Rmu_sc0033319.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033319.1
Physical Location & Seq
Reverse (-)
2 .. 2742
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033319.1_g000001.1.cds

Sequence Viewer

Length: 1565 bp
atggattcggatctccctctgatcgaaatcgcaggagaagacgactcacttcttcagtccactcaacacggcgctatttccaccagcaccgccgccaacgacgacgcctatttcttctgctcgcctctccaaccccccagatccagacccagagagggtgtgaaagtgaatggggatacccaaaaaccttcatgtagggatagtatgaataaagagaactctaacttgaacaagattgaagaaaagaaattcagcctccacccgcagcaaatgaagaggaagaagaagggaggatacaatttgcgtaaaagccttgcttgggaccgagctttctttgaggaagaaggtgtattgaactccgaagaattatccatgattactggcagtgtaaactctagtgggtcgttgtcagtcatccatgaagagactagttgtggtactgattcagcgtatcttcaggggcttgaagagaacttattcaaggagattccgggaagtacaccaaagaaagatgggattactggtggcagaccattgccaaagcatgcttcaccagctagagataatgcagtcccaggttctgcgggtagacggaaggtgctatcagcgcgtgatagcaatagaagtggctcaaaacgtagtgtcaatttgaacaacaccaaaactggtctaaataatgcaaaagttggtcctatgggaaaatccttgactgctaaaagttgtactcgtccaaccagaagaaatgtggccagttcagtgaagtcttcaccaaccaaagcacaatgtccaccggttacagaagcaaaaaatggatcggaggttatcacaaaacaagcacttccttctaccagtcatacatcatatggctgtgatgacatatccagaaaaattgcagttcctgaggaggtgacctcaaaacaagcacttcgttctgccagtcatgcatcacactgccgtgatgacagacttagaaaagttgcagttcctcttcctcacactggtgtgaacttgccacatactcaactccaaacatcaaaaccatcaggtttgcggatgccatcaccctcgctgagtttctttaatcagcaaaaagcttcttctttacctggctcccataagagcagttcacaaccatgcaaaattcctaagtttaggcaaattggttctgtaaatccaagtcatgaattggggccgccttcacttgggaaaatgccaaatgtgaccaatgctggggcagtaatgggaaatattaatgttaagtgttcaagttcaagttccgttctatctgatactcgccctgcggcaatggacaaagtggatgcagtctcgcaaataagacatgtgcgggcggaactcaaggtatcatctaagtcaaaaggtaatggtatgacagaggatcacagaaagttaaatagcatacctgttcatggctaccaacaatctaccccacaagcagaaccaaatattactgaagagctttcttatatggaagatgtagaatttcagaggagtgatgataaatgtctaatggatcaggggttgtctcttgcatttcctccaaaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

521

Amino Acids

56.28

Weight (kDa)

9.41

Isoelectric Point (pI)

59.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 589
AccII CGCG 1 cut(s) 610
AciI CCGC 9 cut(s) 90, 93, 263, 584, 1051, 1193, 1301, 1345, 1349
AclWI GGATC 5 cut(s) 18, 135, 820, 1404, 1539
AcoI YGGCCR 1 cut(s) 747
AcsI RAATTY 3 cut(s) 248, 1140, 1499
AcuI CTGAAG 3 cut(s) 38, 440, 1491
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 3 cut(s) 439, 499, 724
AfiI CCNNNNNNNGG 6 cut(s) 155, 319, 998, 1202, 1230, 1427
AflIII ACRYGT 1 cut(s) 1339
AgeI ACCGGT 1 cut(s) 790
AgsI TTSAA 8 cut(s) 229, 239, 355, 467, 481, 652, 1266, 1272
AhlI ACTAGT 1 cut(s) 428
AjnI CCWGG 2 cut(s) 574, 1105
AjuI GAANNNNNNNTTGG 2 cut(s) 532, 564
AleI CACNNNNGTG 3 cut(s) 954, 999, 1001
AluBI AGCT 4 cut(s) 329, 557, 1094, 1477
AluI AGCT 4 cut(s) 329, 557, 1094, 1477
Alw26I GTCTC 3 cut(s) 419, 1330, 1548
AlwI GGATC 5 cut(s) 18, 135, 820, 1404, 1539
AlwNI CAGNNNCTG 2 cut(s) 581, 899
AoxI GGCC 2 cut(s) 747, 1190
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 3 cut(s) 248, 1140, 1499
AseI ATTAAT 1 cut(s) 1251
AsiGI ACCGGT 1 cut(s) 790
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 2 cut(s) 74, 610
AspS9I GGNCC 3 cut(s) 322, 689, 1190
AsuC2I CCSGG 1 cut(s) 492
AsuHPI GGTGA 4 cut(s) 543, 759, 919, 1053
AvaII GGWCC 2 cut(s) 322, 689
AxyI CCTNAGG 1 cut(s) 900
BalI TGGCCA 1 cut(s) 749
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BbsI GAAGAC 2 cut(s) 45, 756
BbvI GCAGC 1 cut(s) 277
BccI CCATC 3 cut(s) 506, 1048, 1066
BceAI ACGGC 2 cut(s) 85, 939
BciT130I CCWGG 2 cut(s) 576, 1107
BciVI GTATCC 2 cut(s) 169, 287
BcnI CCSGG 1 cut(s) 492
BcoDI GTCTC 3 cut(s) 419, 1330, 1548
BcuI ACTAGT 1 cut(s) 428
BfaI CTAG 3 cut(s) 396, 429, 558
BfoI RGCGCY 1 cut(s) 75
BfuI GTATCC 2 cut(s) 169, 287
BisI GCNGC 4 cut(s) 93, 266, 1193, 1302
BlsI GCNGC 4 cut(s) 94, 267, 1194, 1303
Bme1390I CCNGG 3 cut(s) 492, 576, 1107
Bme18I GGWCC 2 cut(s) 322, 689
BmgT120I GGNCC 3 cut(s) 322, 689, 1190
BmiI GGNNCC 3 cut(s) 323, 1111, 1191
BmrFI CCNGG 3 cut(s) 492, 576, 1107
BmsI GCATC 3 cut(s) 953, 1044, 1309
BpiI GAAGAC 2 cut(s) 45, 756
BplI GAGNNNNNCTC 2 cut(s) 896, 928
BpuEI CTTGAG 1 cut(s) 1340
BpuMI CCSGG 1 cut(s) 492
BsaBI GATNNNNATC 2 cut(s) 9, 26
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 574
BsaWI WCCGGW 1 cut(s) 790
Bsc4I CCNNNNNNNGG 6 cut(s) 155, 319, 998, 1202, 1230, 1427
Bse118I RCCGGY 1 cut(s) 790
Bse1I ACTGG 7 cut(s) 385, 526, 670, 750, 849, 936, 1003
Bse21I CCTNAGG 1 cut(s) 900
Bse3DI GCAATG 2 cut(s) 533, 1311
Bse8I GATNNNNATC 2 cut(s) 9, 26
BseBI CCWGG 2 cut(s) 576, 1107
BseDI CCNNGG 1 cut(s) 574
BseGI GGATG 3 cut(s) 414, 1059, 1324
BseJI GATNNNNATC 2 cut(s) 9, 26
BseLI CCNNNNNNNGG 6 cut(s) 155, 319, 998, 1202, 1230, 1427
BseMI GCAATG 2 cut(s) 533, 1311
BseMII CTCAG 2 cut(s) 891, 1061
BseNI ACTGG 7 cut(s) 385, 526, 670, 750, 849, 936, 1003
BseRI GAGGAG 2 cut(s) 917, 1522
BseXI GCAGC 1 cut(s) 277
BseYI CCCAGC 1 cut(s) 1229
Bsh1236I CGCG 1 cut(s) 610
BshFI GGCC 2 cut(s) 749, 1192
BshTI ACCGGT 1 cut(s) 790
BsiSI CCGG 2 cut(s) 491, 791
BslFI GGGAC 2 cut(s) 335, 557
BslI CCNNNNNNNGG 6 cut(s) 155, 319, 998, 1202, 1230, 1427
BsmAI GTCTC 3 cut(s) 419, 1330, 1548
BsmFI GGGAC 2 cut(s) 335, 557
BsnI GGCC 2 cut(s) 749, 1192
Bsp143I GATC 6 cut(s) 10, 21, 140, 812, 1396, 1531
BspACI CCGC 9 cut(s) 90, 93, 263, 584, 1051, 1193, 1301, 1345, 1349
BspANI GGCC 2 cut(s) 749, 1192
BspCNI CTCAG 2 cut(s) 892, 1062
BspFNI CGCG 1 cut(s) 610
BspHI TCATGA 1 cut(s) 1180
BspLI GGNNCC 3 cut(s) 323, 1111, 1191
BspPI GGATC 5 cut(s) 18, 135, 820, 1404, 1539
BspQI GCTCTTC 1 cut(s) 1467
BsrDI GCAATG 2 cut(s) 533, 1311
BsrFI RCCGGY 1 cut(s) 790
BsrI ACTGG 7 cut(s) 385, 526, 670, 750, 849, 936, 1003
BssAI RCCGGY 1 cut(s) 790
BssECI CCNNGG 1 cut(s) 574
BssMI GATC 6 cut(s) 10, 21, 140, 812, 1396, 1531
BssNI GRCGYC 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 576, 1107
Bst6I CTCTTC 5 cut(s) 269, 417, 462, 993, 1467
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 3 cut(s) 122, 546, 1347
BstDEI CTNAG 5 cut(s) 900, 968, 1070, 1146, 1368
BstEII GGTNACC 1 cut(s) 907
BstF5I GGATG 3 cut(s) 414, 1059, 1324
BstFNI CGCG 1 cut(s) 610
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 2 cut(s) 74, 610
BstKTI GATC 6 cut(s) 13, 24, 143, 815, 1399, 1534
BstMAI GTCTC 3 cut(s) 419, 1330, 1548
BstMBI GATC 6 cut(s) 10, 21, 140, 812, 1396, 1531
BstMWI GCNNNNNNNGC 3 cut(s) 554, 607, 941
BstNI CCWGG 2 cut(s) 576, 1107
BstNSI RCATGY 2 cut(s) 548, 1343
BstPI GGTNACC 1 cut(s) 907
BstSCI CCNGG 3 cut(s) 490, 574, 1105
BstUI CGCG 1 cut(s) 610
BstV1I GCAGC 1 cut(s) 277
BstV2I GAAGAC 2 cut(s) 45, 756
BstX2I RGATCY 2 cut(s) 10, 140
BstYI RGATCY 2 cut(s) 10, 140
Bsu36I CCTNAGG 1 cut(s) 900
BsuI GTATCC 2 cut(s) 169, 287
BsuRI GGCC 2 cut(s) 749, 1192
BtsCI GGATG 3 cut(s) 414, 1059, 1324
BtsI GCAGTG 2 cut(s) 391, 949
BtsIMutI CAGTG 4 cut(s) 391, 762, 949, 996
Cac8I GCNNGC 3 cut(s) 122, 546, 1347
CaiI CAGNNNCTG 2 cut(s) 581, 899
CciI TCATGA 1 cut(s) 1180
CfoI GCGC 2 cut(s) 74, 610
Cfr10I RCCGGY 1 cut(s) 790
Cfr13I GGNCC 3 cut(s) 322, 689, 1190
CseI GACGC 1 cut(s) 113
Csp6I GTAC 3 cut(s) 438, 498, 723
CspAI ACCGGT 1 cut(s) 790
CspCI CAANNNNNGTGG 2 cut(s) 607, 642
CviAII CATG 9 cut(s) 192, 373, 419, 545, 941, 1134, 1181, 1340, 1427
CviQI GTAC 3 cut(s) 438, 498, 723
DdeI CTNAG 5 cut(s) 900, 968, 1070, 1146, 1368
DpnI GATC 6 cut(s) 12, 23, 142, 814, 1398, 1533
DpnII GATC 6 cut(s) 10, 21, 140, 812, 1396, 1531
EaeI YGGCCR 1 cut(s) 747
Eam1104I CTCTTC 5 cut(s) 269, 417, 462, 993, 1467
EarI CTCTTC 5 cut(s) 269, 417, 462, 993, 1467
EciI GGCGGA 1 cut(s) 1364
Eco47I GGWCC 2 cut(s) 322, 689
Eco57I CTGAAG 3 cut(s) 38, 440, 1491
Eco81I CCTNAGG 1 cut(s) 900
Eco91I GGTNACC 1 cut(s) 907
EcoO65I GGTNACC 1 cut(s) 907
EcoRII CCWGG 2 cut(s) 574, 1105
EcoT22I ATGCAT 1 cut(s) 946
FaeI CATG 9 cut(s) 195, 376, 422, 548, 944, 1137, 1184, 1343, 1430
FalI AAGNNNNNCTT 2 cut(s) 301, 333
FaqI GGGAC 2 cut(s) 335, 557
FatI CATG 9 cut(s) 191, 372, 418, 544, 940, 1133, 1180, 1339, 1426
FauI CCCGC 3 cut(s) 270, 577, 1338
FauNDI CATATG 1 cut(s) 862
FblI GTMKAC 1 cut(s) 589
Fnu4HI GCNGC 4 cut(s) 93, 266, 1193, 1302
FokI GGATG 3 cut(s) 401, 1066, 1331
Fsp4HI GCNGC 4 cut(s) 93, 266, 1193, 1302
FspBI CTAG 3 cut(s) 396, 429, 558
GlaI GCGC 2 cut(s) 73, 609
GluI GCNGC 4 cut(s) 93, 266, 1193, 1302
GsaI CCCAGC 1 cut(s) 1233
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 2 cut(s) 749, 1192
HapII CCGG 2 cut(s) 491, 791
HgaI GACGC 1 cut(s) 113
HhaI GCGC 2 cut(s) 74, 610
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 9 cut(s) 195, 376, 422, 548, 944, 1137, 1184, 1343, 1430
Hin6I GCGC 2 cut(s) 72, 608
HinP1I GCGC 2 cut(s) 72, 608
HindIII AAGCTT 1 cut(s) 1092
HinfI GANTC 4 cut(s) 5, 44, 443, 487
HpaII CCGG 2 cut(s) 491, 791
HphI GGTGA 4 cut(s) 543, 759, 919, 1053
Hpy166II GTNNAC 7 cut(s) 60, 391, 500, 590, 788, 1006, 1127
Hpy188I TCNGA 6 cut(s) 10, 21, 361, 817, 1288, 1506
Hpy188III TCNNGA 4 cut(s) 144, 882, 899, 1181
Hpy8I GTNNAC 7 cut(s) 60, 391, 500, 590, 788, 1006, 1127
Hpy99I CGWCG 2 cut(s) 104, 107
HpyAV CCTTC 6 cut(s) 198, 280, 338, 589, 852, 1206
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 8 cut(s) 569, 680, 893, 944, 980, 1137, 1322, 1550
HpyF10VI GCNNNNNNNGC 3 cut(s) 554, 607, 941
HpyF3I CTNAG 5 cut(s) 900, 968, 1070, 1146, 1368
HpySE526I ACGT 1 cut(s) 637
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 9 cut(s) 195, 376, 422, 548, 944, 1137, 1184, 1343, 1430
HspAI GCGC 2 cut(s) 72, 608
Kzo9I GATC 6 cut(s) 10, 21, 140, 812, 1396, 1531
LguI GCTCTTC 1 cut(s) 1467
LmnI GCTCC 1 cut(s) 1115
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 3 cut(s) 953, 1044, 1309
MaeI CTAG 3 cut(s) 396, 429, 558
MaeII ACGT 1 cut(s) 637
MaeIII GTNAC 3 cut(s) 793, 907, 1219
MalI GATC 6 cut(s) 12, 23, 142, 814, 1398, 1533
MboI GATC 6 cut(s) 10, 21, 140, 812, 1396, 1531
MflI RGATCY 2 cut(s) 10, 140
MlsI TGGCCA 1 cut(s) 749
MluCI AATT 9 cut(s) 248, 298, 365, 646, 888, 1140, 1158, 1184, 1499
MluNI TGGCCA 1 cut(s) 749
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 2 cut(s) 154, 755
Mox20I TGGCCA 1 cut(s) 749
Mph1103I ATGCAT 1 cut(s) 946
MroXI GAANNNNTTC 1 cut(s) 476
MscI TGGCCA 1 cut(s) 749
MseI TTAA 4 cut(s) 1080, 1251, 1257, 1409
MslI CAYNNNNRTG 4 cut(s) 954, 999, 1001, 1132
Msp20I TGGCCA 1 cut(s) 749
MspI CCGG 2 cut(s) 491, 791
MspR9I CCNGG 3 cut(s) 492, 576, 1107
MvaI CCWGG 2 cut(s) 576, 1107
MvnI CGCG 1 cut(s) 610
MwoI GCNNNNNNNGC 3 cut(s) 554, 607, 941
NciI CCSGG 1 cut(s) 492
NdeI CATATG 1 cut(s) 862
NdeII GATC 6 cut(s) 10, 21, 140, 812, 1396, 1531
NlaIII CATG 9 cut(s) 195, 376, 422, 548, 944, 1137, 1184, 1343, 1430
NlaIV GGNNCC 3 cut(s) 323, 1111, 1191
NmuCI GTSAC 2 cut(s) 907, 1219
NsiI ATGCAT 1 cut(s) 946
NspI RCATGY 2 cut(s) 548, 1343
OliI CACNNNNGTG 3 cut(s) 954, 999, 1001
PaeI GCATGC 1 cut(s) 548
PagI TCATGA 1 cut(s) 1180
PciI ACATGT 1 cut(s) 1339
PciSI GCTCTTC 1 cut(s) 1467
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 3 cut(s) 5, 443, 487
PfoI TCCNGGA 1 cut(s) 490
PinAI ACCGGT 1 cut(s) 790
PkrI GCNGC 4 cut(s) 94, 267, 1194, 1303
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PscI ACATGT 1 cut(s) 1339
PshBI ATTAAT 1 cut(s) 1251
Psp6I CCWGG 2 cut(s) 574, 1105
PspEI GGTNACC 1 cut(s) 907
PspFI CCCAGC 1 cut(s) 1229
PspGI CCWGG 2 cut(s) 574, 1105
PspN4I GGNNCC 3 cut(s) 323, 1111, 1191
PspPI GGNCC 3 cut(s) 322, 689, 1190
PstNI CAGNNNCTG 2 cut(s) 581, 899
PsuI RGATCY 2 cut(s) 10, 140
RsaI GTAC 3 cut(s) 439, 499, 724
RsaNI GTAC 3 cut(s) 438, 498, 723
RseI CAYNNNNRTG 4 cut(s) 954, 999, 1001, 1132
SapI GCTCTTC 1 cut(s) 1467
SaqAI TTAA 4 cut(s) 1080, 1251, 1257, 1409
SatI GCNGC 4 cut(s) 93, 266, 1193, 1302
Sau3AI GATC 6 cut(s) 10, 21, 140, 812, 1396, 1531
Sau96I GGNCC 3 cut(s) 322, 689, 1190
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 3 cut(s) 492, 576, 1107
SfaNI GCATC 3 cut(s) 953, 1044, 1309
SinI GGWCC 2 cut(s) 322, 689
SmiMI CAYNNNNRTG 4 cut(s) 954, 999, 1001, 1132
SmlI CTYRAG 1 cut(s) 1355
SmoI CTYRAG 1 cut(s) 1355
SpeI ACTAGT 1 cut(s) 428
SphI GCATGC 1 cut(s) 548
Sse9I AATT 9 cut(s) 248, 298, 365, 646, 888, 1140, 1158, 1184, 1499
SsiI CCGC 9 cut(s) 90, 93, 263, 584, 1051, 1193, 1301, 1345, 1349
SspI AATATT 2 cut(s) 1249, 1465
SspMI CTAG 3 cut(s) 396, 429, 558
StyD4I CCNGG 3 cut(s) 490, 574, 1105
TaiI ACGT 1 cut(s) 640
TaqI TCGA 1 cut(s) 24
TaqII GACCGA 1 cut(s) 339
TasI AATT 9 cut(s) 248, 298, 365, 646, 888, 1140, 1158, 1184, 1499
TatI WGTACW 2 cut(s) 497, 722
TauI GCSGC 3 cut(s) 95, 1195, 1304
TfiI GAWTC 3 cut(s) 5, 443, 487
Tru1I TTAA 4 cut(s) 1080, 1251, 1257, 1409
Tru9I TTAA 4 cut(s) 1080, 1251, 1257, 1409
TscAI CASTG 4 cut(s) 391, 762, 956, 1003
TseFI GTSAC 2 cut(s) 907, 1219
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 2 cut(s) 907, 1219
TspDTI ATGAA 6 cut(s) 180, 221, 287, 435, 1197, 1415
TspGWI ACGGA 2 cut(s) 607, 1267
TspRI CASTG 4 cut(s) 391, 762, 956, 1003
VpaK11BI GGWCC 2 cut(s) 322, 689
VspI ATTAAT 1 cut(s) 1251
XapI RAATTY 3 cut(s) 248, 1140, 1499
XceI RCATGY 2 cut(s) 548, 1343
XcmI CCANNNNNNNNNTGG 1 cut(s) 742
XmiI GTMKAC 1 cut(s) 589
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 3 cut(s) 396, 429, 558
Zsp2I ATGCAT 1 cut(s) 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.