Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8244331.1

Orthogroup ID

OG0004509

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 511

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8244331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgaataaagagaactctaacttgaacaagattgaagaaaagaaattcagcctccacccgcagcaaatgaagaggaagaagaagggaggatacaatttgcgtaaaagccttgcttgggaccgagctttctttgaggaagaaggtgtattgaactccgaagaattatccatgattactggcagtgtaaactctagtgggtcgttgtcagtcatccatgaagagactagttgtggtactgattcagcgtatcttcaggggcttgaagagaacttattcaaggagattccgggaagtacaccaaagaaagatgggattactggtggcagaccattgccaaagcatgcttcaccagctagagataatgcagtcccaggttctgcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.91

Weight (kDa)

7.85

Isoelectric Point (pI)

56.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60150 AT5G60150
fragaria_vesca	FvH4_3g33790 FvH4_3g33790
malus_domestica	MD03G1109500.v1.1 MD03G1109700.v1.1 MD11G1122700.v1.1
prunus_persica	Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1
pyrus_communis	pycom03g08930 pycom11g10390
rosa_chinensis	RchiOBHm_Chr5g0061351 RchiOBHm_Chr5g0061361
rosa_laevigata	RLG00000035457 RLG00000035459 RLG00000035469
rosa_multiflora	Rmu_co8244331.1_g000001 Rmu_sc0000338.1_g000014 Rmu_sc0000689.1_g000017 Rmu_sc0033319.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019320 Rroxscaffold_1G00019330 Rroxscaffold_1G00019380
rosa_rugosa	Rorug05G0339600
rosa_samantha	Rh5AG401900 Rh5BG414000 Rh5CG438500 Rh5DG428600
rosa_wichuraiana	Rw5G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	2 cut(s)	235, 295
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	5 cut(s)	25, 35, 151, 263, 277
AhlI	ACTAGT	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
AluBI	AGCT	2 cut(s)	125, 353
AluI	AGCT	2 cut(s)	125, 353
Alw26I	GTCTC	1 cut(s)	215
AlwNI	CAGNNNCTG	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	118
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	2 cut(s)	74, 106
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	372
BciVI	GTATCC	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	215
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	3 cut(s)	192, 225, 354
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme1390I	CCNGG	2 cut(s)	288, 372
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	2 cut(s)	288, 372
BpuMI	CCSGG	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	181, 322
Bse3DI	GCAATG	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	329
BseNI	ACTGG	2 cut(s)	181, 322
BseXI	GCAGC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	2 cut(s)	131, 353
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	2 cut(s)	131, 353
BspACI	CCGC	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	181, 322
BssECI	CCNNGG	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	372
Bst6I	CTCTTC	3 cut(s)	65, 213, 258
BstC8I	GCNNGC	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	286, 370
BstV1I	GCAGC	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	234, 294
CviAII	CATG	3 cut(s)	169, 215, 341
CviJI	RGCY	5 cut(s)	51, 108, 125, 259, 353
CviKI_1	RGCY	5 cut(s)	51, 108, 125, 259, 353
CviQI	GTAC	2 cut(s)	234, 294
Eam1104I	CTCTTC	3 cut(s)	65, 213, 258
EarI	CTCTTC	3 cut(s)	65, 213, 258
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	370
FaeI	CATG	3 cut(s)	172, 218, 344
FaiI	YATR	3 cut(s)	170, 216, 342
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FaqI	GGGAC	2 cut(s)	131, 353
FatI	CATG	3 cut(s)	168, 214, 340
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	3 cut(s)	192, 225, 354
GluI	GCNGC	1 cut(s)	62
HapII	CCGG	1 cut(s)	287
Hin1II	CATG	3 cut(s)	172, 218, 344
HinfI	GANTC	2 cut(s)	239, 283
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	339
Hpy166II	GTNNAC	2 cut(s)	187, 296
Hpy188I	TCNGA	1 cut(s)	157
Hpy8I	GTNNAC	2 cut(s)	187, 296
HpyAV	CCTTC	2 cut(s)	76, 134
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
Hsp92II	CATG	3 cut(s)	172, 218, 344
LpnPI	CCDG	6 cut(s)	162, 239, 300, 303, 357, 363
Lsp1109I	GCAGC	1 cut(s)	73
MaeI	CTAG	3 cut(s)	192, 225, 354
MboII	GAAGA	9 cut(s)	47, 82, 88, 91, 149, 170, 230, 242, 275
MluCI	AATT	3 cut(s)	44, 94, 161
MnlI	CCTC	4 cut(s)	62, 66, 80, 127
MroXI	GAANNNNTTC	1 cut(s)	272
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	288, 372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	350
NciI	CCSGG	1 cut(s)	288
NlaIII	CATG	3 cut(s)	172, 218, 344
NlaIV	GGNNCC	1 cut(s)	119
NspI	RCATGY	1 cut(s)	344
PaeI	GCATGC	1 cut(s)	344
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	239, 283
PfoI	TCCNGGA	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	377
RsaI	GTAC	2 cut(s)	235, 295
RsaNI	GTAC	2 cut(s)	234, 294
SatI	GCNGC	1 cut(s)	62
Sau96I	GGNCC	1 cut(s)	118
ScrFI	CCNGG	2 cut(s)	288, 372
SetI	ASST	4 cut(s)	127, 145, 355, 376
SinI	GGWCC	1 cut(s)	118
SpeI	ACTAGT	1 cut(s)	224
SphI	GCATGC	1 cut(s)	344
Sse9I	AATT	3 cut(s)	44, 94, 161
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	3 cut(s)	192, 225, 354
StyD4I	CCNGG	2 cut(s)	286, 370
TaqII	GACCGA	1 cut(s)	135
TasI	AATT	3 cut(s)	44, 94, 161
TatI	WGTACW	1 cut(s)	293
TfiI	GAWTC	2 cut(s)	239, 283
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	17, 83, 231
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	3 cut(s)	192, 225, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.