Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002683

Physical Location & Seq

Genomic Coordinates Reverse (-)

36112286 .. 36116022

Gene Structure 3737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG296200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1914 bp

ATGAAGCCTCCAAAACCGGCCTTCACGACCACTGTCTTGGTGGTGTTGTGTACTTGTCTCAGCTTGGCCGCCAGCTACGATCTGGCTTCCGACAGACAGGCTCTGTTGAGTTTCCGAGCTAGCGTTGGAGGCCGCTCGACGTTTTGGAATGTGACGGAGACCAACCCGTGTTCCTGGACTGGTGTGACGTGCGTGTCGGACCGAGTCACTGAGTTACGCGCTCCCGGTTGGGGACTCCATGGCCCGCTGCCTCTCGGTCTCGGCAACTTGACCAAACTCCAAGCCCTGTCTCTCCGCAAAAACGCGCTTTACGGCCCAATACCTCCCGACTTTGTTAACCTCGTCAATATGCAGAACCTCTACTTGACAGGTAACAGGTTTTCGGGTCCAATTCCTGACTTTATCTTCGGTTTGCAGAGCCTGGAGAGGTTGGATGTCTCTCAGAATAAGTTTTCCGGTGAAATTTCGACCGGGTTTAATAATTTGACGAAGTTGGTGTCCCTGCATTTGGAGGAGAACCAGCTTAATGGGTCAATCCCGGAGTTGGATATGCCCGCTCTTGGACAGTTCAATGTATCTTATAACCGGCTAAACGGGTCGGTACCCTCAAAGCTTTCCAGCTGGCCGGTGGGTGCCTTTGCAGGGAACTTGCAGCTGTGCGGGAAGCCGATGCCGGCCTGTAATGGGACTGAGATTGGGAGTGGGAGTGAGAGTGGGAGTAAGAAGAAGTTGTCAGGTGGAGCAATTGCAGGGATCGTGATAGGTTGCGTAATTGGATTTTTTATCATTGTTGCCATTTTGTACTTCTTGTGTGGAAGAAAGAAAAATGGGGAAAGGGGTGCTAATTATGTTGCGCCGCGGAGTGTTCCCGCGGTTGAAGTCCCAAAGAGATCATTGGATTCCGAGAGTTCGAATGCTGATTACTCTTCTGGCCAAAAAAGGAGCGTGAGTAGTAAGAACTTGGTGTTTTTTGGGAATGCGGTGAAGGTGTTTGATTTGGAGGATTTGTTGAGGGCATCGGCTGAGGTACTTGGGAAGGGGACTTTCGGGACGGCGTATAAGGCGGCTTTGGAAACGGGGGTGGCCATGGCAGTGAAGAGGTTGAAGGAAGTGACTGTATCGGATAATGAATTTAAGGAGAAGATTGATCAGATTGGGAATATGGATCATGTGAACTTGGTGCCACTCAGGGCTTACTATTATAGCAGAGACGAGAAGCTTCTGGTTTATGATTACATGCCTATGGGAAGCTTGTCTGCTCTTTTACATGGAAACAGAGGCTCTGGAAGAACTCCATTGAATTGGGAAACAAGGTGTGGCATTGCTGTCGGAGCTGCTCGTGCAATCACATACTTGCACTCTCATGGTCCCACAATCTCCCATGGAAACATCAAATCTTCAAACATTCTTCTCACTTCGTCTTATGAAGCTCGCGTCTCTGACTTTTGCCTTGCTCATTTTGCAAGCCCAACCGCTACTCCCAACCGCATTTCTGGTTATCGTGCTCCAGAAGTCACAGATACTAGTAAAGTAACCCAAAAGGCAGATGTTTACAGCTTTGGTGTGTTGCTATTGGAGCTGCTTACAGGGAAGCCTCCAACCCAATCCCTCATGACTGAGGAAGGAGTAGACCTTCCAAGATGGGTTCACTCTGTTGTTCGAGAGGAGTGGACTGTGGAGGTGTTTGACCTTGAGCTTCTCAGGTACCAGAGTGTCGAAGATGAAATGGTTCAGATTTTACAGATTGCACTTGAATGTACTGTTCAGTACCCTGATAAGCGGCCTTCAATGGCTGAAGTGACTAGCCAGATTGAGGAGCTTTATAGTGCCAGCTTGAAGCATGGACAAGATGAAAATCAGGTGGATGATGGGATTTCTCAGCAGTATTTCTTAACTGACACACACATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097305 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

637

Amino Acids

69.45

Weight (kDa)

6.45

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 64	3.1e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	83 - 175	3.7e-07	Leucine-rich repeat region
PK_Tyr_Ser-Thr	PF07714	342 - 603	3.6e-34	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	342 - 601	3.2e-34	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48480
fragaria_vesca	FvH4_2g12190 FvH4_2g12190 FvH4_5g17570
malus_domestica	MD02G1259100.v1.1 MD06G1231600.v1.1 MD09G1086600.v1.1 MD09G1271200.v1.1 MD14G1238300.v1.1 MD17G1269300.v1.1
prunus_persica	Prupe.3G017300_v2.0.a1 Prupe.5G235500_v2.0.a1
pyrus_communis	pycom06g20550 pycom09g18220 pycom14g19950 pycom17g26800
rosa_chinensis	RchiOBHm_Chr3g0491091 RchiOBHm_Chr7g0178081
rosa_laevigata	RLG00000005473 RLG00000022865
rosa_multiflora	Rmu_co8170494.1_g000001 Rmu_co8379533.1_g000001 Rmu_co8445967.1_g000001 Rmu_sc0000425.1_g000007 Rmu_sc0005038.1_g000014 Rmu_ssc0000386.1_g000061 Rmu_ssc0000386.1_g000063
rosa_roxburghii	Rroxscaffold_6G00393220
rosa_rugosa	Rorug03G0246000 Rorug06G0413300
rosa_samantha	Rh3AG296200 Rh3BG332200 Rh3CG329300 Rh3DG329900 Rh7AG012600 Rh7BG012500 Rh7CG012500 Rh7DG012800
rosa_wichuraiana	Rw3G026140 Rw7G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
AasI	GACNNNNNNGTC	1 cut(s)	193
Acc65I	GGTACC	2 cut(s)	601, 1704
AccB1I	GGYRCC	4 cut(s)	601, 632, 1180, 1704
AccBSI	CCGCTC	2 cut(s)	135, 557
AccI	GTMKAC	1 cut(s)	1629
AccII	CGCG	5 cut(s)	219, 305, 859, 872, 1434
AclWI	GGATC	2 cut(s)	761, 1173
AcoI	YGGCCR	4 cut(s)	66, 623, 931, 1083
AcsI	RAATTY	2 cut(s)	462, 1130
AcuI	CTGAAG	1 cut(s)	1815
AfaI	GTAC	7 cut(s)	52, 603, 803, 1029, 1706, 1759, 1769
AfiI	CCNNNNNNNGG	7 cut(s)	230, 508, 544, 560, 642, 684, 1813
AgsI	TTSAA	8 cut(s)	571, 878, 1105, 1300, 1401, 1754, 1788, 1837
AhlI	ACTAGT	1 cut(s)	1523
AjiI	CACGTC	1 cut(s)	189
AjnI	CCWGG	2 cut(s)	173, 420
Alw21I	GWGCWC	1 cut(s)	1507
Alw26I	GTCTC	7 cut(s)	62, 152, 263, 294, 442, 1203, 1441
AlwI	GGATC	2 cut(s)	761, 1173
AlwNI	CAGNNNCTG	2 cut(s)	103, 421
ApeKI	GCWGC	4 cut(s)	247, 652, 1334, 1579
ApoI	RAATTY	2 cut(s)	462, 1130
ArsI	GACNNNNNNTTYG	4 cut(s)	389, 421, 482, 514
Asp700I	GAANNNNTTC	1 cut(s)	1728
Asp718I	GGTACC	2 cut(s)	601, 1704
AspLEI	GCGC	3 cut(s)	221, 307, 856
AspS9I	GGNCC	5 cut(s)	199, 242, 314, 386, 1367
AsuC2I	CCSGG	3 cut(s)	225, 472, 539
AsuHPI	GGTGA	2 cut(s)	470, 994
AsuII	TTCGAA	1 cut(s)	911
AsuNHI	GCTAGC	1 cut(s)	119
AvaII	GGWCC	3 cut(s)	199, 386, 1367
BaeI	ACNNNNGTAYC	2 cut(s)	1696, 1729
BalI	TGGCCA	2 cut(s)	933, 1085
BanI	GGYRCC	4 cut(s)	601, 632, 1180, 1704
BauI	CACGAG	1 cut(s)	1338
Bbv12I	GWGCWC	1 cut(s)	1507
BbvCI	CCTCAGC	1 cut(s)	1023
BbvI	GCAGC	4 cut(s)	234, 664, 1321, 1566
BccI	CCATC	2 cut(s)	1635, 1862
BceAI	ACGGC	2 cut(s)	328, 1068
BcgI	CGANNNNNNTGC	2 cut(s)	1309, 1343
BciT130I	CCWGG	2 cut(s)	175, 422
BclI	TGATCA	1 cut(s)	1147
BcnI	CCSGG	3 cut(s)	225, 472, 539
BcoDI	GTCTC	7 cut(s)	62, 152, 263, 294, 442, 1203, 1441
BcuI	ACTAGT	1 cut(s)	1523
BfaI	CTAG	3 cut(s)	120, 1524, 1803
BisI	GCNGC	9 cut(s)	69, 133, 248, 653, 857, 1065, 1335, 1580, 1781
BlsI	GCNGC	9 cut(s)	70, 134, 249, 654, 858, 1066, 1336, 1581, 1782
Bme1390I	CCNGG	5 cut(s)	175, 225, 422, 472, 539
Bme18I	GGWCC	3 cut(s)	199, 386, 1367
BmgBI	CACGTC	1 cut(s)	189
BmgT120I	GGNCC	5 cut(s)	199, 242, 314, 386, 1367
BmiI	GGNNCC	6 cut(s)	387, 603, 634, 1182, 1369, 1706
BmrFI	CCNGG	5 cut(s)	175, 225, 422, 472, 539
BmsI	GCATC	2 cut(s)	660, 1025
BmtI	GCTAGC	1 cut(s)	123
BoxI	GACNNNNGTC	1 cut(s)	32
BpmI	CTGGAG	2 cut(s)	443, 1491
Bpu10I	CCTNAGC	1 cut(s)	1023
Bpu14I	TTCGAA	1 cut(s)	911
BpuEI	CTTGAG	1 cut(s)	1712
BpuMI	CCSGG	3 cut(s)	225, 472, 539
BsaBI	GATNNNNATC	1 cut(s)	1854
BsaI	GGTCTC	2 cut(s)	152, 263
BsaJI	CCNNGG	5 cut(s)	238, 857, 870, 1086, 1381
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	7 cut(s)	230, 508, 544, 560, 642, 684, 1813
Bse118I	RCCGGY	4 cut(s)	16, 585, 625, 673
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	1320
Bse8I	GATNNNNATC	1 cut(s)	1854
BseBI	CCWGG	2 cut(s)	175, 422
BseDI	CCNNGG	5 cut(s)	238, 857, 870, 1086, 1381
BseGI	GGATG	2 cut(s)	439, 1870
BseJI	GATNNNNATC	1 cut(s)	1854
BseLI	CCNNNNNNNGG	7 cut(s)	230, 508, 544, 560, 642, 684, 1813
BseMI	GCAATG	1 cut(s)	1320
BseMII	CTCAG	9 cut(s)	73, 201, 455, 681, 1014, 1201, 1608, 1714, 1892
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	3 cut(s)	527, 1679, 1829
BseXI	GCAGC	4 cut(s)	234, 664, 1321, 1566
Bsh1236I	CGCG	5 cut(s)	219, 305, 859, 872, 1434
Bsh1285I	CGRYCG	1 cut(s)	471
BshNI	GGYRCC	4 cut(s)	601, 632, 1180, 1704
BsiEI	CGRYCG	1 cut(s)	471
BsiHKAI	GWGCWC	1 cut(s)	1507
BsiSI	CCGG	8 cut(s)	17, 225, 456, 471, 539, 586, 626, 674
BslFI	GGGAC	7 cut(s)	246, 484, 700, 866, 1054, 1063, 1353
BslI	CCNNNNNNNGG	7 cut(s)	230, 508, 544, 560, 642, 684, 1813
BsmAI	GTCTC	7 cut(s)	62, 152, 263, 294, 442, 1203, 1441
BsmBI	CGTCTC	2 cut(s)	1203, 1441
BsmFI	GGGAC	7 cut(s)	246, 484, 700, 866, 1054, 1063, 1353
BsmI	GAATGC	2 cut(s)	919, 982
Bso31I	GGTCTC	2 cut(s)	152, 263
Bsp119I	TTCGAA	1 cut(s)	911
Bsp1286I	GDGCHC	1 cut(s)	1507
Bsp143I	GATC	5 cut(s)	79, 753, 890, 1147, 1165
Bsp19I	CCATGG	3 cut(s)	238, 1086, 1381
BspCNI	CTCAG	9 cut(s)	72, 202, 454, 682, 1015, 1200, 1609, 1713, 1891
BspFNI	CGCG	5 cut(s)	219, 305, 859, 872, 1434
BspHI	TCATGA	1 cut(s)	1611
BspLI	GGNNCC	6 cut(s)	387, 603, 634, 1182, 1369, 1706
BspOI	GCTAGC	1 cut(s)	123
BspPI	GGATC	2 cut(s)	761, 1173
BspT104I	TTCGAA	1 cut(s)	911
BspT107I	GGYRCC	4 cut(s)	601, 632, 1180, 1704
BspTNI	GGTCTC	2 cut(s)	152, 263
BsrBI	CCGCTC	2 cut(s)	135, 557
BsrDI	GCAATG	1 cut(s)	1320
BsrFI	RCCGGY	4 cut(s)	16, 585, 625, 673
BsrI	ACTGG	1 cut(s)	184
BssAI	RCCGGY	4 cut(s)	16, 585, 625, 673
BssECI	CCNNGG	5 cut(s)	238, 857, 870, 1086, 1381
BssMI	GATC	5 cut(s)	79, 753, 890, 1147, 1165
BssSI	CACGAG	1 cut(s)	1338
BssT1I	CCWWGG	3 cut(s)	238, 1086, 1381
Bst2BI	CACGAG	1 cut(s)	1338
Bst2UI	CCWGG	2 cut(s)	175, 422
Bst4CI	ACNGT	5 cut(s)	34, 567, 1117, 1675, 1762
Bst6I	CTCTTC	2 cut(s)	931, 1091
BstBI	TTCGAA	1 cut(s)	911
BstC8I	GCNNGC	9 cut(s)	73, 121, 245, 555, 623, 675, 1432, 1465, 1831
BstDEI	CTNAG	9 cut(s)	59, 210, 441, 690, 1023, 1187, 1617, 1700, 1878
BstDSI	CCRYGG	5 cut(s)	238, 857, 870, 1086, 1381
BstF5I	GGATG	2 cut(s)	439, 1870
BstFNI	CGCG	5 cut(s)	219, 305, 859, 872, 1434
BstHHI	GCGC	3 cut(s)	221, 307, 856
BstKTI	GATC	5 cut(s)	82, 756, 893, 1150, 1168
BstMAI	GTCTC	7 cut(s)	62, 152, 263, 294, 442, 1203, 1441
BstMBI	GATC	5 cut(s)	79, 753, 890, 1147, 1165
BstMCI	CGRYCG	1 cut(s)	471
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 1061, 1331, 1340, 1460, 1576
BstNI	CCWGG	2 cut(s)	175, 422
BstNSI	RCATGY	1 cut(s)	1240
BstPAI	GACNNNNGTC	1 cut(s)	32
BstSCI	CCNGG	5 cut(s)	173, 223, 420, 470, 537
BstUI	CGCG	5 cut(s)	219, 305, 859, 872, 1434
BstV1I	GCAGC	4 cut(s)	234, 664, 1321, 1566
BstXI	CCANNNNNNTGG	3 cut(s)	37, 527, 1302
BtgI	CCRYGG	5 cut(s)	238, 857, 870, 1086, 1381
BtrI	CACGTC	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	439, 1870
BtsI	GCAGTG	1 cut(s)	1098
BtsIMutI	CAGTG	3 cut(s)	30, 207, 1098
Cac8I	GCNNGC	9 cut(s)	73, 121, 245, 555, 623, 675, 1432, 1465, 1831
CaiI	CAGNNNCTG	2 cut(s)	103, 421
CciI	TCATGA	1 cut(s)	1611
CfoI	GCGC	3 cut(s)	221, 307, 856
Cfr10I	RCCGGY	4 cut(s)	16, 585, 625, 673
Cfr13I	GGNCC	5 cut(s)	199, 242, 314, 386, 1367
Cfr42I	CCGCGG	2 cut(s)	860, 873
CpoI	CGGWCCG	1 cut(s)	199
CseI	GACGC	1 cut(s)	1423
Csp6I	GTAC	7 cut(s)	51, 602, 802, 1028, 1705, 1758, 1768
CspI	CGGWCCG	1 cut(s)	199
CviAII	CATG	9 cut(s)	239, 1087, 1169, 1237, 1268, 1364, 1382, 1612, 1841
CviQI	GTAC	7 cut(s)	51, 602, 802, 1028, 1705, 1758, 1768
DdeI	CTNAG	9 cut(s)	59, 210, 441, 690, 1023, 1187, 1617, 1700, 1878
DpnI	GATC	5 cut(s)	81, 755, 892, 1149, 1167
DpnII	GATC	5 cut(s)	79, 753, 890, 1147, 1165
DrdI	GACNNNNNNGTC	1 cut(s)	193
DseDI	GACNNNNNNGTC	1 cut(s)	193
EaeI	YGGCCR	4 cut(s)	66, 623, 931, 1083
Eam1104I	CTCTTC	2 cut(s)	931, 1091
EarI	CTCTTC	2 cut(s)	931, 1091
Eco130I	CCWWGG	3 cut(s)	238, 1086, 1381
Eco31I	GGTCTC	2 cut(s)	152, 263
Eco47I	GGWCC	3 cut(s)	199, 386, 1367
Eco57I	CTGAAG	1 cut(s)	1815
EcoRII	CCWGG	2 cut(s)	173, 420
EcoT14I	CCWWGG	3 cut(s)	238, 1086, 1381
ErhI	CCWWGG	3 cut(s)	238, 1086, 1381
Esp3I	CGTCTC	2 cut(s)	1203, 1441
FaeI	CATG	9 cut(s)	242, 1090, 1172, 1240, 1271, 1367, 1385, 1615, 1844
FaqI	GGGAC	7 cut(s)	246, 484, 700, 866, 1054, 1063, 1353
FatI	CATG	9 cut(s)	238, 1086, 1168, 1236, 1267, 1363, 1381, 1611, 1840
FauI	CCCGC	4 cut(s)	252, 562, 653, 877
FbaI	TGATCA	1 cut(s)	1147
FblI	GTMKAC	1 cut(s)	1629
Fnu4HI	GCNGC	9 cut(s)	69, 133, 248, 653, 857, 1065, 1335, 1580, 1781
FokI	GGATG	2 cut(s)	446, 1877
Fsp4HI	GCNGC	9 cut(s)	69, 133, 248, 653, 857, 1065, 1335, 1580, 1781
FspBI	CTAG	3 cut(s)	120, 1524, 1803
GlaI	GCGC	3 cut(s)	220, 306, 855
GluI	GCNGC	9 cut(s)	69, 133, 248, 653, 857, 1065, 1335, 1580, 1781
GsuI	CTGGAG	2 cut(s)	443, 1491
HapII	CCGG	8 cut(s)	17, 225, 456, 471, 539, 586, 626, 674
HgaI	GACGC	1 cut(s)	1423
HhaI	GCGC	3 cut(s)	221, 307, 856
Hin1II	CATG	9 cut(s)	242, 1090, 1172, 1240, 1271, 1367, 1385, 1615, 1844
Hin6I	GCGC	3 cut(s)	219, 305, 854
HinP1I	GCGC	3 cut(s)	219, 305, 854
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	3 cut(s)	611, 1217, 1249
HinfI	GANTC	3 cut(s)	204, 234, 899
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	8 cut(s)	17, 225, 456, 471, 539, 586, 626, 674
HphI	GGTGA	2 cut(s)	470, 994
Hpy166II	GTNNAC	7 cut(s)	51, 337, 1174, 1552, 1630, 1648, 1671
Hpy188III	TCNNGA	9 cut(s)	25, 326, 395, 757, 1048, 1284, 1508, 1612, 1661
Hpy8I	GTNNAC	7 cut(s)	51, 337, 1174, 1552, 1630, 1648, 1671
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	7 cut(s)	31, 979, 1030, 1099, 1616, 1643, 1794
HpyCH4III	ACNGT	5 cut(s)	34, 567, 1117, 1675, 1762
HpyCH4IV	ACGT	2 cut(s)	140, 188
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 1061, 1331, 1340, 1460, 1576
HpyF3I	CTNAG	9 cut(s)	59, 210, 441, 690, 1023, 1187, 1617, 1700, 1878
HpySE526I	ACGT	2 cut(s)	140, 188
Hsp92II	CATG	9 cut(s)	242, 1090, 1172, 1240, 1271, 1367, 1385, 1615, 1844
HspAI	GCGC	3 cut(s)	219, 305, 854
KpnI	GGTACC	2 cut(s)	605, 1708
KroI	GCCGGC	1 cut(s)	673
KroNI	GCCGGC	1 cut(s)	675
Ksp22I	TGATCA	1 cut(s)	1147
KspAI	GTTAAC	1 cut(s)	337
KspI	CCGCGG	2 cut(s)	860, 873
Kzo9I	GATC	5 cut(s)	79, 753, 890, 1147, 1165
LmnI	GCTCC	7 cut(s)	226, 740, 942, 1331, 1510, 1576, 1816
Lsp1109I	GCAGC	4 cut(s)	234, 664, 1321, 1566
LweI	GCATC	2 cut(s)	660, 1025
MaeI	CTAG	3 cut(s)	120, 1524, 1803
MaeII	ACGT	2 cut(s)	140, 188
MaeIII	GTNAC	9 cut(s)	151, 184, 205, 213, 371, 1111, 1513, 1531, 1798
MalI	GATC	5 cut(s)	81, 755, 892, 1149, 1167
MbiI	CCGCTC	2 cut(s)	135, 557
MboI	GATC	5 cut(s)	79, 753, 890, 1147, 1165
MfeI	CAATTG	1 cut(s)	744
MhlI	GDGCHC	1 cut(s)	1507
MlsI	TGGCCA	2 cut(s)	933, 1085
MluCI	AATT	8 cut(s)	390, 462, 481, 744, 771, 844, 1130, 1300
MluNI	TGGCCA	2 cut(s)	933, 1085
MlyI	GAGTC	2 cut(s)	213, 228
MmeI	TCCRAC	7 cut(s)	106, 114, 177, 411, 525, 1309, 1622
Mox20I	TGGCCA	2 cut(s)	933, 1085
MroNI	GCCGGC	1 cut(s)	673
MroXI	GAANNNNTTC	1 cut(s)	1728
MscI	TGGCCA	2 cut(s)	933, 1085
MseI	TTAA	5 cut(s)	336, 477, 525, 1134, 1892
MslI	CAYNNNNRTG	4 cut(s)	1091, 1241, 1362, 1753
Msp20I	TGGCCA	2 cut(s)	933, 1085
MspA1I	CMGCKG	5 cut(s)	247, 621, 655, 859, 872
MspI	CCGG	8 cut(s)	17, 225, 456, 471, 539, 586, 626, 674
MspR9I	CCNGG	5 cut(s)	175, 225, 422, 472, 539
MunI	CAATTG	1 cut(s)	744
Mva1269I	GAATGC	2 cut(s)	919, 982
MvaI	CCWGG	2 cut(s)	175, 422
MvnI	CGCG	5 cut(s)	219, 305, 859, 872, 1434
MwoI	GCNNNNNNNGC	6 cut(s)	129, 1061, 1331, 1340, 1460, 1576
NaeI	GCCGGC	1 cut(s)	675
NciI	CCSGG	3 cut(s)	225, 472, 539
NcoI	CCATGG	3 cut(s)	238, 1086, 1381
NdeII	GATC	5 cut(s)	79, 753, 890, 1147, 1165
NgoMIV	GCCGGC	1 cut(s)	673
NheI	GCTAGC	1 cut(s)	119
NlaIII	CATG	9 cut(s)	242, 1090, 1172, 1240, 1271, 1367, 1385, 1615, 1844
NlaIV	GGNNCC	6 cut(s)	387, 603, 634, 1182, 1369, 1706
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	6 cut(s)	151, 184, 205, 1111, 1513, 1798
NspI	RCATGY	1 cut(s)	1240
NspV	TTCGAA	1 cut(s)	911
PagI	TCATGA	1 cut(s)	1611
PctI	GAATGC	2 cut(s)	919, 982
PdiI	GCCGGC	1 cut(s)	675
PdmI	GAANNNNTTC	1 cut(s)	1728
PfeI	GAWTC	1 cut(s)	899
PflFI	GACNNNGTC	1 cut(s)	203
PfoI	TCCNGGA	2 cut(s)	173, 537
PkrI	GCNGC	9 cut(s)	70, 134, 249, 654, 858, 1066, 1336, 1581, 1782
PleI	GAGTC	2 cut(s)	212, 228
PpsI	GAGTC	2 cut(s)	212, 228
PshAI	GACNNNNGTC	1 cut(s)	32
PsiI	TTATAA	1 cut(s)	582
Psp6I	CCWGG	2 cut(s)	173, 420
PspGI	CCWGG	2 cut(s)	173, 420
PspN4I	GGNNCC	6 cut(s)	387, 603, 634, 1182, 1369, 1706
PspPI	GGNCC	5 cut(s)	199, 242, 314, 386, 1367
PstNI	CAGNNNCTG	2 cut(s)	103, 421
PsyI	GACNNNGTC	1 cut(s)	203
PvuII	CAGCTG	2 cut(s)	621, 655
RsaI	GTAC	7 cut(s)	52, 603, 803, 1029, 1706, 1759, 1769
RsaNI	GTAC	7 cut(s)	51, 602, 802, 1028, 1705, 1758, 1768
RseI	CAYNNNNRTG	4 cut(s)	1091, 1241, 1362, 1753
Rsr2I	CGGWCCG	1 cut(s)	199
RsrII	CGGWCCG	1 cut(s)	199
SacII	CCGCGG	2 cut(s)	860, 873
SaqAI	TTAA	5 cut(s)	336, 477, 525, 1134, 1892
SatI	GCNGC	9 cut(s)	69, 133, 248, 653, 857, 1065, 1335, 1580, 1781
Sau3AI	GATC	5 cut(s)	79, 753, 890, 1147, 1165
Sau96I	GGNCC	5 cut(s)	199, 242, 314, 386, 1367
SchI	GAGTC	2 cut(s)	213, 228
ScrFI	CCNGG	5 cut(s)	175, 225, 422, 472, 539
SduI	GDGCHC	1 cut(s)	1507
SfaNI	GCATC	2 cut(s)	660, 1025
Sfr303I	CCGCGG	2 cut(s)	860, 873
SfuI	TTCGAA	1 cut(s)	911
SgrBI	CCGCGG	2 cut(s)	860, 873
SinI	GGWCC	3 cut(s)	199, 386, 1367
SmiMI	CAYNNNNRTG	4 cut(s)	1091, 1241, 1362, 1753
SmlI	CTYRAG	1 cut(s)	1691
SmoI	CTYRAG	1 cut(s)	1691
SpeI	ACTAGT	1 cut(s)	1523
Sse9I	AATT	8 cut(s)	390, 462, 481, 744, 771, 844, 1130, 1300
SspMI	CTAG	3 cut(s)	120, 1524, 1803
StyD4I	CCNGG	5 cut(s)	173, 223, 420, 470, 537
StyI	CCWWGG	3 cut(s)	238, 1086, 1381
TaaI	ACNGT	5 cut(s)	34, 567, 1117, 1675, 1762
TaiI	ACGT	2 cut(s)	143, 191
TaqI	TCGA	5 cut(s)	137, 467, 911, 1660, 1716
TaqII	GACCGA	2 cut(s)	216, 245
TasI	AATT	8 cut(s)	390, 462, 481, 744, 771, 844, 1130, 1300
TatI	WGTACW	3 cut(s)	50, 801, 1757
TauI	GCSGC	5 cut(s)	71, 135, 859, 1067, 1783
TfiI	GAWTC	1 cut(s)	899
Tru1I	TTAA	5 cut(s)	336, 477, 525, 1134, 1892
Tru9I	TTAA	5 cut(s)	336, 477, 525, 1134, 1892
TscAI	CASTG	3 cut(s)	37, 214, 1098
TseFI	GTSAC	6 cut(s)	151, 184, 205, 1111, 1513, 1798
TseI	GCWGC	4 cut(s)	247, 652, 1334, 1579
Tsp45I	GTSAC	6 cut(s)	151, 184, 205, 1111, 1513, 1798
TspDTI	ATGAA	5 cut(s)	17, 1143, 1440, 1737, 1866
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	3 cut(s)	37, 214, 1098
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	3 cut(s)	199, 386, 1367
XapI	RAATTY	2 cut(s)	462, 1130
XceI	RCATGY	1 cut(s)	1240
XcmI	CCANNNNNNNNNTGG	3 cut(s)	37, 79, 625
XmiI	GTMKAC	1 cut(s)	1629
XmnI	GAANNNNTTC	1 cut(s)	1728
XspI	CTAG	3 cut(s)	120, 1524, 1803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.