Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004509

Physical Location & Seq

Genomic Coordinates Reverse (-)

9536245 .. 9536864

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1109700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGTCCGACGTCCCACTCATCGAAATCGCAGGAGAAGACGACTCGCTGCTTCAATTGACCCACGGTGACACCGTTTCAAGCAGCAGCACCAGCAAAATCTCCAAAGACGACGCCTTTTTCTTCTGCTCGCCTCTCCAAACCCGCAGATCCAAGCCACTCGAAGGTGTGGTGGTGAGTGAGAATTCCAAAAAGCCGAGTTCTACGCTTTGTAGAGAGAATGCGAATGCAAATAAAGAGAATACGGTTGCAAATAAATTAGAAGAGCAAAAACTCAGCCTCCTGCCGCAGCAAATGAAGAGGAAGAAGAAAGGGGGTGGATACAATTTGCGCAAAAGCCTTGCTTGGGATCGAGCCTTCTTTACCGATGAAGGTTTATATTTTGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.45

Weight (kDa)

7.73

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60150 AT5G60150
fragaria_vesca	FvH4_3g33790 FvH4_3g33790
malus_domestica	MD03G1109500.v1.1 MD03G1109700.v1.1 MD11G1122700.v1.1
prunus_persica	Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1
pyrus_communis	pycom03g08930 pycom11g10390
rosa_chinensis	RchiOBHm_Chr5g0061351 RchiOBHm_Chr5g0061361
rosa_laevigata	RLG00000035457 RLG00000035459 RLG00000035469
rosa_multiflora	Rmu_co8244331.1_g000001 Rmu_sc0000338.1_g000014 Rmu_sc0000689.1_g000017 Rmu_sc0033319.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019320 Rroxscaffold_1G00019330 Rroxscaffold_1G00019380
rosa_rugosa	Rorug05G0339600
rosa_samantha	Rh5AG401900 Rh5BG414000 Rh5CG438500 Rh5DG428600
rosa_wichuraiana	Rw5G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	15
Acc16I	TGCGCA	1 cut(s)	332
AciI	CCGC	2 cut(s)	145, 287
AclWI	GGATC	2 cut(s)	144, 357
AcsI	RAATTY	1 cut(s)	184
AcyI	GRCGYC	2 cut(s)	12, 114
AfiI	CCNNNNNNNGG	2 cut(s)	164, 346
AgsI	TTSAA	2 cut(s)	56, 81
AlwI	GGATC	2 cut(s)	144, 357
ApeKI	GCWGC	4 cut(s)	49, 84, 87, 289
ApoI	RAATTY	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	80, 187
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	4 cut(s)	36, 96, 99, 301
BciVI	GTATCC	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	5 cut(s)	50, 85, 88, 287, 290
BlsI	GCNGC	5 cut(s)	51, 86, 89, 288, 291
BpiI	GAAGAC	1 cut(s)	45
BsaHI	GRCGYC	2 cut(s)	12, 114
BsaJI	CCNNGG	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 346
BseDI	CCNNGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	2 cut(s)	164, 346
BseMII	CTCAG	1 cut(s)	289
BseXI	GCAGC	4 cut(s)	36, 96, 99, 301
BslI	CCNNNNNNNGG	2 cut(s)	164, 346
BsmI	GAATGC	2 cut(s)	226, 232
Bsp143I	GATC	2 cut(s)	149, 349
BspACI	CCGC	2 cut(s)	145, 287
BspCNI	CTCAG	1 cut(s)	288
BspPI	GGATC	2 cut(s)	144, 357
BspQI	GCTCTTC	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	2 cut(s)	149, 349
BssNI	GRCGYC	2 cut(s)	12, 114
Bst4CI	ACNGT	3 cut(s)	68, 76, 247
Bst6I	CTCTTC	2 cut(s)	258, 293
BstACI	GRCGYC	2 cut(s)	12, 114
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	2 cut(s)	152, 352
BstMBI	GATC	2 cut(s)	149, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstV1I	GCAGC	4 cut(s)	36, 96, 99, 301
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	314
BtgI	CCRYGG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	1 cut(s)	333
CseI	GACGC	1 cut(s)	122
CviJI	RGCY	5 cut(s)	157, 196, 279, 339, 356
CviKI_1	RGCY	5 cut(s)	157, 196, 279, 339, 356
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	2 cut(s)	151, 351
DpnII	GATC	2 cut(s)	149, 349
Eam1104I	CTCTTC	2 cut(s)	258, 293
EarI	CTCTTC	2 cut(s)	258, 293
EcoRI	GAATTC	1 cut(s)	184
FaiI	YATR	2 cut(s)	379, 391
FalI	AAGNNNNNCTT	2 cut(s)	328, 360
FauI	CCCGC	1 cut(s)	152
Fnu4HI	GCNGC	5 cut(s)	50, 85, 88, 287, 290
Fsp4HI	GCNGC	5 cut(s)	50, 85, 88, 287, 290
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	5 cut(s)	50, 85, 88, 287, 290
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	333
Hin1I	GRCGYC	2 cut(s)	12, 114
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HinfI	GANTC	2 cut(s)	5, 44
HphI	GGTGA	2 cut(s)	80, 187
Hpy188I	TCNGA	1 cut(s)	10
Hpy99I	CGWCG	2 cut(s)	14, 116
HpyAV	CCTTC	3 cut(s)	158, 365, 367
HpyCH4III	ACNGT	3 cut(s)	68, 76, 247
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	2 cut(s)	230, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	2 cut(s)	12, 114
HspAI	GCGC	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	149, 349
LguI	GCTCTTC	1 cut(s)	258
LpnPI	CCDG	3 cut(s)	18, 106, 296
Lsp1109I	GCAGC	4 cut(s)	36, 96, 99, 301
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	2 cut(s)	151, 351
MboI	GATC	2 cut(s)	149, 349
MboII	GAAGA	6 cut(s)	50, 115, 275, 310, 316, 319
MfeI	CAATTG	1 cut(s)	56
MflI	RGATCY	1 cut(s)	149
MluCI	AATT	4 cut(s)	56, 184, 257, 325
MlyI	GAGTC	2 cut(s)	14, 38
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	3 cut(s)	144, 290, 294
MunI	CAATTG	1 cut(s)	56
Mva1269I	GAATGC	2 cut(s)	226, 232
MwoI	GCNNNNNNNGC	1 cut(s)	93
NdeII	GATC	2 cut(s)	149, 349
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	68
NsbI	TGCGCA	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	2 cut(s)	226, 232
PkrI	GCNGC	5 cut(s)	51, 86, 89, 288, 291
PleI	GAGTC	2 cut(s)	13, 38
PpsI	GAGTC	2 cut(s)	13, 38
PsuI	RGATCY	1 cut(s)	149
SapI	GCTCTTC	1 cut(s)	258
SatI	GCNGC	5 cut(s)	50, 85, 88, 287, 290
Sau3AI	GATC	2 cut(s)	149, 349
SchI	GAGTC	2 cut(s)	14, 38
SetI	ASST	3 cut(s)	15, 169, 376
Sse9I	AATT	4 cut(s)	56, 184, 257, 325
SsiI	CCGC	2 cut(s)	145, 287
TaaI	ACNGT	3 cut(s)	68, 76, 247
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	3 cut(s)	24, 162, 352
TasI	AATT	4 cut(s)	56, 184, 257, 325
TauI	GCSGC	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	4 cut(s)	49, 84, 87, 289
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	311, 384
XapI	RAATTY	1 cut(s)	184
ZraI	GACGTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.