RchiOBHm_Chr5g0061351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004509
Physical Location & Seq
Forward (+)
66756369 .. 66757503
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33773

Sequence Viewer

Length: 687 bp
ATGGATTCCGATCTCCCTCTGATCGAAATCGCCGGAGAAGACGACTCGCTTCTTCAGTCGACTCCACACGGCGCCGTTTCGACCAGCACCGCCACCAACGACGACGCCTATTTCTTTTGCTCGCCTCTCCAACCCCCCAGATCCAGACCCAAAGAGGGTGTGAAAGTGAATGGGGATACCCAAAAATCTTCATGTAGGGATAGTATGAATAAAGAGAACACTAACTTGAACAAGATTGAAGAAAAGAAATTCAGCCTCCACCCGCAGCAAATGAAGAGGAAAAAGAAGGGAGGATACAATTTGCGTAAAAGCCTTGCTTGGGATCGAGCTTTCTTTGAGGAAGAAGGTGTATTGAACTCCGAAGAATTATCCATGATTACTGGCAGTGTAAACTCTAGTGGGTCGCTGTCAGTCATCCATGAAGAGACTAGTTGTGGTACTGATTCAGCGTATCTTCAGGGGCTTGAAGATAACTTATTCAAGGAGATTCCGGGAAGTACACCAAAGAAAGATGGGATTACTGGTGGCAGACCATTGCCAAAGCATGCTTCACCAGCTAGAGATAATGCAGTCCCAGGTTCTGCGGGCAGACGGAAGGTGCTATCAGCTCGTGATAGCAATAGAAGTGGCTCAAAACGCAGTGGTTGCCCTCGCCCTATGGCTTCCTCTTCATATCCTTTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.77

Weight (kDa)

8.29

Isoelectric Point (pI)

64.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 59
AciI CCGC 3 cut(s) 90, 263, 584
AclWI GGATC 2 cut(s) 135, 330
AcsI RAATTY 1 cut(s) 248
AcuI CTGAAG 2 cut(s) 38, 440
AcyI GRCGYC 2 cut(s) 72, 105
AfaI GTAC 2 cut(s) 439, 499
AfiI CCNNNNNNNGG 2 cut(s) 155, 319
AgsI TTSAA 5 cut(s) 229, 239, 355, 467, 481
AhlI ACTAGT 1 cut(s) 428
AjnI CCWGG 1 cut(s) 574
AjuI GAANNNNNNNTTGG 2 cut(s) 532, 564
AluBI AGCT 3 cut(s) 329, 557, 608
AluI AGCT 3 cut(s) 329, 557, 608
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 2 cut(s) 135, 330
AlwNI CAGNNNCTG 1 cut(s) 581
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 1 cut(s) 248
AspLEI GCGC 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 492
AsuHPI GGTGA 1 cut(s) 543
BanI GGYRCC 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BauI CACGAG 1 cut(s) 609
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 506
BceAI ACGGC 2 cut(s) 59, 85
BciT130I CCWGG 1 cut(s) 576
BciVI GTATCC 2 cut(s) 169, 287
BcnI CCSGG 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 419
BcuI ACTAGT 1 cut(s) 428
BfaI CTAG 3 cut(s) 396, 429, 558
BfoI RGCGCY 1 cut(s) 75
BfuI GTATCC 2 cut(s) 169, 287
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
Bme1390I CCNGG 2 cut(s) 492, 576
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 2 cut(s) 492, 576
BpiI GAAGAC 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 492
BsaBI GATNNNNATC 2 cut(s) 9, 26
BsaHI GRCGYC 2 cut(s) 72, 105
BsaJI CCNNGG 1 cut(s) 574
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 319
Bse1I ACTGG 2 cut(s) 385, 526
Bse3DI GCAATG 1 cut(s) 533
Bse8I GATNNNNATC 2 cut(s) 9, 26
BseBI CCWGG 1 cut(s) 576
BseDI CCNNGG 1 cut(s) 574
BseGI GGATG 1 cut(s) 414
BseJI GATNNNNATC 2 cut(s) 9, 26
BseLI CCNNNNNNNGG 2 cut(s) 155, 319
BseMI GCAATG 1 cut(s) 533
BseNI ACTGG 2 cut(s) 385, 526
BseXI GCAGC 1 cut(s) 277
BshNI GGYRCC 1 cut(s) 71
BsiSI CCGG 2 cut(s) 33, 491
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 2 cut(s) 155, 319
BsmAI GTCTC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 557
Bsp143I GATC 4 cut(s) 10, 21, 140, 322
BspACI CCGC 3 cut(s) 90, 263, 584
BspLI GGNNCC 1 cut(s) 73
BspPI GGATC 2 cut(s) 135, 330
BspT107I GGYRCC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 533
BsrI ACTGG 2 cut(s) 385, 526
BssECI CCNNGG 1 cut(s) 574
BssMI GATC 4 cut(s) 10, 21, 140, 322
BssNI GRCGYC 2 cut(s) 72, 105
BssSI CACGAG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 576
Bst6I CTCTTC 3 cut(s) 269, 417, 673
BstACI GRCGYC 2 cut(s) 72, 105
BstAPI GCANNNNNTGC 1 cut(s) 645
BstC8I GCNNGC 3 cut(s) 122, 546, 586
BstF5I GGATG 1 cut(s) 414
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 4 cut(s) 13, 24, 143, 325
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 4 cut(s) 10, 21, 140, 322
BstMWI GCNNNNNNNGC 3 cut(s) 554, 636, 645
BstNI CCWGG 1 cut(s) 576
BstNSI RCATGY 1 cut(s) 548
BstSCI CCNGG 2 cut(s) 490, 574
BstV1I GCAGC 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuI GTATCC 2 cut(s) 169, 287
BtsCI GGATG 1 cut(s) 414
BtsI GCAGTG 2 cut(s) 391, 646
BtsIMutI CAGTG 2 cut(s) 391, 646
Cac8I GCNNGC 3 cut(s) 122, 546, 586
CaiI CAGNNNCTG 1 cut(s) 581
CfoI GCGC 1 cut(s) 74
CseI GACGC 1 cut(s) 113
Csp6I GTAC 2 cut(s) 438, 498
CspCI CAANNNNNGTGG 2 cut(s) 607, 642
CviAII CATG 4 cut(s) 192, 373, 419, 545
CviJI RGCY 8 cut(s) 255, 312, 329, 463, 557, 608, 630, 662
CviKI_1 RGCY 8 cut(s) 255, 312, 329, 463, 557, 608, 630, 662
CviQI GTAC 2 cut(s) 438, 498
DinI GGCGCC 1 cut(s) 73
DpnI GATC 4 cut(s) 12, 23, 142, 324
DpnII GATC 4 cut(s) 10, 21, 140, 322
Eam1104I CTCTTC 3 cut(s) 269, 417, 673
EarI CTCTTC 3 cut(s) 269, 417, 673
Eco57I CTGAAG 2 cut(s) 38, 440
EcoRII CCWGG 1 cut(s) 574
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
FaeI CATG 4 cut(s) 195, 376, 422, 548
FaiI YATR 7 cut(s) 193, 206, 374, 420, 546, 659, 673
FalI AAGNNNNNCTT 2 cut(s) 301, 333
FaqI GGGAC 1 cut(s) 557
FatI CATG 4 cut(s) 191, 372, 418, 544
FauI CCCGC 2 cut(s) 270, 577
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 266
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 3 cut(s) 396, 429, 558
GlaI GCGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 266
HaeII RGCGCY 1 cut(s) 75
HapII CCGG 2 cut(s) 33, 491
HgaI GACGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 2 cut(s) 72, 105
Hin1II CATG 4 cut(s) 195, 376, 422, 548
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 5 cut(s) 5, 44, 61, 443, 487
HpaII CCGG 2 cut(s) 33, 491
HphI GGTGA 1 cut(s) 543
Hpy166II GTNNAC 3 cut(s) 60, 391, 500
Hpy188I TCNGA 3 cut(s) 10, 21, 361
Hpy188III TCNNGA 2 cut(s) 144, 611
Hpy8I GTNNAC 3 cut(s) 60, 391, 500
Hpy99I CGWCG 2 cut(s) 104, 107
HpyAV CCTTC 3 cut(s) 280, 338, 589
HpyCH4V TGCA 1 cut(s) 569
HpyF10VI GCNNNNNNNGC 3 cut(s) 554, 636, 645
Hsp92I GRCGYC 2 cut(s) 72, 105
Hsp92II CATG 4 cut(s) 195, 376, 422, 548
HspAI GCGC 1 cut(s) 72
KasI GGCGCC 1 cut(s) 71
Kzo9I GATC 4 cut(s) 10, 21, 140, 322
Lsp1109I GCAGC 1 cut(s) 277
MaeI CTAG 3 cut(s) 396, 429, 558
MalI GATC 4 cut(s) 12, 23, 142, 324
MboI GATC 4 cut(s) 10, 21, 140, 322
MflI RGATCY 1 cut(s) 140
MluCI AATT 3 cut(s) 248, 298, 365
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 2 cut(s) 38, 55
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 9 cut(s) 27, 135, 148, 266, 270, 284, 331, 660, 676
MspI CCGG 2 cut(s) 33, 491
MspR9I CCNGG 2 cut(s) 492, 576
MvaI CCWGG 1 cut(s) 576
MwoI GCNNNNNNNGC 3 cut(s) 554, 636, 645
NarI GGCGCC 1 cut(s) 72
NciI CCSGG 1 cut(s) 492
NdeII GATC 4 cut(s) 10, 21, 140, 322
NlaIII CATG 4 cut(s) 195, 376, 422, 548
NlaIV GGNNCC 1 cut(s) 73
NspI RCATGY 1 cut(s) 548
PaeI GCATGC 1 cut(s) 548
PfeI GAWTC 3 cut(s) 5, 443, 487
PfoI TCCNGGA 1 cut(s) 490
PkrI GCNGC 1 cut(s) 267
PleI GAGTC 2 cut(s) 38, 55
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 2 cut(s) 38, 55
Psp6I CCWGG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 574
PspN4I GGNNCC 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 2 cut(s) 439, 499
RsaNI GTAC 2 cut(s) 438, 498
SalI GTCGAC 1 cut(s) 58
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 4 cut(s) 10, 21, 140, 322
SchI GAGTC 2 cut(s) 38, 55
ScrFI CCNGG 2 cut(s) 492, 576
SetI ASST 6 cut(s) 331, 349, 559, 580, 600, 610
SfoI GGCGCC 1 cut(s) 73
SpeI ACTAGT 1 cut(s) 428
SphI GCATGC 1 cut(s) 548
Sse9I AATT 3 cut(s) 248, 298, 365
SsiI CCGC 3 cut(s) 90, 263, 584
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 3 cut(s) 396, 429, 558
StyD4I CCNGG 2 cut(s) 490, 574
TaqI TCGA 4 cut(s) 24, 59, 80, 325
TasI AATT 3 cut(s) 248, 298, 365
TatI WGTACW 1 cut(s) 497
TfiI GAWTC 3 cut(s) 5, 443, 487
TscAI CASTG 2 cut(s) 391, 646
TseI GCWGC 1 cut(s) 265
TspDTI ATGAA 5 cut(s) 180, 221, 287, 435, 660
TspGWI ACGGA 1 cut(s) 607
TspRI CASTG 2 cut(s) 391, 646
XapI RAATTY 1 cut(s) 248
XceI RCATGY 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 59
XspI CTAG 3 cut(s) 396, 429, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.