Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000689.1

Orthogroup ID

OG0004509

Physical Location & Seq

Genomic Coordinates Reverse (-)

53726 .. 55786

Gene Structure 2061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000689.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atggattccgatctccctctgatcgaaatcgccggagaagacgactcgcttcttcagtcgactccacacggcgccgtttcgaccagcaccgccaccaacgacggcgcctatttcttctgctcgcctctccaatcccccagatccagacccaaagagggtgtgaaagtgaatggggatacccaaaaaccttcatgtagggatagtatgaataaagagaactctaacttgaacaagattgaagaaaagaaattcagcctccacccgcagcaaatgaagaggaagaagaagggaggatacaatttgcgtaaaagccttgcttgggaccgagctttctttgaggaagaaggtgtattgaactccgaagaattatccatgattactggcagtgtaaactctagtgggtcgttgtcagtcatccatgaagagactagttgtggtactgattcagcgtatcttcaggggcttgaagagaacttattcaaggagattccgggaagtacaccaaagaaagatgggattactggtggcagaccattgccaaagcatgcttcaccagctagagataatgcagtcccaggttctgcggccagttcagtgaagtcttcaccaaccaaagcacaatgtccaccggttacagaagcaaaaaatggatcggaggttatcacaaaacaagcacttccttctaccagtcatacatcatatggctgtgatgacatatccagaaaaattgcagttcctgaggaggtgacctcaaaacaagcacttccttctgccagtcatgcatcatactgccgtgatgacagacttagaaaagttgcagttcctcttcctcacacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

30.02

Weight (kDa)

7.04

Isoelectric Point (pI)

59.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60150 AT5G60150
fragaria_vesca	FvH4_3g33790 FvH4_3g33790
malus_domestica	MD03G1109500.v1.1 MD03G1109700.v1.1 MD11G1122700.v1.1
prunus_persica	Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1
pyrus_communis	pycom03g08930 pycom11g10390
rosa_chinensis	RchiOBHm_Chr5g0061351 RchiOBHm_Chr5g0061361
rosa_laevigata	RLG00000035457 RLG00000035459 RLG00000035469
rosa_multiflora	Rmu_co8244331.1_g000001 Rmu_sc0000338.1_g000014 Rmu_sc0000689.1_g000017 Rmu_sc0033319.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019320 Rroxscaffold_1G00019330 Rroxscaffold_1G00019380
rosa_rugosa	Rorug05G0339600
rosa_samantha	Rh5AG401900 Rh5BG414000 Rh5CG438500 Rh5DG428600
rosa_wichuraiana	Rw5G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	71, 104
AccI	GTMKAC	1 cut(s)	59
AciI	CCGC	3 cut(s)	90, 263, 584
AclWI	GGATC	2 cut(s)	135, 658
AcoI	YGGCCR	1 cut(s)	585
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	2 cut(s)	38, 440
AcyI	GRCGYC	2 cut(s)	72, 105
AfaI	GTAC	2 cut(s)	439, 499
AfiI	CCNNNNNNNGG	2 cut(s)	155, 319
AgeI	ACCGGT	1 cut(s)	628
AgsI	TTSAA	5 cut(s)	229, 239, 355, 467, 481
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	574
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
AluBI	AGCT	2 cut(s)	329, 557
AluI	AGCT	2 cut(s)	329, 557
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	2 cut(s)	135, 658
AlwNI	CAGNNNCTG	2 cut(s)	581, 737
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	248
AsiGI	ACCGGT	1 cut(s)	628
Asp700I	GAANNNNTTC	1 cut(s)	476
AspLEI	GCGC	2 cut(s)	74, 107
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	3 cut(s)	543, 597, 757
AvaII	GGWCC	1 cut(s)	322
AxyI	CCTNAGG	1 cut(s)	738
BanI	GGYRCC	2 cut(s)	71, 104
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbsI	GAAGAC	2 cut(s)	45, 594
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	506
BceAI	ACGGC	4 cut(s)	59, 85, 118, 777
BciT130I	CCWGG	1 cut(s)	576
BciVI	GTATCC	2 cut(s)	169, 287
BcnI	CCSGG	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	419
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	3 cut(s)	396, 429, 558
BfoI	RGCGCY	2 cut(s)	75, 108
BfuI	GTATCC	2 cut(s)	169, 287
BisI	GCNGC	2 cut(s)	266, 585
BlsI	GCNGC	2 cut(s)	267, 586
Bme1390I	CCNGG	2 cut(s)	492, 576
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	3 cut(s)	73, 106, 323
BmrFI	CCNGG	2 cut(s)	492, 576
BmsI	GCATC	1 cut(s)	791
BpiI	GAAGAC	2 cut(s)	45, 594
BplI	GAGNNNNNCTC	2 cut(s)	734, 766
BpuMI	CCSGG	1 cut(s)	492
BsaBI	GATNNNNATC	2 cut(s)	9, 26
BsaHI	GRCGYC	2 cut(s)	72, 105
BsaJI	CCNNGG	1 cut(s)	574
BsaWI	WCCGGW	1 cut(s)	628
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 319
Bse118I	RCCGGY	1 cut(s)	628
Bse1I	ACTGG	5 cut(s)	385, 526, 588, 687, 774
Bse21I	CCTNAGG	1 cut(s)	738
Bse3DI	GCAATG	1 cut(s)	533
Bse8I	GATNNNNATC	2 cut(s)	9, 26
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	574
BseGI	GGATG	1 cut(s)	414
BseJI	GATNNNNATC	2 cut(s)	9, 26
BseLI	CCNNNNNNNGG	2 cut(s)	155, 319
BseMI	GCAATG	1 cut(s)	533
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	5 cut(s)	385, 526, 588, 687, 774
BseRI	GAGGAG	1 cut(s)	755
BseXI	GCAGC	1 cut(s)	277
BshFI	GGCC	1 cut(s)	587
BshNI	GGYRCC	2 cut(s)	71, 104
BshTI	ACCGGT	1 cut(s)	628
BsiSI	CCGG	3 cut(s)	33, 491, 629
BslFI	GGGAC	2 cut(s)	335, 557
BslI	CCNNNNNNNGG	2 cut(s)	155, 319
BsmAI	GTCTC	1 cut(s)	419
BsmFI	GGGAC	2 cut(s)	335, 557
BsnI	GGCC	1 cut(s)	587
Bsp143I	GATC	4 cut(s)	10, 21, 140, 650
BspACI	CCGC	3 cut(s)	90, 263, 584
BspANI	GGCC	1 cut(s)	587
BspCNI	CTCAG	1 cut(s)	730
BspLI	GGNNCC	3 cut(s)	73, 106, 323
BspPI	GGATC	2 cut(s)	135, 658
BspT107I	GGYRCC	2 cut(s)	71, 104
BsrDI	GCAATG	1 cut(s)	533
BsrFI	RCCGGY	1 cut(s)	628
BsrI	ACTGG	5 cut(s)	385, 526, 588, 687, 774
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	1 cut(s)	574
BssMI	GATC	4 cut(s)	10, 21, 140, 650
BssNI	GRCGYC	2 cut(s)	72, 105
Bst2UI	CCWGG	1 cut(s)	576
Bst6I	CTCTTC	4 cut(s)	269, 417, 462, 831
BstACI	GRCGYC	2 cut(s)	72, 105
BstC8I	GCNNGC	2 cut(s)	122, 546
BstDEI	CTNAG	2 cut(s)	738, 806
BstEII	GGTNACC	1 cut(s)	745
BstF5I	GGATG	1 cut(s)	414
BstH2I	RGCGCY	2 cut(s)	75, 108
BstHHI	GCGC	2 cut(s)	74, 107
BstKTI	GATC	4 cut(s)	13, 24, 143, 653
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	4 cut(s)	10, 21, 140, 650
BstMWI	GCNNNNNNNGC	2 cut(s)	554, 779
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	1 cut(s)	548
BstPI	GGTNACC	1 cut(s)	745
BstSCI	CCNGG	2 cut(s)	490, 574
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	2 cut(s)	45, 594
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
Bsu36I	CCTNAGG	1 cut(s)	738
BsuI	GTATCC	2 cut(s)	169, 287
BsuRI	GGCC	1 cut(s)	587
BtsCI	GGATG	1 cut(s)	414
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	391, 600
Cac8I	GCNNGC	2 cut(s)	122, 546
CaiI	CAGNNNCTG	2 cut(s)	581, 737
CfoI	GCGC	2 cut(s)	74, 107
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	438, 498
CspAI	ACCGGT	1 cut(s)	628
CviAII	CATG	5 cut(s)	192, 373, 419, 545, 779
CviJI	RGCY	7 cut(s)	255, 312, 329, 463, 557, 587, 705
CviKI_1	RGCY	7 cut(s)	255, 312, 329, 463, 557, 587, 705
CviQI	GTAC	2 cut(s)	438, 498
DdeI	CTNAG	2 cut(s)	738, 806
DinI	GGCGCC	2 cut(s)	73, 106
DpnI	GATC	4 cut(s)	12, 23, 142, 652
DpnII	GATC	4 cut(s)	10, 21, 140, 650
EaeI	YGGCCR	1 cut(s)	585
Eam1104I	CTCTTC	4 cut(s)	269, 417, 462, 831
EarI	CTCTTC	4 cut(s)	269, 417, 462, 831
Eco47I	GGWCC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	38, 440
Eco81I	CCTNAGG	1 cut(s)	738
Eco91I	GGTNACC	1 cut(s)	745
EcoO65I	GGTNACC	1 cut(s)	745
EcoRII	CCWGG	1 cut(s)	574
EcoT22I	ATGCAT	1 cut(s)	784
EgeI	GGCGCC	2 cut(s)	73, 106
EheI	GGCGCC	2 cut(s)	73, 106
FaeI	CATG	5 cut(s)	195, 376, 422, 548, 782
FalI	AAGNNNNNCTT	2 cut(s)	301, 333
FaqI	GGGAC	2 cut(s)	335, 557
FatI	CATG	5 cut(s)	191, 372, 418, 544, 778
FauI	CCCGC	1 cut(s)	270
FauNDI	CATATG	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	266, 585
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	2 cut(s)	266, 585
FspBI	CTAG	3 cut(s)	396, 429, 558
GlaI	GCGC	2 cut(s)	73, 106
GluI	GCNGC	2 cut(s)	266, 585
HaeII	RGCGCY	2 cut(s)	75, 108
HaeIII	GGCC	1 cut(s)	587
HapII	CCGG	3 cut(s)	33, 491, 629
HhaI	GCGC	2 cut(s)	74, 107
Hin1I	GRCGYC	2 cut(s)	72, 105
Hin1II	CATG	5 cut(s)	195, 376, 422, 548, 782
Hin6I	GCGC	2 cut(s)	72, 105
HinP1I	GCGC	2 cut(s)	72, 105
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	5 cut(s)	5, 44, 61, 443, 487
HpaII	CCGG	3 cut(s)	33, 491, 629
HphI	GGTGA	3 cut(s)	543, 597, 757
Hpy166II	GTNNAC	4 cut(s)	60, 391, 500, 626
Hpy188I	TCNGA	4 cut(s)	10, 21, 361, 655
Hpy188III	TCNNGA	3 cut(s)	144, 720, 737
Hpy8I	GTNNAC	4 cut(s)	60, 391, 500, 626
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	5 cut(s)	198, 280, 338, 690, 777
HpyCH4V	TGCA	4 cut(s)	569, 731, 782, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	554, 779
HpyF3I	CTNAG	2 cut(s)	738, 806
Hsp92I	GRCGYC	2 cut(s)	72, 105
Hsp92II	CATG	5 cut(s)	195, 376, 422, 548, 782
HspAI	GCGC	2 cut(s)	72, 105
KasI	GGCGCC	2 cut(s)	71, 104
Kzo9I	GATC	4 cut(s)	10, 21, 140, 650
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	791
MaeI	CTAG	3 cut(s)	396, 429, 558
MaeIII	GTNAC	2 cut(s)	631, 745
MalI	GATC	4 cut(s)	12, 23, 142, 652
MboI	GATC	4 cut(s)	10, 21, 140, 650
MflI	RGATCY	1 cut(s)	140
MluCI	AATT	4 cut(s)	248, 298, 365, 726
Mly113I	GGCGCC	2 cut(s)	72, 105
MlyI	GAGTC	2 cut(s)	38, 55
Mph1103I	ATGCAT	1 cut(s)	784
MroXI	GAANNNNTTC	1 cut(s)	476
MspI	CCGG	3 cut(s)	33, 491, 629
MspR9I	CCNGG	2 cut(s)	492, 576
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	2 cut(s)	554, 779
NarI	GGCGCC	2 cut(s)	72, 105
NciI	CCSGG	1 cut(s)	492
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	4 cut(s)	10, 21, 140, 650
NlaIII	CATG	5 cut(s)	195, 376, 422, 548, 782
NlaIV	GGNNCC	3 cut(s)	73, 106, 323
NmuCI	GTSAC	1 cut(s)	745
NsiI	ATGCAT	1 cut(s)	784
NspI	RCATGY	1 cut(s)	548
PaeI	GCATGC	1 cut(s)	548
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	3 cut(s)	5, 443, 487
PfoI	TCCNGGA	1 cut(s)	490
PinAI	ACCGGT	1 cut(s)	628
PkrI	GCNGC	2 cut(s)	267, 586
PleI	GAGTC	2 cut(s)	38, 55
PluTI	GGCGCC	2 cut(s)	75, 108
PpsI	GAGTC	2 cut(s)	38, 55
Psp6I	CCWGG	1 cut(s)	574
PspEI	GGTNACC	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	3 cut(s)	73, 106, 323
PspPI	GGNCC	1 cut(s)	322
PstNI	CAGNNNCTG	2 cut(s)	581, 737
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	2 cut(s)	439, 499
RsaNI	GTAC	2 cut(s)	438, 498
SalI	GTCGAC	1 cut(s)	58
SatI	GCNGC	2 cut(s)	266, 585
Sau3AI	GATC	4 cut(s)	10, 21, 140, 650
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	2 cut(s)	38, 55
ScrFI	CCNGG	2 cut(s)	492, 576
SetI	ASST	8 cut(s)	190, 331, 349, 559, 580, 660, 747, 752
SfaNI	GCATC	1 cut(s)	791
SfoI	GGCGCC	2 cut(s)	73, 106
SinI	GGWCC	1 cut(s)	322
SpeI	ACTAGT	1 cut(s)	428
SphI	GCATGC	1 cut(s)	548
Sse9I	AATT	4 cut(s)	248, 298, 365, 726
SsiI	CCGC	3 cut(s)	90, 263, 584
SspDI	GGCGCC	2 cut(s)	71, 104
SspMI	CTAG	3 cut(s)	396, 429, 558
StyD4I	CCNGG	2 cut(s)	490, 574
TaqI	TCGA	3 cut(s)	24, 59, 80
TaqII	GACCGA	1 cut(s)	339
TasI	AATT	4 cut(s)	248, 298, 365, 726
TatI	WGTACW	1 cut(s)	497
TauI	GCSGC	1 cut(s)	587
TfiI	GAWTC	3 cut(s)	5, 443, 487
TscAI	CASTG	2 cut(s)	391, 600
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	4 cut(s)	180, 221, 287, 435
TspRI	CASTG	2 cut(s)	391, 600
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	476
XspI	CTAG	3 cut(s)	396, 429, 558
Zsp2I	ATGCAT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.