MspA1I	CMGCKG	2 cut(s)	655, 853
MspR9I	CCNGG	4 cut(s)	225, 422, 472, 539
MunI	CAATTG	1 cut(s)	738
Mva1269I	GAATGC	2 cut(s)	913, 976
MvaI	CCWGG	1 cut(s)	422
MvnI	CGCG	4 cut(s)	219, 305, 853, 1428
MwoI	GCNNNNNNNGC	6 cut(s)	129, 1055, 1325, 1334, 1454, 1570
NaeI	GCCGGC	1 cut(s)	555
NciI	CCSGG	3 cut(s)	225, 472, 539
NcoI	CCATGG	2 cut(s)	1080, 1375
NdeII	GATC	5 cut(s)	79, 747, 884, 1141, 1159
NgoMIV	GCCGGC	1 cut(s)	553
NheI	GCTAGC	1 cut(s)	119
NlaIII	CATG	7 cut(s)	28, 1084, 1166, 1265, 1361, 1379, 1838
NlaIV	GGNNCC	7 cut(s)	244, 387, 603, 634, 1176, 1363, 1700
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	5 cut(s)	151, 205, 1105, 1507, 1792
NspV	TTCGAA	1 cut(s)	905
PagI	TCATGA	1 cut(s)	24
PctI	GAATGC	2 cut(s)	913, 976
PdiI	GCCGGC	1 cut(s)	555
PflFI	GACNNNGTC	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	537
PkrI	GCNGC	8 cut(s)	70, 134, 654, 852, 1060, 1330, 1575, 1776
PleI	GAGTC	2 cut(s)	212, 228
PpsI	GAGTC	2 cut(s)	212, 228
PshAI	GACNNNNGTC	1 cut(s)	32
PsiI	TTATAA	1 cut(s)	582
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	7 cut(s)	244, 387, 603, 634, 1176, 1363, 1700
PspPI	GGNCC	6 cut(s)	177, 199, 242, 314, 386, 1361
PstNI	CAGNNNCTG	1 cut(s)	421
PsyI	GACNNNGTC	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	655
RsaI	GTAC	7 cut(s)	52, 603, 797, 1023, 1700, 1753, 1763
RsaNI	GTAC	7 cut(s)	51, 602, 796, 1022, 1699, 1752, 1762
RseI	CAYNNNNRTG	3 cut(s)	1085, 1356, 1747
Rsr2I	CGGWCCG	1 cut(s)	199
RsrII	CGGWCCG	1 cut(s)	199
SacII	CCGCGG	1 cut(s)	854
SaqAI	TTAA	4 cut(s)	336, 477, 525, 1128
SatI	GCNGC	8 cut(s)	69, 133, 653, 851, 1059, 1329, 1574, 1775
Sau3AI	GATC	5 cut(s)	79, 747, 884, 1141, 1159
Sau96I	GGNCC	6 cut(s)	177, 199, 242, 314, 386, 1361
SchI	GAGTC	2 cut(s)	213, 228
ScrFI	CCNGG	4 cut(s)	225, 422, 472, 539
SduI	GDGCHC	1 cut(s)	1501
SfaNI	GCATC	1 cut(s)	1019
Sfr303I	CCGCGG	1 cut(s)	854
SfuI	TTCGAA	1 cut(s)	905
SgrBI	CCGCGG	1 cut(s)	854
SinI	GGWCC	5 cut(s)	177, 199, 314, 386, 1361
SmiMI	CAYNNNNRTG	3 cut(s)	1085, 1356, 1747
SmlI	CTYRAG	1 cut(s)	1685
SmoI	CTYRAG	1 cut(s)	1685
SspMI	CTAG	2 cut(s)	120, 1797
StyD4I	CCNGG	4 cut(s)	223, 420, 470, 537
StyI	CCWWGG	2 cut(s)	1080, 1375
TaaI	ACNGT	5 cut(s)	34, 567, 1111, 1669, 1756
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	5 cut(s)	137, 467, 905, 1654, 1710
TaqII	GACCGA	2 cut(s)	216, 245
TatI	WGTACW	3 cut(s)	50, 795, 1751
TauI	GCSGC	5 cut(s)	71, 135, 853, 1061, 1777
Tru1I	TTAA	4 cut(s)	336, 477, 525, 1128
Tru9I	TTAA	4 cut(s)	336, 477, 525, 1128
TscAI	CASTG	2 cut(s)	214, 1092
TseFI	GTSAC	5 cut(s)	151, 205, 1105, 1507, 1792
TseI	GCWGC	3 cut(s)	652, 1328, 1573
Tsp45I	GTSAC	5 cut(s)	151, 205, 1105, 1507, 1792
TspDTI	ATGAA	5 cut(s)	13, 17, 1137, 1434, 1860
TspGWI	ACGGA	2 cut(s)	170, 327
TspRI	CASTG	2 cut(s)	214, 1092
Tth111I	GACNNNGTC	1 cut(s)	203
VneI	GTGCAC	1 cut(s)	1497
VpaK11BI	GGWCC	5 cut(s)	177, 199, 314, 386, 1361
XapI	RAATTY	2 cut(s)	462, 1124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	1623
XspI	CTAG	2 cut(s)	120, 1797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.