Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002683

Physical Location & Seq

Genomic Coordinates Reverse (-)

55430115 .. 55432145

Gene Structure 2031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0413300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTTCTGCTTGTTGCCGCCTTATCTCAACTACCTCCTCAGCCACTGTTACCGCCATTTCCTCCTTCCCTCCAAAACCAAACCCCCCAATTTCAAATCACAACTCCAATCACCGCCGACTCACAAACCTCAGTCGCAGAGACCTTGCTCTGCTCTCCTTCATCACTCTCGTCCCTCCCCTCTCTCGACCCGACCCGGCTTTCGGATTCGGCATTTCAGGACCAAAGGATTGGCTCCGAGAGCAAAAGAAGAAGGCCTCAAGGTTCCTCTTGGCCCCAATCGATGCCTCTAGAGAGAGCCTCCTCGCGGCTCATCGATTACTCATGGATGATACGAATCAGGAGATAGAGGAGGTTCAGAGACTGTTCAGATCTGCCGCCAGGGATTGCGTTGTGGAAGACCGGAGTTCATTCATTGCGTTTCAAGCCGATACTGGTGTTGAGGTTTGCACATTCCGTCTGGTTGTAAAAAATGCTGCATCATTACTTGGTAATAAGGATCCTGTAAAATTGGAAGCGGAATCTATGCTCAACGATCTTATAAGATCATTCAGCTCTCTTAATGTATTGGTAAATGAGAGTGATGTTCAACTTGCCTCCCAAAGAAAGAAGGTAGCAGATTCACTCATGGATACCATATCATCCCTTGACAAATTTGAGCAGGGAATCAAGGACTGCCTTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

229

Amino Acids

25.26

Weight (kDa)

7.64

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48480
fragaria_vesca	FvH4_2g12190 FvH4_2g12190 FvH4_5g17570
malus_domestica	MD02G1259100.v1.1 MD06G1231600.v1.1 MD09G1086600.v1.1 MD09G1271200.v1.1 MD14G1238300.v1.1 MD17G1269300.v1.1
prunus_persica	Prupe.3G017300_v2.0.a1 Prupe.5G235500_v2.0.a1
pyrus_communis	pycom06g20550 pycom09g18220 pycom14g19950 pycom17g26800
rosa_chinensis	RchiOBHm_Chr3g0491091 RchiOBHm_Chr7g0178081
rosa_laevigata	RLG00000005473 RLG00000022865
rosa_multiflora	Rmu_co8170494.1_g000001 Rmu_co8379533.1_g000001 Rmu_co8445967.1_g000001 Rmu_sc0000425.1_g000007 Rmu_sc0005038.1_g000014 Rmu_ssc0000386.1_g000061 Rmu_ssc0000386.1_g000063
rosa_roxburghii	Rroxscaffold_6G00393220
rosa_rugosa	Rorug03G0246000 Rorug06G0413300
rosa_samantha	Rh3AG296200 Rh3BG332200 Rh3CG329300 Rh3DG329900 Rh7AG012600 Rh7BG012500 Rh7CG012500 Rh7DG012800
rosa_wichuraiana	Rw3G026140 Rw7G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	542
AccII	CGCG	1 cut(s)	308
AciI	CCGC	6 cut(s)	19, 54, 115, 308, 378, 518
AclWI	GGATC	2 cut(s)	494, 507
AcsI	RAATTY	1 cut(s)	653
AfiI	CCNNNNNNNGG	2 cut(s)	203, 307
AgsI	TTSAA	4 cut(s)	96, 425, 590, 683
AjnI	CCWGG	1 cut(s)	380
AluBI	AGCT	2 cut(s)	555, 686
AluI	AGCT	2 cut(s)	555, 686
Alw26I	GTCTC	2 cut(s)	135, 355
AlwI	GGATC	2 cut(s)	494, 507
AlwNI	CAGNNNCTG	2 cut(s)	47, 364
AoxI	GGCC	2 cut(s)	255, 273
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	653
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AspS9I	GGNCC	2 cut(s)	221, 274
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	221
BaeI	ACNNNNGTAYC	2 cut(s)	423, 456
BamHI	GGATCC	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	405
BbvCI	CCTCAGC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	463
BciT130I	CCWGG	1 cut(s)	382
BciVI	GTATCC	1 cut(s)	625
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	135, 355
BfaI	CTAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	625
BglII	AGATCT	1 cut(s)	371
BisI	GCNGC	4 cut(s)	19, 309, 378, 477
BlsI	GCNGC	4 cut(s)	20, 310, 379, 478
Bme1390I	CCNGG	2 cut(s)	197, 382
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	221, 274
BmiI	GGNNCC	4 cut(s)	236, 266, 276, 501
BmrFI	CCNGG	2 cut(s)	197, 382
BmsI	GCATC	2 cut(s)	274, 488
BpiI	GAAGAC	1 cut(s)	405
BplI	GAGNNNNNCTC	2 cut(s)	285, 317
Bpu10I	CCTNAGC	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	197
Bsa29I	ATCGAT	2 cut(s)	282, 316
BsaBI	GATNNNNATC	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	381
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 307
Bse1I	ACTGG	1 cut(s)	439
Bse3DI	GCAATG	1 cut(s)	414
Bse8I	GATNNNNATC	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	382
BseCI	ATCGAT	2 cut(s)	282, 316
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	334, 641
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	2 cut(s)	203, 307
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	2 cut(s)	54, 145
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	3 cut(s)	28, 293, 365
BseXI	GCAGC	1 cut(s)	463
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	2 cut(s)	257, 275
BshVI	ATCGAT	2 cut(s)	282, 316
BsiSI	CCGG	2 cut(s)	197, 403
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	203, 307
BsmAI	GTCTC	2 cut(s)	135, 355
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	257, 275
Bso31I	GGTCTC	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	371, 499, 535, 545
BspACI	CCGC	6 cut(s)	19, 54, 115, 308, 378, 518
BspANI	GGCC	2 cut(s)	257, 275
BspCNI	CTCAG	2 cut(s)	53, 144
BspDI	ATCGAT	2 cut(s)	282, 316
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	4 cut(s)	236, 266, 276, 501
BspPI	GGATC	2 cut(s)	494, 507
BspTNI	GGTCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	4 cut(s)	371, 499, 535, 545
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	2 cut(s)	49, 366
BstDEI	CTNAG	2 cut(s)	40, 131
BstF5I	GGATG	2 cut(s)	334, 641
BstFNI	CGCG	1 cut(s)	308
BstKTI	GATC	4 cut(s)	374, 502, 538, 548
BstMAI	GTCTC	2 cut(s)	135, 355
BstMBI	GATC	4 cut(s)	371, 499, 535, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 425
BstNI	CCWGG	1 cut(s)	382
BstSCI	CCNGG	2 cut(s)	195, 380
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	2 cut(s)	371, 499
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstYI	RGATCY	2 cut(s)	371, 499
Bsu15I	ATCGAT	2 cut(s)	282, 316
BsuI	GTATCC	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	257, 275
BsuTUI	ATCGAT	2 cut(s)	282, 316
BtsCI	GGATG	2 cut(s)	334, 641
BtsIMutI	CAGTG	1 cut(s)	45
CaiI	CAGNNNCTG	2 cut(s)	47, 364
Cfr13I	GGNCC	2 cut(s)	221, 274
ClaI	ATCGAT	2 cut(s)	282, 316
CviAII	CATG	2 cut(s)	325, 628
DdeI	CTNAG	2 cut(s)	40, 131
DpnI	GATC	4 cut(s)	373, 501, 537, 547
DpnII	GATC	4 cut(s)	371, 499, 535, 545
Eco147I	AGGCCT	1 cut(s)	257
Eco31I	GGTCTC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	380
FaeI	CATG	2 cut(s)	328, 631
FaiI	YATR	5 cut(s)	326, 527, 542, 629, 638
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	2 cut(s)	324, 627
Fnu4HI	GCNGC	4 cut(s)	19, 309, 378, 477
FokI	GGATG	2 cut(s)	341, 628
Fsp4HI	GCNGC	4 cut(s)	19, 309, 378, 477
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	4 cut(s)	19, 309, 378, 477
HaeIII	GGCC	2 cut(s)	257, 275
HapII	CCGG	2 cut(s)	197, 403
Hin1II	CATG	2 cut(s)	328, 631
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	6 cut(s)	120, 207, 337, 521, 620, 666
HpaII	CCGG	2 cut(s)	197, 403
HphI	GGTGA	1 cut(s)	104
Hpy188I	TCNGA	4 cut(s)	206, 239, 360, 371
Hpy188III	TCNNGA	4 cut(s)	186, 219, 291, 341
HpyAV	CCTTC	4 cut(s)	76, 169, 247, 604
HpyCH4III	ACNGT	2 cut(s)	49, 366
HpyCH4V	TGCA	2 cut(s)	450, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 425
HpyF3I	CTNAG	2 cut(s)	40, 131
Hsp92II	CATG	2 cut(s)	328, 631
Kzo9I	GATC	4 cut(s)	371, 499, 535, 545
LmnI	GCTCC	1 cut(s)	240
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	2 cut(s)	274, 488
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	4 cut(s)	373, 501, 537, 547
MboI	GATC	4 cut(s)	371, 499, 535, 545
MboII	GAAGA	2 cut(s)	262, 410
MflI	RGATCY	2 cut(s)	371, 499
MluCI	AATT	3 cut(s)	90, 509, 653
MlyI	GAGTC	1 cut(s)	114
MseI	TTAA	1 cut(s)	561
MspI	CCGG	2 cut(s)	197, 403
MspR9I	CCNGG	2 cut(s)	197, 382
MvaI	CCWGG	1 cut(s)	382
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	241, 425
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	4 cut(s)	371, 499, 535, 545
NlaIII	CATG	2 cut(s)	328, 631
NlaIV	GGNNCC	4 cut(s)	236, 266, 276, 501
PceI	AGGCCT	1 cut(s)	257
PfeI	GAWTC	5 cut(s)	207, 337, 521, 620, 666
PkrI	GCNGC	4 cut(s)	20, 310, 379, 478
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PsiI	TTATAA	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	4 cut(s)	236, 266, 276, 501
PspPI	GGNCC	2 cut(s)	221, 274
PstNI	CAGNNNCTG	2 cut(s)	47, 364
PsuI	RGATCY	2 cut(s)	371, 499
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	4 cut(s)	19, 309, 378, 477
Sau3AI	GATC	4 cut(s)	371, 499, 535, 545
Sau96I	GGNCC	2 cut(s)	221, 274
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	197, 382
SetI	ASST	9 cut(s)	38, 132, 147, 266, 357, 447, 557, 615, 688
SfaNI	GCATC	2 cut(s)	274, 488
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	3 cut(s)	90, 509, 653
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	6 cut(s)	19, 54, 115, 308, 378, 518
SspMI	CTAG	1 cut(s)	291
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	195, 380
TaaI	ACNGT	2 cut(s)	49, 366
TaqI	TCGA	3 cut(s)	187, 282, 316
TasI	AATT	3 cut(s)	90, 509, 653
TauI	GCSGC	3 cut(s)	21, 311, 380
TfiI	GAWTC	5 cut(s)	207, 337, 521, 620, 666
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	1 cut(s)	476
TspDTI	ATGAA	3 cut(s)	151, 399, 403
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	653
XbaI	TCTAGA	1 cut(s)	290
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.