Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002683

Physical Location & Seq

Genomic Coordinates Reverse (-)

36481026 .. 36484874

Gene Structure 3849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG329300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1911 bp

ATGAAGCCTCCAAAACCGGCCTTCACGACCACTGTCTTGGTGGTGGTGTTGTGTACTTGTCTCAGCTTGGCCGCCAGCTACGATCTGGCTTCCGACAGACAGGCTCTGTTGAGTTTCCGAGCTAGCGTTGGAGGCCGCTCGACGTTTTGGAATGTGACGGAGACCAACCCCTGTTCCTGGACTGGTGTGACGTGCGTGTCGGACCGAGTCACTGAGTTACGCGTTCCCGGTTGGGGACTCCATGGCCCGCTGCCTCTCGGTCTCGGCAACTTGACCAAACTCCAAGCCCTGTCTCTCCGCAAAAACGCGCTTTACGGCCCGATACCTCCCGACTTTGTTAACCTCGTCAATCTGCAGAACCTCTACTTGACAGCTAACAGGTTTTCGGGTCCAATTCCTGACTTTATCTTCGGTTTGCAGAGCCTGGAGAGGTTGGATGTCTCTCAGAATAAGTTTTCCGGTGAAATTTCGACCGGGTTTAATAATTTGACGAACTTGGTGTCCCTGCATTTGGAGGAGAACCAGCTTAATGGGTCAATCCCGGAGTTGGATATGCCGGCTCTTCGACAGTTCAATGTATCTTATAACCGGCTAAACGGGTCGGTACCCGCAAAGCTTTCAGGCTGGGAGGTGGGTGCCTTTGCAGGGAACTTGCAGCTGTGCGGGAAGCCGATGACGGCCTGTAATGGGACTGAGATTGGGAGTGGGAGTGGGAGTAAGAAGAAGTTGTCAGGTGGAGCAATTGCAGGGATCGTGATAGGTTGCGTAATTGGATTTTTTATCATTGTTGCCATTTTGTACTTTTTGTGTGGAAGAAAGAAAAATGGGGAAAAGGGTGCTAATTATGTTGCGCCGCGGAGTTTTCCCGCGGTTGAAGTCCCAAAGAGATCATTGGATACCGAGAGTTCGAATGCTGATTACTCTTCTGGCCAAAAAAGGAGTGTGAGTAGTAAGAACTTGGTGTTTTTTGGGAATGCGGTGAAGGTGTTTGATTTGGAGGATTTGTTGAGGGCATCGGCTGAGGTACTTGGGAAGGGGACTTTTGGGACGGCGTATAAGGCGGCTTTGGAAATGGGGGTGTCCATGGCAGTGAAGAGGTTGAAGGAAGTGACTGTATCGGATAATGAATTTAAGGAGAAGATTGATCATATTGGGAATATGGATCATGTGAACTTGGTGCCACTCAGGGCTTACTATTATAGCAGAGACGAGAAGCTTCTGGTTTATGATTACATGCCTATGGGAAGCTTGTCTGCTCTTTTACATGGAAACAGAGGCTCTGGAAGAACTCCATTGAATTGGGAAACAAGGTGTGGCATTGCTGTCGGGGCTGCTCGTGCAATCACATACTTGCACTCTCATGGTCCCACAATCTCCCATGGAAACATCAAATCTTCAAACATTCTTCTCACTTCGTCTTATGAAGCTCGCGTCTCTGACTTTTGCCTTGCTCATTTTGCAAGCCCAACCGCTACTCCCAACCGCATTTCTGGTTATCGTGCTCCAGAAGTCACAGATACTAGTAAAGTAACCCAAAAGGCAGATGTTTACAGCTTTGGTGTGTTGCTATTGGAGCTGCTTACAGGGAAGGCTCCAACCCAATCCCTCATGACTGAGGAAGGAGTAGACCTTCCAAGATGGGTTCACTCTGTTGTTCGAGAGGAGTGGACTGTGGAGGTGTTTGACCTTGAGCTTCTCAGGTACCAGACTGTCGAGGACGAAATGGTTCAGATTTTACAGATTGCACTTGAATGTACTGTTCAGCACCCTGATAAGCGGCCTTCAATGGCTGAAGTGACCAGCCAGATTGAGGAGCTTTATAGTGCCAGCTTGAGGCATGGACAAGATGAAAATCAGGTGGATGATGGGATTTCTCAGCAGTATTTCTCAACTGACACACACATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097305 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

636

Amino Acids

69.48

Weight (kDa)

6.52

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	30 - 65	3.1e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	84 - 175	9.1e-08	Leucine-rich repeat region
LRR_8	PF13855	117 - 176	2.1e-06	Leucine rich repeat
PK_Tyr_Ser-Thr	PF07714	341 - 602	9.3e-35	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	341 - 600	1.9e-33	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48480
fragaria_vesca	FvH4_2g12190 FvH4_2g12190 FvH4_5g17570
malus_domestica	MD02G1259100.v1.1 MD06G1231600.v1.1 MD09G1086600.v1.1 MD09G1271200.v1.1 MD14G1238300.v1.1 MD17G1269300.v1.1
prunus_persica	Prupe.3G017300_v2.0.a1 Prupe.5G235500_v2.0.a1
pyrus_communis	pycom06g20550 pycom09g18220 pycom14g19950 pycom17g26800
rosa_chinensis	RchiOBHm_Chr3g0491091 RchiOBHm_Chr7g0178081
rosa_laevigata	RLG00000005473 RLG00000022865
rosa_multiflora	Rmu_co8170494.1_g000001 Rmu_co8379533.1_g000001 Rmu_co8445967.1_g000001 Rmu_sc0000425.1_g000007 Rmu_sc0005038.1_g000014 Rmu_ssc0000386.1_g000061 Rmu_ssc0000386.1_g000063
rosa_roxburghii	Rroxscaffold_6G00393220
rosa_rugosa	Rorug03G0246000 Rorug06G0413300
rosa_samantha	Rh3AG296200 Rh3BG332200 Rh3CG329300 Rh3DG329900 Rh7AG012600 Rh7BG012500 Rh7CG012500 Rh7DG012800
rosa_wichuraiana	Rw3G026140 Rw7G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
AasI	GACNNNNNNGTC	1 cut(s)	196
Acc65I	GGTACC	2 cut(s)	604, 1701
AccB1I	GGYRCC	4 cut(s)	604, 635, 1177, 1701
AccBSI	CCGCTC	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	1626
AccII	CGCG	5 cut(s)	222, 308, 856, 869, 1431
AclWI	GGATC	2 cut(s)	758, 1170
AcoI	YGGCCR	2 cut(s)	69, 928
AcsI	RAATTY	2 cut(s)	465, 1127
AcuI	CTGAAG	1 cut(s)	1812
AfaI	GTAC	6 cut(s)	55, 606, 800, 1026, 1703, 1756
AfiI	CCNNNNNNNGG	8 cut(s)	177, 233, 511, 547, 645, 687, 1810, 1833
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	7 cut(s)	574, 875, 1102, 1297, 1398, 1751, 1785
AhlI	ACTAGT	1 cut(s)	1520
AjiI	CACGTC	1 cut(s)	192
AjnI	CCWGG	2 cut(s)	176, 423
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
Alw21I	GWGCWC	1 cut(s)	1504
Alw26I	GTCTC	7 cut(s)	65, 155, 266, 297, 445, 1200, 1438
AlwI	GGATC	2 cut(s)	758, 1170
AlwNI	CAGNNNCTG	2 cut(s)	106, 424
AoxI	GGCC	8 cut(s)	18, 69, 133, 244, 316, 678, 928, 1778
ApeKI	GCWGC	4 cut(s)	250, 655, 1331, 1576
ApoI	RAATTY	2 cut(s)	465, 1127
ArsI	GACNNNNNNTTYG	4 cut(s)	392, 424, 485, 517
Asp700I	GAANNNNTTC	1 cut(s)	1725
Asp718I	GGTACC	2 cut(s)	604, 1701
AspLEI	GCGC	2 cut(s)	310, 853
AspS9I	GGNCC	5 cut(s)	202, 245, 317, 389, 1364
AsuC2I	CCSGG	3 cut(s)	228, 475, 542
AsuHPI	GGTGA	2 cut(s)	473, 991
AsuII	TTCGAA	1 cut(s)	908
AsuNHI	GCTAGC	1 cut(s)	122
AvaII	GGWCC	3 cut(s)	202, 389, 1364
BalI	TGGCCA	1 cut(s)	930
BanI	GGYRCC	4 cut(s)	604, 635, 1177, 1701
BauI	CACGAG	1 cut(s)	1335
Bbv12I	GWGCWC	1 cut(s)	1504
BbvCI	CCTCAGC	1 cut(s)	1020
BbvI	GCAGC	4 cut(s)	237, 667, 1318, 1563
BccI	CCATC	2 cut(s)	1632, 1859
BceAI	ACGGC	3 cut(s)	331, 693, 1065
BcgI	CGANNNNNNTGC	2 cut(s)	1306, 1340
BciT130I	CCWGG	2 cut(s)	178, 425
BciVI	GTATCC	1 cut(s)	889
BclI	TGATCA	1 cut(s)	1144
BcnI	CCSGG	3 cut(s)	228, 475, 542
BcoDI	GTCTC	7 cut(s)	65, 155, 266, 297, 445, 1200, 1438
BcuI	ACTAGT	1 cut(s)	1520
BfaI	CTAG	2 cut(s)	123, 1521
BfmI	CTRYAG	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	889
BisI	GCNGC	9 cut(s)	72, 136, 251, 656, 854, 1062, 1332, 1577, 1778
BlsI	GCNGC	9 cut(s)	73, 137, 252, 657, 855, 1063, 1333, 1578, 1779
Bme1390I	CCNGG	5 cut(s)	178, 228, 425, 475, 542
Bme18I	GGWCC	3 cut(s)	202, 389, 1364
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	5 cut(s)	202, 245, 317, 389, 1364
BmiI	GGNNCC	7 cut(s)	390, 606, 637, 1179, 1366, 1593, 1703
BmrFI	CCNGG	5 cut(s)	178, 228, 425, 475, 542
BmsI	GCATC	1 cut(s)	1022
BmtI	GCTAGC	1 cut(s)	126
BoxI	GACNNNNGTC	1 cut(s)	32
BpmI	CTGGAG	2 cut(s)	446, 1488
Bpu10I	CCTNAGC	1 cut(s)	1020
Bpu14I	TTCGAA	1 cut(s)	908
BpuEI	CTTGAG	2 cut(s)	1709, 1852
BpuMI	CCSGG	3 cut(s)	228, 475, 542
BsaBI	GATNNNNATC	1 cut(s)	1851
BsaI	GGTCTC	2 cut(s)	155, 266
BsaJI	CCNNGG	5 cut(s)	241, 854, 867, 1083, 1378
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	8 cut(s)	177, 233, 511, 547, 645, 687, 1810, 1833
Bse118I	RCCGGY	3 cut(s)	16, 556, 588
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	1317
Bse8I	GATNNNNATC	1 cut(s)	1851
BseBI	CCWGG	2 cut(s)	178, 425
BseDI	CCNNGG	5 cut(s)	241, 854, 867, 1083, 1378
BseGI	GGATG	2 cut(s)	442, 1867
BseJI	GATNNNNATC	1 cut(s)	1851
BseLI	CCNNNNNNNGG	8 cut(s)	177, 233, 511, 547, 645, 687, 1810, 1833
BseMI	GCAATG	1 cut(s)	1317
BseMII	CTCAG	9 cut(s)	76, 204, 458, 684, 1011, 1198, 1605, 1711, 1889
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	3 cut(s)	530, 1676, 1826
BseXI	GCAGC	4 cut(s)	237, 667, 1318, 1563
BseYI	CCCAGC	1 cut(s)	624
Bsh1236I	CGCG	5 cut(s)	222, 308, 856, 869, 1431
Bsh1285I	CGRYCG	1 cut(s)	474
BshFI	GGCC	8 cut(s)	20, 71, 135, 246, 318, 680, 930, 1780
BshNI	GGYRCC	4 cut(s)	604, 635, 1177, 1701
BsiEI	CGRYCG	1 cut(s)	474
BsiHKAI	GWGCWC	1 cut(s)	1504
BsiSI	CCGG	7 cut(s)	17, 228, 459, 474, 542, 557, 589
BslFI	GGGAC	7 cut(s)	249, 487, 703, 863, 1051, 1060, 1350
BslI	CCNNNNNNNGG	8 cut(s)	177, 233, 511, 547, 645, 687, 1810, 1833
BsmAI	GTCTC	7 cut(s)	65, 155, 266, 297, 445, 1200, 1438
BsmBI	CGTCTC	2 cut(s)	1200, 1438
BsmFI	GGGAC	7 cut(s)	249, 487, 703, 863, 1051, 1060, 1350
BsmI	GAATGC	2 cut(s)	916, 979
BsnI	GGCC	8 cut(s)	20, 71, 135, 246, 318, 680, 930, 1780
Bso31I	GGTCTC	2 cut(s)	155, 266
Bsp119I	TTCGAA	1 cut(s)	908
Bsp1286I	GDGCHC	1 cut(s)	1504
Bsp143I	GATC	5 cut(s)	82, 750, 887, 1144, 1162
Bsp19I	CCATGG	3 cut(s)	241, 1083, 1378
BspANI	GGCC	8 cut(s)	20, 71, 135, 246, 318, 680, 930, 1780
BspCNI	CTCAG	9 cut(s)	75, 205, 457, 685, 1012, 1197, 1606, 1710, 1888
BspFNI	CGCG	5 cut(s)	222, 308, 856, 869, 1431
BspHI	TCATGA	1 cut(s)	1608
BspLI	GGNNCC	7 cut(s)	390, 606, 637, 1179, 1366, 1593, 1703
BspMAI	CTGCAG	1 cut(s)	357
BspOI	GCTAGC	1 cut(s)	126
BspPI	GGATC	2 cut(s)	758, 1170
BspQI	GCTCTTC	1 cut(s)	567
BspT104I	TTCGAA	1 cut(s)	908
BspT107I	GGYRCC	4 cut(s)	604, 635, 1177, 1701
BspTNI	GGTCTC	2 cut(s)	155, 266
BsrBI	CCGCTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	1317
BsrFI	RCCGGY	3 cut(s)	16, 556, 588
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	3 cut(s)	16, 556, 588
BssECI	CCNNGG	5 cut(s)	241, 854, 867, 1083, 1378
BssMI	GATC	5 cut(s)	82, 750, 887, 1144, 1162
BssSI	CACGAG	1 cut(s)	1335
BssT1I	CCWWGG	3 cut(s)	241, 1083, 1378
Bst2BI	CACGAG	1 cut(s)	1335
Bst2UI	CCWGG	2 cut(s)	178, 425
Bst4CI	ACNGT	6 cut(s)	34, 570, 1114, 1672, 1711, 1759
Bst6I	CTCTTC	3 cut(s)	567, 928, 1088
BstBI	TTCGAA	1 cut(s)	908
BstC8I	GCNNGC	7 cut(s)	76, 124, 248, 558, 1429, 1462, 1828
BstDEI	CTNAG	9 cut(s)	62, 213, 444, 693, 1020, 1184, 1614, 1697, 1875
BstDSI	CCRYGG	5 cut(s)	241, 854, 867, 1083, 1378
BstF5I	GGATG	2 cut(s)	442, 1867
BstFNI	CGCG	5 cut(s)	222, 308, 856, 869, 1431
BstHHI	GCGC	2 cut(s)	310, 853
BstKTI	GATC	5 cut(s)	85, 753, 890, 1147, 1165
BstMAI	GTCTC	7 cut(s)	65, 155, 266, 297, 445, 1200, 1438
BstMBI	GATC	5 cut(s)	82, 750, 887, 1144, 1162
BstMCI	CGRYCG	1 cut(s)	474
BstMWI	GCNNNNNNNGC	6 cut(s)	132, 1058, 1328, 1337, 1457, 1573
BstNI	CCWGG	2 cut(s)	178, 425
BstNSI	RCATGY	1 cut(s)	1237
BstPAI	GACNNNNGTC	1 cut(s)	32
BstSCI	CCNGG	5 cut(s)	176, 226, 423, 473, 540
BstSFI	CTRYAG	1 cut(s)	353
BstUI	CGCG	5 cut(s)	222, 308, 856, 869, 1431
BstV1I	GCAGC	4 cut(s)	237, 667, 1318, 1563
BstXI	CCANNNNNNTGG	3 cut(s)	37, 530, 1299
BsuI	GTATCC	1 cut(s)	889
BsuRI	GGCC	8 cut(s)	20, 71, 135, 246, 318, 680, 930, 1780
BtgI	CCRYGG	5 cut(s)	241, 854, 867, 1083, 1378
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	442, 1867
BtsI	GCAGTG	1 cut(s)	1095
BtsIMutI	CAGTG	3 cut(s)	30, 210, 1095
Cac8I	GCNNGC	7 cut(s)	76, 124, 248, 558, 1429, 1462, 1828
CaiI	CAGNNNCTG	2 cut(s)	106, 424
CciI	TCATGA	1 cut(s)	1608
CfoI	GCGC	2 cut(s)	310, 853
Cfr10I	RCCGGY	3 cut(s)	16, 556, 588
Cfr13I	GGNCC	5 cut(s)	202, 245, 317, 389, 1364
Cfr42I	CCGCGG	2 cut(s)	857, 870
CpoI	CGGWCCG	1 cut(s)	202
CseI	GACGC	1 cut(s)	1420
Csp6I	GTAC	6 cut(s)	54, 605, 799, 1025, 1702, 1755
CspI	CGGWCCG	1 cut(s)	202
CviAII	CATG	9 cut(s)	242, 1084, 1166, 1234, 1265, 1361, 1379, 1609, 1838
CviQI	GTAC	6 cut(s)	54, 605, 799, 1025, 1702, 1755
DdeI	CTNAG	9 cut(s)	62, 213, 444, 693, 1020, 1184, 1614, 1697, 1875
DpnI	GATC	5 cut(s)	84, 752, 889, 1146, 1164
DpnII	GATC	5 cut(s)	82, 750, 887, 1144, 1162
DrdI	GACNNNNNNGTC	1 cut(s)	196
DseDI	GACNNNNNNGTC	1 cut(s)	196
EaeI	YGGCCR	2 cut(s)	69, 928
Eam1104I	CTCTTC	3 cut(s)	567, 928, 1088
EarI	CTCTTC	3 cut(s)	567, 928, 1088
Eco130I	CCWWGG	3 cut(s)	241, 1083, 1378
Eco31I	GGTCTC	2 cut(s)	155, 266
Eco47I	GGWCC	3 cut(s)	202, 389, 1364
Eco57I	CTGAAG	1 cut(s)	1812
EcoRII	CCWGG	2 cut(s)	176, 423
EcoT14I	CCWWGG	3 cut(s)	241, 1083, 1378
ErhI	CCWWGG	3 cut(s)	241, 1083, 1378
Esp3I	CGTCTC	2 cut(s)	1200, 1438
FaeI	CATG	9 cut(s)	245, 1087, 1169, 1237, 1268, 1364, 1382, 1612, 1841
FaqI	GGGAC	7 cut(s)	249, 487, 703, 863, 1051, 1060, 1350
FatI	CATG	9 cut(s)	241, 1083, 1165, 1233, 1264, 1360, 1378, 1608, 1837
FauI	CCCGC	4 cut(s)	255, 616, 656, 874
FbaI	TGATCA	1 cut(s)	1144
FblI	GTMKAC	1 cut(s)	1626
Fnu4HI	GCNGC	9 cut(s)	72, 136, 251, 656, 854, 1062, 1332, 1577, 1778
FokI	GGATG	2 cut(s)	449, 1874
Fsp4HI	GCNGC	9 cut(s)	72, 136, 251, 656, 854, 1062, 1332, 1577, 1778
FspBI	CTAG	2 cut(s)	123, 1521
GlaI	GCGC	2 cut(s)	309, 852
GluI	GCNGC	9 cut(s)	72, 136, 251, 656, 854, 1062, 1332, 1577, 1778
GsaI	CCCAGC	1 cut(s)	628
GsuI	CTGGAG	2 cut(s)	446, 1488
HaeIII	GGCC	8 cut(s)	20, 71, 135, 246, 318, 680, 930, 1780
HapII	CCGG	7 cut(s)	17, 228, 459, 474, 542, 557, 589
HgaI	GACGC	1 cut(s)	1420
HhaI	GCGC	2 cut(s)	310, 853
Hin1II	CATG	9 cut(s)	245, 1087, 1169, 1237, 1268, 1364, 1382, 1612, 1841
Hin6I	GCGC	2 cut(s)	308, 851
HinP1I	GCGC	2 cut(s)	308, 851
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	3 cut(s)	614, 1214, 1246
HinfI	GANTC	2 cut(s)	207, 237
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	7 cut(s)	17, 228, 459, 474, 542, 557, 589
HphI	GGTGA	2 cut(s)	473, 991
Hpy166II	GTNNAC	7 cut(s)	54, 340, 1171, 1549, 1627, 1645, 1668
Hpy188I	TCNGA	7 cut(s)	94, 119, 202, 447, 1120, 1438, 1731
Hpy188III	TCNNGA	8 cut(s)	25, 329, 398, 754, 1281, 1505, 1609, 1658
Hpy8I	GTNNAC	7 cut(s)	54, 340, 1171, 1549, 1627, 1645, 1668
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	8 cut(s)	31, 976, 1027, 1096, 1582, 1613, 1640, 1791
HpyCH4III	ACNGT	6 cut(s)	34, 570, 1114, 1672, 1711, 1759
HpyCH4IV	ACGT	2 cut(s)	143, 191
HpyF10VI	GCNNNNNNNGC	6 cut(s)	132, 1058, 1328, 1337, 1457, 1573
HpyF3I	CTNAG	9 cut(s)	62, 213, 444, 693, 1020, 1184, 1614, 1697, 1875
HpySE526I	ACGT	2 cut(s)	143, 191
Hsp92II	CATG	9 cut(s)	245, 1087, 1169, 1237, 1268, 1364, 1382, 1612, 1841
HspAI	GCGC	2 cut(s)	308, 851
KpnI	GGTACC	2 cut(s)	608, 1705
KroI	GCCGGC	1 cut(s)	556
KroNI	GCCGGC	1 cut(s)	558
Ksp22I	TGATCA	1 cut(s)	1144
KspAI	GTTAAC	1 cut(s)	340
KspI	CCGCGG	2 cut(s)	857, 870
Kzo9I	GATC	5 cut(s)	82, 750, 887, 1144, 1162
LguI	GCTCTTC	1 cut(s)	567
LmnI	GCTCC	5 cut(s)	737, 1507, 1573, 1597, 1813
Lsp1109I	GCAGC	4 cut(s)	237, 667, 1318, 1563
LweI	GCATC	1 cut(s)	1022
MaeI	CTAG	2 cut(s)	123, 1521
MaeII	ACGT	2 cut(s)	143, 191
MaeIII	GTNAC	8 cut(s)	154, 187, 208, 216, 1108, 1510, 1528, 1795
MalI	GATC	5 cut(s)	84, 752, 889, 1146, 1164
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	5 cut(s)	82, 750, 887, 1144, 1162
MfeI	CAATTG	1 cut(s)	741
MhlI	GDGCHC	1 cut(s)	1504
MlsI	TGGCCA	1 cut(s)	930
MluCI	AATT	8 cut(s)	393, 465, 484, 741, 768, 841, 1127, 1297
MluI	ACGCGT	1 cut(s)	220
MluNI	TGGCCA	1 cut(s)	930
MlyI	GAGTC	2 cut(s)	216, 231
MmeI	TCCRAC	6 cut(s)	109, 117, 180, 414, 528, 1619
Mox20I	TGGCCA	1 cut(s)	930
MroNI	GCCGGC	1 cut(s)	556
MroXI	GAANNNNTTC	1 cut(s)	1725
MscI	TGGCCA	1 cut(s)	930
MseI	TTAA	4 cut(s)	339, 480, 528, 1131
MslI	CAYNNNNRTG	4 cut(s)	1088, 1238, 1359, 1750
Msp20I	TGGCCA	1 cut(s)	930
MspA1I	CMGCKG	4 cut(s)	250, 658, 856, 869
MspI	CCGG	7 cut(s)	17, 228, 459, 474, 542, 557, 589
MspR9I	CCNGG	5 cut(s)	178, 228, 425, 475, 542
MunI	CAATTG	1 cut(s)	741
Mva1269I	GAATGC	2 cut(s)	916, 979
MvaI	CCWGG	2 cut(s)	178, 425
MvnI	CGCG	5 cut(s)	222, 308, 856, 869, 1431
MwoI	GCNNNNNNNGC	6 cut(s)	132, 1058, 1328, 1337, 1457, 1573
NaeI	GCCGGC	1 cut(s)	558
NciI	CCSGG	3 cut(s)	228, 475, 542
NcoI	CCATGG	3 cut(s)	241, 1083, 1378
NdeII	GATC	5 cut(s)	82, 750, 887, 1144, 1162
NgoMIV	GCCGGC	1 cut(s)	556
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	9 cut(s)	245, 1087, 1169, 1237, 1268, 1364, 1382, 1612, 1841
NlaIV	GGNNCC	7 cut(s)	390, 606, 637, 1179, 1366, 1593, 1703
NmeAIII	GCCGAG	1 cut(s)	243
NmuCI	GTSAC	6 cut(s)	154, 187, 208, 1108, 1510, 1795
NspI	RCATGY	1 cut(s)	1237
NspV	TTCGAA	1 cut(s)	908
PagI	TCATGA	1 cut(s)	1608
PciSI	GCTCTTC	1 cut(s)	567
PctI	GAATGC	2 cut(s)	916, 979
PdiI	GCCGGC	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	1725
PflFI	GACNNNGTC	1 cut(s)	206
PfoI	TCCNGGA	2 cut(s)	176, 540
PkrI	GCNGC	9 cut(s)	73, 137, 252, 657, 855, 1063, 1333, 1578, 1779
PleI	GAGTC	2 cut(s)	215, 231
PpsI	GAGTC	2 cut(s)	215, 231
PshAI	GACNNNNGTC	1 cut(s)	32
PsiI	TTATAA	1 cut(s)	585
Psp6I	CCWGG	2 cut(s)	176, 423
PspFI	CCCAGC	1 cut(s)	624
PspGI	CCWGG	2 cut(s)	176, 423
PspN4I	GGNNCC	7 cut(s)	390, 606, 637, 1179, 1366, 1593, 1703
PspPI	GGNCC	5 cut(s)	202, 245, 317, 389, 1364
PstI	CTGCAG	1 cut(s)	357
PstNI	CAGNNNCTG	2 cut(s)	106, 424
PsyI	GACNNNGTC	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	6 cut(s)	55, 606, 800, 1026, 1703, 1756
RsaNI	GTAC	6 cut(s)	54, 605, 799, 1025, 1702, 1755
RseI	CAYNNNNRTG	4 cut(s)	1088, 1238, 1359, 1750
Rsr2I	CGGWCCG	1 cut(s)	202
RsrII	CGGWCCG	1 cut(s)	202
SacII	CCGCGG	2 cut(s)	857, 870
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	4 cut(s)	339, 480, 528, 1131
SatI	GCNGC	9 cut(s)	72, 136, 251, 656, 854, 1062, 1332, 1577, 1778
Sau3AI	GATC	5 cut(s)	82, 750, 887, 1144, 1162
Sau96I	GGNCC	5 cut(s)	202, 245, 317, 389, 1364
SchI	GAGTC	2 cut(s)	216, 231
ScrFI	CCNGG	5 cut(s)	178, 228, 425, 475, 542
SduI	GDGCHC	1 cut(s)	1504
SfaNI	GCATC	1 cut(s)	1022
SfcI	CTRYAG	1 cut(s)	353
Sfr303I	CCGCGG	2 cut(s)	857, 870
SfuI	TTCGAA	1 cut(s)	908
SgrBI	CCGCGG	2 cut(s)	857, 870
SinI	GGWCC	3 cut(s)	202, 389, 1364
SmiMI	CAYNNNNRTG	4 cut(s)	1088, 1238, 1359, 1750
SmlI	CTYRAG	2 cut(s)	1688, 1831
SmoI	CTYRAG	2 cut(s)	1688, 1831
SpeI	ACTAGT	1 cut(s)	1520
Sse9I	AATT	8 cut(s)	393, 465, 484, 741, 768, 841, 1127, 1297
SspMI	CTAG	2 cut(s)	123, 1521
StyD4I	CCNGG	5 cut(s)	176, 226, 423, 473, 540
StyI	CCWWGG	3 cut(s)	241, 1083, 1378
TaaI	ACNGT	6 cut(s)	34, 570, 1114, 1672, 1711, 1759
TaiI	ACGT	2 cut(s)	146, 194
TaqI	TCGA	6 cut(s)	140, 470, 565, 908, 1657, 1713
TaqII	GACCGA	2 cut(s)	219, 248
TasI	AATT	8 cut(s)	393, 465, 484, 741, 768, 841, 1127, 1297
TatI	WGTACW	3 cut(s)	53, 798, 1754
TauI	GCSGC	5 cut(s)	74, 138, 856, 1064, 1780
Tru1I	TTAA	4 cut(s)	339, 480, 528, 1131
Tru9I	TTAA	4 cut(s)	339, 480, 528, 1131
TscAI	CASTG	3 cut(s)	37, 217, 1095
TseFI	GTSAC	6 cut(s)	154, 187, 208, 1108, 1510, 1795
TseI	GCWGC	4 cut(s)	250, 655, 1331, 1576
Tsp45I	GTSAC	6 cut(s)	154, 187, 208, 1108, 1510, 1795
TspDTI	ATGAA	4 cut(s)	17, 1140, 1437, 1863
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	3 cut(s)	37, 217, 1095
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	3 cut(s)	202, 389, 1364
XapI	RAATTY	2 cut(s)	465, 1127
XceI	RCATGY	1 cut(s)	1237
XcmI	CCANNNNNNNNNTGG	2 cut(s)	37, 82
XmiI	GTMKAC	1 cut(s)	1626
XmnI	GAANNNNTTC	1 cut(s)	1725
XspI	CTAG	2 cut(s)	123, 1521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.