No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G60150 AT5G60150 |
| fragaria_vesca | FvH4_3g33790 FvH4_3g33790 |
| malus_domestica | MD03G1109500.v1.1 MD03G1109700.v1.1 MD11G1122700.v1.1 |
| prunus_persica | Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 |
| pyrus_communis | pycom03g08930 pycom11g10390 |
| rosa_chinensis | RchiOBHm_Chr5g0061351 RchiOBHm_Chr5g0061361 |
| rosa_laevigata | RLG00000035457 RLG00000035459 RLG00000035469 |
| rosa_multiflora | Rmu_co8244331.1_g000001 Rmu_sc0000338.1_g000014 Rmu_sc0000689.1_g000017 Rmu_sc0033319.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00019320 Rroxscaffold_1G00019330 Rroxscaffold_1G00019380 |
| rosa_rugosa | Rorug05G0339600 |
| rosa_samantha | Rh5AG401900 Rh5BG414000 Rh5CG438500 Rh5DG428600 |
| rosa_wichuraiana | Rw5G037830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2837 |
| AatII | GACGTC | 1 cut(s) | 1541 |
| Acc36I | ACCTGC | 4 cut(s) | 1296, 1552, 1804, 2097 |
| AccB1I | GGYRCC | 1 cut(s) | 1238 |
| AccBSI | CCGCTC | 1 cut(s) | 2811 |
| AccII | CGCG | 1 cut(s) | 1207 |
| AciI | CCGC | 8 cut(s) | 271, 413, 521, 565, 569, 1205, 1257, 2811 |
| AclWI | GGATC | 4 cut(s) | 127, 624, 759, 2083 |
| AcoI | YGGCCR | 1 cut(s) | 54 |
| AcsI | RAATTY | 8 cut(s) | 360, 719, 1718, 1775, 2198, 2227, 2907, 2938 |
| AcuI | CTGAAG | 4 cut(s) | 711, 963, 1197, 1386 |
| AcyI | GRCGYC | 1 cut(s) | 1538 |
| AdeI | CACNNNGTG | 1 cut(s) | 2627 |
| AfaI | GTAC | 8 cut(s) | 31, 787, 925, 2111, 2184, 2762, 2934, 3028 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 218, 422, 647, 1342, 2072, 2375, 2583, 2969 |
| AflII | CTTAAG | 1 cut(s) | 2795 |
| AflIII | ACRYGT | 1 cut(s) | 559 |
| AjnI | CCWGG | 5 cut(s) | 325, 1119, 1861, 2071, 2471 |
| AleI | CACNNNNGTG | 2 cut(s) | 219, 221 |
| Alw21I | GWGCWC | 3 cut(s) | 1022, 1599, 2347 |
| Alw26I | GTCTC | 3 cut(s) | 550, 768, 2961 |
| AlwI | GGATC | 4 cut(s) | 127, 624, 759, 2083 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1031, 2855 |
| AoxI | GGCC | 6 cut(s) | 54, 410, 799, 1376, 1873, 2827 |
| ApeKI | GCWGC | 8 cut(s) | 854, 1663, 2411, 2501, 2667, 2737, 2882, 2894 |
| ApoI | RAATTY | 8 cut(s) | 360, 719, 1718, 1775, 2198, 2227, 2907, 2938 |
| AseI | ATTAAT | 2 cut(s) | 471, 2712 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1273, 1483, 2451 |
| AspLEI | GCGC | 1 cut(s) | 1711 |
| AspS9I | GGNCC | 4 cut(s) | 410, 799, 2972, 3014 |
| AsuC2I | CCSGG | 1 cut(s) | 3051 |
| AsuHPI | GGTGA | 8 cut(s) | 66, 273, 1060, 1784, 2433, 2613, 2934, 2998 |
| AvaII | GGWCC | 2 cut(s) | 2972, 3014 |
| BalI | TGGCCA | 1 cut(s) | 56 |
| BanI | GGYRCC | 1 cut(s) | 1238 |
| BbsI | GAAGAC | 4 cut(s) | 63, 938, 1374, 1421 |
| Bbv12I | GWGCWC | 3 cut(s) | 1022, 1599, 2347 |
| BbvI | GCAGC | 8 cut(s) | 866, 1675, 2423, 2488, 2679, 2749, 2869, 2906 |
| BccI | CCATC | 5 cut(s) | 268, 286, 1778, 2819, 2854 |
| BceAI | ACGGC | 2 cut(s) | 159, 2377 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 800, 834 |
| BciT130I | CCWGG | 5 cut(s) | 327, 1121, 1863, 2073, 2473 |
| BciVI | GTATCC | 1 cut(s) | 2470 |
| BclI | TGATCA | 2 cut(s) | 2494, 2611 |
| BcnI | CCSGG | 1 cut(s) | 3051 |
| BcoDI | GTCTC | 3 cut(s) | 550, 768, 2961 |
| BfaI | CTAG | 9 cut(s) | 513, 828, 891, 1338, 1572, 1842, 2418, 2805, 2969 |
| BfmI | CTRYAG | 2 cut(s) | 2639, 2735 |
| BfrI | CTTAAG | 1 cut(s) | 2795 |
| BfuAI | ACCTGC | 4 cut(s) | 1296, 1552, 1804, 2097 |
| BfuI | GTATCC | 1 cut(s) | 2470 |
| BlpI | GCTNAGC | 2 cut(s) | 1016, 1809 |
| Bme1390I | CCNGG | 6 cut(s) | 327, 1121, 1863, 2073, 2473, 3051 |
| Bme18I | GGWCC | 2 cut(s) | 2972, 3014 |
| BmgT120I | GGNCC | 4 cut(s) | 410, 799, 2972, 3014 |
| BmiI | GGNNCC | 4 cut(s) | 331, 411, 1240, 2064 |
| BmrFI | CCNGG | 6 cut(s) | 327, 1121, 1863, 2073, 2473, 3051 |
| BmrI | ACTGGG | 1 cut(s) | 1935 |
| BmuI | ACTGGG | 1 cut(s) | 1935 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1425 |
| BpiI | GAAGAC | 4 cut(s) | 63, 938, 1374, 1421 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2504, 2536 |
| BpmI | CTGGAG | 2 cut(s) | 2064, 2919 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1016, 1809 |
| BpuEI | CTTGAG | 1 cut(s) | 560 |
| BpuMI | CCSGG | 1 cut(s) | 3051 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1470 |
| BsaHI | GRCGYC | 1 cut(s) | 1538 |
| BsaJI | CCNNGG | 5 cut(s) | 1862, 2427, 2472, 2577, 3049 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1012, 1042, 1098, 1128 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 218, 422, 647, 1342, 2072, 2375, 2583, 2969 |
| Bse118I | RCCGGY | 2 cut(s) | 97, 2983 |
| Bse1I | ACTGG | 8 cut(s) | 57, 156, 223, 1379, 1859, 1930, 1964, 2406 |
| Bse3DI | GCAATG | 1 cut(s) | 531 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1470 |
| BseBI | CCWGG | 5 cut(s) | 327, 1121, 1863, 2073, 2473 |
| BseDI | CCNNGG | 5 cut(s) | 1862, 2427, 2472, 2577, 3049 |
| BseGI | GGATG | 8 cut(s) | 279, 1129, 1471, 2153, 2164, 2597, 2692, 2785 |
| BseJI | GATNNNNATC | 1 cut(s) | 1470 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 218, 422, 647, 1342, 2072, 2375, 2583, 2969 |
| BseMI | GCAATG | 1 cut(s) | 531 |
| BseMII | CTCAG | 4 cut(s) | 281, 1007, 1670, 2127 |
| BseNI | ACTGG | 8 cut(s) | 57, 156, 223, 1379, 1859, 1930, 1964, 2406 |
| BseRI | GAGGAG | 4 cut(s) | 742, 2099, 2949, 2952 |
| BseXI | GCAGC | 8 cut(s) | 866, 1675, 2423, 2488, 2679, 2749, 2869, 2906 |
| BseYI | CCCAGC | 2 cut(s) | 449, 1185 |
| BsgI | GTGCAG | 1 cut(s) | 873 |
| Bsh1236I | CGCG | 1 cut(s) | 1207 |
| BshFI | GGCC | 6 cut(s) | 56, 412, 801, 1378, 1875, 2829 |
| BshNI | GGYRCC | 1 cut(s) | 1238 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1022, 1599, 2347 |
| BsiSI | CCGG | 3 cut(s) | 98, 2984, 3051 |
| BslFI | GGGAC | 2 cut(s) | 466, 1525 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 218, 422, 647, 1342, 2072, 2375, 2583, 2969 |
| BsmAI | GTCTC | 3 cut(s) | 550, 768, 2961 |
| BsmFI | GGGAC | 2 cut(s) | 466, 1525 |
| BsmI | GAATGC | 2 cut(s) | 451, 2634 |
| BsnI | GGCC | 6 cut(s) | 56, 412, 801, 1378, 1875, 2829 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1022, 1599, 2347 |
| Bsp1407I | TGTACA | 2 cut(s) | 2932, 3026 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1016, 1809 |
| Bsp19I | CCATGG | 1 cut(s) | 2427 |
| BspACI | CCGC | 8 cut(s) | 271, 413, 521, 565, 569, 1205, 1257, 2811 |
| BspANI | GGCC | 6 cut(s) | 56, 412, 801, 1378, 1875, 2829 |
| BspCNI | CTCAG | 4 cut(s) | 282, 1008, 1669, 2126 |
| BspFNI | CGCG | 1 cut(s) | 1207 |
| BspHI | TCATGA | 3 cut(s) | 400, 1498, 1722 |
| BspLI | GGNNCC | 4 cut(s) | 331, 411, 1240, 2064 |
| BspMAI | CTGCAG | 2 cut(s) | 2643, 2739 |
| BspMI | ACCTGC | 4 cut(s) | 1296, 1552, 1804, 2097 |
| BspPI | GGATC | 4 cut(s) | 127, 624, 759, 2083 |
| BspQI | GCTCTTC | 1 cut(s) | 687 |
| BspT107I | GGYRCC | 1 cut(s) | 1238 |
| BspTI | CTTAAG | 1 cut(s) | 2795 |
| BsrBI | CCGCTC | 1 cut(s) | 2811 |
| BsrDI | GCAATG | 1 cut(s) | 531 |
| BsrFI | RCCGGY | 2 cut(s) | 97, 2983 |
| BsrGI | TGTACA | 2 cut(s) | 2932, 3026 |
| BsrI | ACTGG | 8 cut(s) | 57, 156, 223, 1379, 1859, 1930, 1964, 2406 |
| BssAI | RCCGGY | 2 cut(s) | 97, 2983 |
| BssECI | CCNNGG | 5 cut(s) | 1862, 2427, 2472, 2577, 3049 |
| BssNI | GRCGYC | 1 cut(s) | 1538 |
| BssT1I | CCWWGG | 2 cut(s) | 2427, 2577 |
| Bst2UI | CCWGG | 5 cut(s) | 327, 1121, 1863, 2073, 2473 |
| Bst4CI | ACNGT | 5 cut(s) | 457, 806, 1410, 1934, 2459 |
| Bst6I | CTCTTC | 5 cut(s) | 213, 687, 1474, 1743, 1899 |
| BstACI | GRCGYC | 1 cut(s) | 1538 |
| BstAFI | CTTAAG | 1 cut(s) | 2795 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2243, 2687 |
| BstAUI | TGTACA | 2 cut(s) | 2932, 3026 |
| BstC8I | GCNNGC | 5 cut(s) | 567, 975, 1243, 1440, 2235 |
| BstDSI | CCRYGG | 1 cut(s) | 2427 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2967 |
| BstF5I | GGATG | 8 cut(s) | 279, 1129, 1471, 2153, 2164, 2597, 2692, 2785 |
| BstFNI | CGCG | 1 cut(s) | 1207 |
| BstHHI | GCGC | 1 cut(s) | 1711 |
| BstMAI | GTCTC | 3 cut(s) | 550, 768, 2961 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 161, 1577, 2243, 2687, 2891 |
| BstNI | CCWGG | 5 cut(s) | 327, 1121, 1863, 2073, 2473 |
| BstNSI | RCATGY | 3 cut(s) | 563, 956, 2571 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1425 |
| BstSCI | CCNGG | 6 cut(s) | 325, 1119, 1861, 2071, 2471, 3049 |
| BstSFI | CTRYAG | 2 cut(s) | 2639, 2735 |
| BstUI | CGCG | 1 cut(s) | 1207 |
| BstV1I | GCAGC | 8 cut(s) | 866, 1675, 2423, 2488, 2679, 2749, 2869, 2906 |
| BstV2I | GAAGAC | 4 cut(s) | 63, 938, 1374, 1421 |
| BstX2I | RGATCY | 1 cut(s) | 2075 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2088 |
| BstYI | RGATCY | 1 cut(s) | 2075 |
| BsuI | GTATCC | 1 cut(s) | 2470 |
| BsuRI | GGCC | 6 cut(s) | 56, 412, 801, 1378, 1875, 2829 |
| BtgI | CCRYGG | 1 cut(s) | 2427 |
| BtsCI | GGATG | 8 cut(s) | 279, 1129, 1471, 2153, 2164, 2597, 2692, 2785 |
| BtsIMutI | CAGTG | 8 cut(s) | 69, 216, 485, 1386, 1487, 1923, 1939, 2121 |
| BveI | ACCTGC | 4 cut(s) | 1296, 1552, 1804, 2097 |
| Cac8I | GCNNGC | 5 cut(s) | 567, 975, 1243, 1440, 2235 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1031, 2855 |
| CciI | TCATGA | 3 cut(s) | 400, 1498, 1722 |
| CfoI | GCGC | 1 cut(s) | 1711 |
| Cfr10I | RCCGGY | 2 cut(s) | 97, 2983 |
| Cfr13I | GGNCC | 4 cut(s) | 410, 799, 2972, 3014 |
| Csp6I | GTAC | 8 cut(s) | 30, 786, 924, 2110, 2183, 2761, 2933, 3027 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2905, 2940 |
| CviQI | GTAC | 8 cut(s) | 30, 786, 924, 2110, 2183, 2761, 2933, 3027 |
| DraI | TTTAAA | 2 cut(s) | 1521, 1615 |
| DraIII | CACNNNGTG | 1 cut(s) | 2627 |
| EaeI | YGGCCR | 1 cut(s) | 54 |
| Eam1104I | CTCTTC | 5 cut(s) | 213, 687, 1474, 1743, 1899 |
| EarI | CTCTTC | 5 cut(s) | 213, 687, 1474, 1743, 1899 |
| EciI | GGCGGA | 1 cut(s) | 584 |
| Eco130I | CCWWGG | 2 cut(s) | 2427, 2577 |
| Eco32I | GATATC | 1 cut(s) | 1942 |
| Eco47I | GGWCC | 2 cut(s) | 2972, 3014 |
| Eco57I | CTGAAG | 4 cut(s) | 711, 963, 1197, 1386 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2967 |
| EcoRI | GAATTC | 1 cut(s) | 2938 |
| EcoRII | CCWGG | 5 cut(s) | 325, 1119, 1861, 2071, 2471 |
| EcoRV | GATATC | 1 cut(s) | 1942 |
| EcoT14I | CCWWGG | 2 cut(s) | 2427, 2577 |
| EcoT22I | ATGCAT | 1 cut(s) | 166 |
| ErhI | CCWWGG | 2 cut(s) | 2427, 2577 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2814, 2846 |
| FaqI | GGGAC | 2 cut(s) | 466, 1525 |
| FauI | CCCGC | 2 cut(s) | 558, 1264 |
| FbaI | TGATCA | 2 cut(s) | 2494, 2611 |
| FokI | GGATG | 8 cut(s) | 286, 1136, 1478, 2151, 2160, 2584, 2699, 2792 |
| FspBI | CTAG | 9 cut(s) | 513, 828, 891, 1338, 1572, 1842, 2418, 2805, 2969 |
| GlaI | GCGC | 1 cut(s) | 1710 |
| GsaI | CCCAGC | 2 cut(s) | 453, 1189 |
| GsuI | CTGGAG | 2 cut(s) | 2064, 2919 |
| HaeIII | GGCC | 6 cut(s) | 56, 412, 801, 1378, 1875, 2829 |
| HapII | CCGG | 3 cut(s) | 98, 2984, 3051 |
| HhaI | GCGC | 1 cut(s) | 1711 |
| Hin1I | GRCGYC | 1 cut(s) | 1538 |
| Hin6I | GCGC | 1 cut(s) | 1709 |
| HinP1I | GCGC | 1 cut(s) | 1709 |
| HincII | GTYRAC | 1 cut(s) | 2389 |
| HindII | GTYRAC | 1 cut(s) | 2389 |
| HindIII | AAGCTT | 2 cut(s) | 312, 1440 |
| HpaII | CCGG | 3 cut(s) | 98, 2984, 3051 |
| HphI | GGTGA | 8 cut(s) | 66, 273, 1060, 1784, 2433, 2613, 2934, 2998 |
| Hpy166II | GTNNAC | 9 cut(s) | 226, 347, 1117, 1253, 1330, 1957, 2312, 2389, 2455 |
| Hpy8I | GTNNAC | 9 cut(s) | 226, 347, 1117, 1253, 1330, 1957, 2312, 2389, 2455 |
| Hpy99I | CGWCG | 1 cut(s) | 1540 |
| HpyCH4III | ACNGT | 5 cut(s) | 457, 806, 1410, 1934, 2459 |
| HpyCH4IV | ACGT | 2 cut(s) | 1538, 1761 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 161, 1577, 2243, 2687, 2891 |
| HpySE526I | ACGT | 2 cut(s) | 1538, 1761 |
| Hsp92I | GRCGYC | 1 cut(s) | 1538 |
| HspAI | GCGC | 1 cut(s) | 1709 |
| Ksp22I | TGATCA | 2 cut(s) | 2494, 2611 |
| LguI | GCTCTTC | 1 cut(s) | 687 |
| LmnI | GCTCC | 4 cut(s) | 335, 1033, 2342, 2808 |
| Lsp1109I | GCAGC | 8 cut(s) | 866, 1675, 2423, 2488, 2679, 2749, 2869, 2906 |
| MaeI | CTAG | 9 cut(s) | 513, 828, 891, 1338, 1572, 1842, 2418, 2805, 2969 |
| MaeII | ACGT | 2 cut(s) | 1538, 1761 |
| MaeIII | GTNAC | 2 cut(s) | 100, 439 |
| MbiI | CCGCTC | 1 cut(s) | 2811 |
| MfeI | CAATTG | 3 cut(s) | 1043, 1590, 2886 |
| MflI | RGATCY | 1 cut(s) | 2075 |
| MhlI | GDGCHC | 3 cut(s) | 1022, 1599, 2347 |
| MlsI | TGGCCA | 1 cut(s) | 56 |
| MluNI | TGGCCA | 1 cut(s) | 56 |
| MlyI | GAGTC | 4 cut(s) | 1223, 1325, 2513, 2522 |
| MmeI | TCCRAC | 1 cut(s) | 62 |
| Mox20I | TGGCCA | 1 cut(s) | 56 |
| Mph1103I | ATGCAT | 1 cut(s) | 166 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1273, 1483, 2451 |
| MscI | TGGCCA | 1 cut(s) | 56 |
| MslI | CAYNNNNRTG | 3 cut(s) | 219, 221, 352 |
| Msp20I | TGGCCA | 1 cut(s) | 56 |
| MspA1I | CMGCKG | 2 cut(s) | 857, 2897 |
| MspCI | CTTAAG | 1 cut(s) | 2795 |
| MspI | CCGG | 3 cut(s) | 98, 2984, 3051 |
| MspR9I | CCNGG | 6 cut(s) | 327, 1121, 1863, 2073, 2473, 3051 |
| MunI | CAATTG | 3 cut(s) | 1043, 1590, 2886 |
| Mva1269I | GAATGC | 2 cut(s) | 451, 2634 |
| MvaI | CCWGG | 5 cut(s) | 327, 1121, 1863, 2073, 2473 |
| MvnI | CGCG | 1 cut(s) | 1207 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 161, 1577, 2243, 2687, 2891 |
| NciI | CCSGG | 1 cut(s) | 3051 |
| NcoI | CCATGG | 1 cut(s) | 2427 |
| NlaIV | GGNNCC | 4 cut(s) | 331, 411, 1240, 2064 |
| NmuCI | GTSAC | 1 cut(s) | 439 |
| NsiI | ATGCAT | 1 cut(s) | 166 |
| NspI | RCATGY | 3 cut(s) | 563, 956, 2571 |
| OliI | CACNNNNGTG | 2 cut(s) | 219, 221 |
| PagI | TCATGA | 3 cut(s) | 400, 1498, 1722 |
| PciI | ACATGT | 1 cut(s) | 559 |
| PciSI | GCTCTTC | 1 cut(s) | 687 |
| PctI | GAATGC | 2 cut(s) | 451, 2634 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1273, 1483, 2451 |
| PfeI | GAWTC | 8 cut(s) | 539, 793, 946, 1181, 1532, 1845, 1858, 2549 |
| PleI | GAGTC | 4 cut(s) | 1222, 1325, 2513, 2521 |
| PpsI | GAGTC | 4 cut(s) | 1222, 1325, 2513, 2521 |
| PscI | ACATGT | 1 cut(s) | 559 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1425 |
| PshBI | ATTAAT | 2 cut(s) | 471, 2712 |
| PsiI | TTATAA | 1 cut(s) | 2837 |
| Psp6I | CCWGG | 5 cut(s) | 325, 1119, 1861, 2071, 2471 |
| PspFI | CCCAGC | 2 cut(s) | 449, 1185 |
| PspGI | CCWGG | 5 cut(s) | 325, 1119, 1861, 2071, 2471 |
| PspN4I | GGNNCC | 4 cut(s) | 331, 411, 1240, 2064 |
| PspPI | GGNCC | 4 cut(s) | 410, 799, 2972, 3014 |
| PstI | CTGCAG | 2 cut(s) | 2643, 2739 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1031, 2855 |
| PsuI | RGATCY | 1 cut(s) | 2075 |
| PvuII | CAGCTG | 2 cut(s) | 857, 2897 |
| RsaI | GTAC | 8 cut(s) | 31, 787, 925, 2111, 2184, 2762, 2934, 3028 |
| RsaNI | GTAC | 8 cut(s) | 30, 786, 924, 2110, 2183, 2761, 2933, 3027 |
| RseI | CAYNNNNRTG | 3 cut(s) | 219, 221, 352 |
| SapI | GCTCTTC | 1 cut(s) | 687 |
| Sau96I | GGNCC | 4 cut(s) | 410, 799, 2972, 3014 |
| SchI | GAGTC | 4 cut(s) | 1223, 1325, 2513, 2522 |
| ScrFI | CCNGG | 6 cut(s) | 327, 1121, 1863, 2073, 2473, 3051 |
| SduI | GDGCHC | 3 cut(s) | 1022, 1599, 2347 |
| SfcI | CTRYAG | 2 cut(s) | 2639, 2735 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2983 |
| SinI | GGWCC | 2 cut(s) | 2972, 3014 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 219, 221, 352 |
| SmlI | CTYRAG | 2 cut(s) | 575, 2795 |
| SmoI | CTYRAG | 2 cut(s) | 575, 2795 |
| SsiI | CCGC | 8 cut(s) | 271, 413, 521, 565, 569, 1205, 1257, 2811 |
| SspI | AATATT | 4 cut(s) | 469, 685, 1351, 2173 |
| SspMI | CTAG | 9 cut(s) | 513, 828, 891, 1338, 1572, 1842, 2418, 2805, 2969 |
| StyD4I | CCNGG | 6 cut(s) | 325, 1119, 1861, 2071, 2471, 3049 |
| StyI | CCWWGG | 2 cut(s) | 2427, 2577 |
| TaaI | ACNGT | 5 cut(s) | 457, 806, 1410, 1934, 2459 |
| TaiI | ACGT | 2 cut(s) | 1541, 1764 |
| TaqI | TCGA | 2 cut(s) | 810, 1535 |
| TatI | WGTACW | 6 cut(s) | 29, 785, 923, 2182, 2932, 3026 |
| TauI | GCSGC | 2 cut(s) | 415, 524 |
| TfiI | GAWTC | 8 cut(s) | 539, 793, 946, 1181, 1532, 1845, 1858, 2549 |
| TscAI | CASTG | 8 cut(s) | 69, 223, 485, 1386, 1494, 1930, 1939, 2121 |
| TseFI | GTSAC | 1 cut(s) | 439 |
| TseI | GCWGC | 8 cut(s) | 854, 1663, 2411, 2501, 2667, 2737, 2882, 2894 |
| Tsp45I | GTSAC | 1 cut(s) | 439 |
| TspGWI | ACGGA | 2 cut(s) | 487, 3007 |
| TspRI | CASTG | 8 cut(s) | 69, 223, 485, 1386, 1494, 1930, 1939, 2121 |
| Vha464I | CTTAAG | 1 cut(s) | 2795 |
| VpaK11BI | GGWCC | 2 cut(s) | 2972, 3014 |
| VspI | ATTAAT | 2 cut(s) | 471, 2712 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2967 |
| XapI | RAATTY | 8 cut(s) | 360, 719, 1718, 1775, 2198, 2227, 2907, 2938 |
| XbaI | TCTAGA | 1 cut(s) | 890 |
| XceI | RCATGY | 3 cut(s) | 563, 956, 2571 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 49 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1273, 1483, 2451 |
| XspI | CTAG | 9 cut(s) | 513, 828, 891, 1338, 1572, 1842, 2418, 2805, 2969 |
| ZraI | GACGTC | 1 cut(s) | 1539 |
| Zsp2I | ATGCAT | 1 cut(s) | 166 |