RLG00000035457

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
67140757 .. 67142933
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035457

Sequence Viewer

Length: 1674 bp
ATGAATAAAGAGAACACTAACTTGAACAAGATTGAAGAAAAGAAATTCAGCCTCCAGCAGCAAATGAAGAGGAAAAAGAAGGGAGGATACAGTTTGCGTAAAAGCCTTGCGTGGGATCGAGCTTTCTTTGAGGAAGAAGGTGTATTGAACTCCGAAGAATTGTCCATGATTACTGGGAGTGTAAACTCTAGTGGGTCGTTGTCAGTCATCCATGAAGAGACTAGTTGTGGTACTGATTCAGCGTATCTTCAGGGGCTTGAAGAGAACTTATTCAAGGAGATTCCAGGAAGTACACCAAAGAAAGATGGGATTACTGGTGGCAGACCATTGCCAAAGCATGCGTCACCAGCTAGAGATAATGCAGTCCCAGGTTGTGTTTTCTGTAGATTAAAGATTGTTGCTGGAAAATCCTTGACTGCTAAAAGTTGTACTCGTCCAACCAGAAGAAATGTGGCCAGTTCAGTGAAGTCTTCACCAACCAAAGCACAATGTATGCTGGTTACAGAAGCAAACAATGGATCAGAGGTTATCACAAAACAAGCACTTCCTTCTACCAGTCATACATCATATGGCCGTGATGACATATCCAGAAAAATTGCAGTTCCTGAGGAGGTGACCTCAAAACAAGCACTTCCTTCTGCCAGTCATGCATCATACTGCCGTGATGACAGACTTAGAAAAGTTACAGTTCCTCTTCCTCACACTGGTGTGAACTGGCCACATACTCAACTCCAAACATCAAAACCATCAGGTTTGCGGATGCCATCACCATCACCGAGTTTCTTTAATCTGTTTAGGCAAATTGGTTCTGTAAATCCAAGTCATGAATTGAGGCCGCCTTCACTTGGGAAAATTCCAAATTGTTCAAGTTCAAGTTCCGTTCTATCTGATACTAGCCCTGCGGCAATGGACAAAGTGGATTCAGTCTCGCAAATAAGACATGTGCAGGAGGAACTGAAGGTATCATCTAAGTCAAAAGGTTATGGTCTGACAGAGGATCACAGAAAGTTAAATAGCATACCTGTTCATGGCTACCAACAATCTACCCCACAAGCAGAACCAAATATTACTGAAGAGCTTTCTTACATGGAAGATGTAGAATTTCAGAGGAGTGATGATAAATGTCTAATGGATCAGGGGTTGTCTCTTGTATTTCCTCCAAAAAGTACAGAGATTCAGGGCCACAGTTTCGAGAAGGTTGCAGATGCTAGTCCAGAAGTCCAAAATGTTAGTGCAGCTGAATACAAAATAGTTGATGCCTTCTCTTACTCTAGATGTGAAGATCAAGCAAAAGGTGATATTAATACATTGAAGACAATGAGGAGGAATCTGCATGTGGAAGATGCACAAATGCTGGCTTCAGATAGAAAAACAGATGAAATCAATGATGTCAAGCTGAGCACATCAGCTCCTGATAATTGGCAATTGGTGAAAGTTGATAGTGAAAAACCTGAACACCAAGACCTTTCAAATATCTGCTACATTGGAGAACAAGTTTACCAGGATGAAAGATTAAACTTAAATGATTGTGTATTGGATGGTTTTGATGTTCTTCCTGAAGATTCCCAGCAGAACAATGTTCTTCTGCGTTTTGCGTCAAAGGAAGCAGAAGGAAATGGTGCCGGCTCAATTGAACCCGCAATTTCCAGAAACCTTTCTGTTTACCACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

558

Amino Acids

61.42

Weight (kDa)

6.2

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1619
AciI CCGC 4 cut(s) 757, 836, 902, 1638
AclWI GGATC 4 cut(s) 123, 526, 1005, 1140
AcoI YGGCCR 3 cut(s) 453, 571, 716
AcsI RAATTY 3 cut(s) 44, 852, 1100
AcuI CTGAAG 5 cut(s) 233, 977, 1092, 1344, 1578
AfaI GTAC 4 cut(s) 232, 292, 430, 1168
AfiI CCNNNNNNNGG 4 cut(s) 112, 704, 845, 1028
AflIII ACRYGT 1 cut(s) 940
AhlI ACTAGT 1 cut(s) 221
AjnI CCWGG 3 cut(s) 283, 367, 1500
AleI CACNNNNGTG 2 cut(s) 705, 707
AluBI AGCT 6 cut(s) 122, 350, 1078, 1238, 1396, 1409
AluI AGCT 6 cut(s) 122, 350, 1078, 1238, 1396, 1409
Alw21I GWGCWC 1 cut(s) 1403
Alw26I GTCTC 3 cut(s) 212, 931, 1149
AlwI GGATC 4 cut(s) 123, 526, 1005, 1140
AlwNI CAGNNNCTG 2 cut(s) 605, 1412
AoxI GGCC 5 cut(s) 453, 571, 716, 833, 1180
ApeKI GCWGC 2 cut(s) 58, 1235
ApoI RAATTY 3 cut(s) 44, 852, 1100
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AseI ATTAAT 1 cut(s) 1302
Asp700I GAANNNNTTC 2 cut(s) 269, 1654
AspS9I GGNCC 1 cut(s) 1180
AsuHPI GGTGA 7 cut(s) 336, 465, 625, 759, 765, 1307, 1441
AxyI CCTNAGG 1 cut(s) 606
BalI TGGCCA 2 cut(s) 455, 718
BanI GGYRCC 1 cut(s) 1619
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BbsI GAAGAC 2 cut(s) 462, 1319
Bbv12I GWGCWC 1 cut(s) 1403
BbvI GCAGC 2 cut(s) 70, 1247
BccI CCATC 5 cut(s) 299, 754, 772, 778, 1532
BceAI ACGGC 2 cut(s) 558, 645
BcgI CGANNNNNNTGC 2 cut(s) 1181, 1215
BciT130I CCWGG 3 cut(s) 285, 369, 1502
BciVI GTATCC 1 cut(s) 80
BcoDI GTCTC 3 cut(s) 212, 931, 1149
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 6 cut(s) 189, 222, 351, 894, 1209, 1272
BfmI CTRYAG 1 cut(s) 382
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 4 cut(s) 59, 836, 903, 1236
BlpI GCTNAGC 1 cut(s) 1397
BlsI GCNGC 4 cut(s) 60, 837, 904, 1237
Bme1390I CCNGG 3 cut(s) 285, 369, 1502
BmgT120I GGNCC 1 cut(s) 1180
BmiI GGNNCC 1 cut(s) 1621
BmrFI CCNGG 3 cut(s) 285, 369, 1502
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 5 cut(s) 659, 750, 1195, 1246, 1333
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 2 cut(s) 462, 1319
BplI GAGNNNNNCTC 2 cut(s) 602, 634
BpmI CTGGAG 1 cut(s) 38
Bpu1102I GCTNAGC 1 cut(s) 1397
BsaJI CCNNGG 1 cut(s) 367
BsaXI ACNNNNNCTCC 4 cut(s) 1393, 1423, 1479, 1509
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 704, 845, 1028
Bse118I RCCGGY 1 cut(s) 1622
Bse1I ACTGG 7 cut(s) 178, 319, 456, 555, 642, 709, 719
Bse21I CCTNAGG 1 cut(s) 606
Bse3DI GCAATG 2 cut(s) 326, 912
BseBI CCWGG 3 cut(s) 285, 369, 1502
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 4 cut(s) 207, 765, 1510, 1543
BseLI CCNNNNNNNGG 4 cut(s) 112, 704, 845, 1028
BseMI GCAATG 2 cut(s) 326, 912
BseMII CTCAG 2 cut(s) 597, 1388
BseNI ACTGG 7 cut(s) 178, 319, 456, 555, 642, 709, 719
BseRI GAGGAG 3 cut(s) 623, 1123, 1336
BseXI GCAGC 2 cut(s) 70, 1247
BseYI CCCAGC 1 cut(s) 1566
BsgI GTGCAG 2 cut(s) 965, 1254
BshFI GGCC 5 cut(s) 455, 573, 718, 835, 1182
BshNI GGYRCC 1 cut(s) 1619
BsiHKAI GWGCWC 1 cut(s) 1403
BsiSI CCGG 1 cut(s) 1623
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 4 cut(s) 112, 704, 845, 1028
BsmAI GTCTC 3 cut(s) 212, 931, 1149
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 5 cut(s) 455, 573, 718, 835, 1182
Bsp1286I GDGCHC 1 cut(s) 1403
Bsp143I GATC 5 cut(s) 115, 518, 997, 1132, 1282
Bsp1720I GCTNAGC 1 cut(s) 1397
BspACI CCGC 4 cut(s) 757, 836, 902, 1638
BspANI GGCC 5 cut(s) 455, 573, 718, 835, 1182
BspCNI CTCAG 2 cut(s) 598, 1389
BspHI TCATGA 1 cut(s) 823
BspLI GGNNCC 1 cut(s) 1621
BspPI GGATC 4 cut(s) 123, 526, 1005, 1140
BspQI GCTCTTC 1 cut(s) 1068
BspT107I GGYRCC 1 cut(s) 1619
BsrDI GCAATG 2 cut(s) 326, 912
BsrFI RCCGGY 1 cut(s) 1622
BsrI ACTGG 7 cut(s) 178, 319, 456, 555, 642, 709, 719
BssAI RCCGGY 1 cut(s) 1622
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 5 cut(s) 115, 518, 997, 1132, 1282
Bst2UI CCWGG 3 cut(s) 285, 369, 1502
Bst4CI ACNGT 3 cut(s) 92, 688, 1187
Bst6I CTCTTC 5 cut(s) 62, 210, 255, 699, 1068
BstC8I GCNNGC 3 cut(s) 339, 1356, 1624
BstDEI CTNAG 4 cut(s) 606, 674, 969, 1397
BstEII GGTNACC 1 cut(s) 613
BstF5I GGATG 4 cut(s) 207, 765, 1510, 1543
BstKTI GATC 5 cut(s) 118, 521, 1000, 1135, 1285
BstMAI GTCTC 3 cut(s) 212, 931, 1149
BstMBI GATC 5 cut(s) 115, 518, 997, 1132, 1282
BstMWI GCNNNNNNNGC 2 cut(s) 347, 647
BstNI CCWGG 3 cut(s) 285, 369, 1502
BstNSI RCATGY 3 cut(s) 341, 944, 1337
BstPI GGTNACC 1 cut(s) 613
BstSCI CCNGG 3 cut(s) 283, 367, 1500
BstSFI CTRYAG 1 cut(s) 382
BstV1I GCAGC 2 cut(s) 70, 1247
BstV2I GAAGAC 2 cut(s) 462, 1319
Bsu36I CCTNAGG 1 cut(s) 606
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 5 cut(s) 455, 573, 718, 835, 1182
BtsCI GGATG 4 cut(s) 207, 765, 1510, 1543
BtsIMutI CAGTG 2 cut(s) 468, 702
Cac8I GCNNGC 3 cut(s) 339, 1356, 1624
CaiI CAGNNNCTG 2 cut(s) 605, 1412
CciI TCATGA 1 cut(s) 823
Cfr10I RCCGGY 1 cut(s) 1622
Cfr13I GGNCC 1 cut(s) 1180
CseI GACGC 2 cut(s) 330, 1584
Csp6I GTAC 4 cut(s) 231, 291, 429, 1167
CviAII CATG 9 cut(s) 166, 212, 338, 647, 824, 941, 1028, 1087, 1334
CviQI GTAC 4 cut(s) 231, 291, 429, 1167
DdeI CTNAG 4 cut(s) 606, 674, 969, 1397
DpnI GATC 5 cut(s) 117, 520, 999, 1134, 1284
DpnII GATC 5 cut(s) 115, 518, 997, 1132, 1282
EaeI YGGCCR 3 cut(s) 453, 571, 716
Eam1104I CTCTTC 5 cut(s) 62, 210, 255, 699, 1068
EarI CTCTTC 5 cut(s) 62, 210, 255, 699, 1068
Eco57I CTGAAG 5 cut(s) 233, 977, 1092, 1344, 1578
Eco81I CCTNAGG 1 cut(s) 606
Eco91I GGTNACC 1 cut(s) 613
EcoO65I GGTNACC 1 cut(s) 613
EcoRII CCWGG 3 cut(s) 283, 367, 1500
EcoT22I ATGCAT 1 cut(s) 652
FaeI CATG 9 cut(s) 169, 215, 341, 650, 827, 944, 1031, 1090, 1337
FaqI GGGAC 1 cut(s) 350
FatI CATG 9 cut(s) 165, 211, 337, 646, 823, 940, 1027, 1086, 1333
FauI CCCGC 1 cut(s) 1645
FauNDI CATATG 1 cut(s) 568
Fnu4HI GCNGC 4 cut(s) 59, 836, 903, 1236
FokI GGATG 4 cut(s) 194, 772, 1517, 1550
Fsp4HI GCNGC 4 cut(s) 59, 836, 903, 1236
FspBI CTAG 6 cut(s) 189, 222, 351, 894, 1209, 1272
GluI GCNGC 4 cut(s) 59, 836, 903, 1236
GsaI CCCAGC 1 cut(s) 1570
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 5 cut(s) 455, 573, 718, 835, 1182
HapII CCGG 1 cut(s) 1623
HgaI GACGC 2 cut(s) 330, 1584
Hin1II CATG 9 cut(s) 169, 215, 341, 650, 827, 944, 1031, 1090, 1337
HinfI GANTC 6 cut(s) 236, 280, 920, 1174, 1327, 1562
HpaII CCGG 1 cut(s) 1623
HphI GGTGA 7 cut(s) 336, 465, 625, 759, 765, 1307, 1441
Hpy166II GTNNAC 5 cut(s) 184, 293, 712, 1498, 1663
Hpy188I TCNGA 6 cut(s) 154, 523, 889, 990, 1107, 1363
Hpy188III TCNNGA 9 cut(s) 588, 605, 824, 1192, 1214, 1272, 1412, 1556, 1647
Hpy8I GTNNAC 5 cut(s) 184, 293, 712, 1498, 1663
HpyAV CCTTC 9 cut(s) 73, 131, 558, 645, 849, 952, 1189, 1270, 1604
HpyCH4III ACNGT 3 cut(s) 92, 688, 1187
HpyCH4V TGCA 8 cut(s) 362, 599, 650, 946, 1202, 1235, 1333, 1346
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 647
HpyF3I CTNAG 4 cut(s) 606, 674, 969, 1397
Hsp92II CATG 9 cut(s) 169, 215, 341, 650, 827, 944, 1031, 1090, 1337
KroI GCCGGC 1 cut(s) 1622
KroNI GCCGGC 1 cut(s) 1624
Kzo9I GATC 5 cut(s) 115, 518, 997, 1132, 1282
LguI GCTCTTC 1 cut(s) 1068
LmnI GCTCC 1 cut(s) 1414
Lsp1109I GCAGC 2 cut(s) 70, 1247
LweI GCATC 5 cut(s) 659, 750, 1195, 1246, 1333
MaeI CTAG 6 cut(s) 189, 222, 351, 894, 1209, 1272
MaeIII GTNAC 4 cut(s) 342, 499, 613, 682
MalI GATC 5 cut(s) 117, 520, 999, 1134, 1284
MboI GATC 5 cut(s) 115, 518, 997, 1132, 1282
MfeI CAATTG 2 cut(s) 1424, 1629
MhlI GDGCHC 1 cut(s) 1403
MlsI TGGCCA 2 cut(s) 455, 718
MluNI TGGCCA 2 cut(s) 455, 718
MmeI TCCRAC 1 cut(s) 461
Mox20I TGGCCA 2 cut(s) 455, 718
Mph1103I ATGCAT 1 cut(s) 652
MroNI GCCGGC 1 cut(s) 1622
MroXI GAANNNNTTC 2 cut(s) 269, 1654
MscI TGGCCA 2 cut(s) 455, 718
MseI TTAA 6 cut(s) 389, 786, 1010, 1302, 1514, 1520
MslI CAYNNNNRTG 2 cut(s) 705, 707
Msp20I TGGCCA 2 cut(s) 455, 718
MspA1I CMGCKG 1 cut(s) 1238
MspI CCGG 1 cut(s) 1623
MspR9I CCNGG 3 cut(s) 285, 369, 1502
MunI CAATTG 2 cut(s) 1424, 1629
MvaI CCWGG 3 cut(s) 285, 369, 1502
MwoI GCNNNNNNNGC 2 cut(s) 347, 647
NaeI GCCGGC 1 cut(s) 1624
NdeI CATATG 1 cut(s) 568
NdeII GATC 5 cut(s) 115, 518, 997, 1132, 1282
NgoMIV GCCGGC 1 cut(s) 1622
NlaIII CATG 9 cut(s) 169, 215, 341, 650, 827, 944, 1031, 1090, 1337
NlaIV GGNNCC 1 cut(s) 1621
NmuCI GTSAC 2 cut(s) 342, 613
NsiI ATGCAT 1 cut(s) 652
NspI RCATGY 3 cut(s) 341, 944, 1337
OliI CACNNNNGTG 2 cut(s) 705, 707
PaeI GCATGC 1 cut(s) 341
PagI TCATGA 1 cut(s) 823
PciI ACATGT 1 cut(s) 940
PciSI GCTCTTC 1 cut(s) 1068
PdiI GCCGGC 1 cut(s) 1624
PdmI GAANNNNTTC 2 cut(s) 269, 1654
PfeI GAWTC 6 cut(s) 236, 280, 920, 1174, 1327, 1562
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 4 cut(s) 60, 837, 904, 1237
PscI ACATGT 1 cut(s) 940
PshBI ATTAAT 1 cut(s) 1302
Psp6I CCWGG 3 cut(s) 283, 367, 1500
PspEI GGTNACC 1 cut(s) 613
PspFI CCCAGC 1 cut(s) 1566
PspGI CCWGG 3 cut(s) 283, 367, 1500
PspN4I GGNNCC 1 cut(s) 1621
PspPI GGNCC 1 cut(s) 1180
PstNI CAGNNNCTG 2 cut(s) 605, 1412
PvuII CAGCTG 1 cut(s) 1238
RsaI GTAC 4 cut(s) 232, 292, 430, 1168
RsaNI GTAC 4 cut(s) 231, 291, 429, 1167
RseI CAYNNNNRTG 2 cut(s) 705, 707
SapI GCTCTTC 1 cut(s) 1068
SaqAI TTAA 6 cut(s) 389, 786, 1010, 1302, 1514, 1520
SatI GCNGC 4 cut(s) 59, 836, 903, 1236
Sau3AI GATC 5 cut(s) 115, 518, 997, 1132, 1282
Sau96I GGNCC 1 cut(s) 1180
ScrFI CCNGG 3 cut(s) 285, 369, 1502
SduI GDGCHC 1 cut(s) 1403
SfaNI GCATC 5 cut(s) 659, 750, 1195, 1246, 1333
SfcI CTRYAG 1 cut(s) 382
SmiMI CAYNNNNRTG 2 cut(s) 705, 707
SpeI ACTAGT 1 cut(s) 221
SphI GCATGC 1 cut(s) 341
SsiI CCGC 4 cut(s) 757, 836, 902, 1638
SspI AATATT 1 cut(s) 1066
SspMI CTAG 6 cut(s) 189, 222, 351, 894, 1209, 1272
StyD4I CCNGG 3 cut(s) 283, 367, 1500
TaaI ACNGT 3 cut(s) 92, 688, 1187
TaqI TCGA 2 cut(s) 118, 1191
TatI WGTACW 3 cut(s) 290, 428, 1166
TauI GCSGC 2 cut(s) 838, 905
TfiI GAWTC 6 cut(s) 236, 280, 920, 1174, 1327, 1562
Tru1I TTAA 6 cut(s) 389, 786, 1010, 1302, 1514, 1520
Tru9I TTAA 6 cut(s) 389, 786, 1010, 1302, 1514, 1520
TscAI CASTG 2 cut(s) 468, 709
TseFI GTSAC 2 cut(s) 342, 613
TseI GCWGC 2 cut(s) 58, 1235
Tsp45I GTSAC 2 cut(s) 342, 613
TspDTI ATGAA 7 cut(s) 17, 80, 228, 840, 1016, 1392, 1521
TspGWI ACGGA 1 cut(s) 868
TspRI CASTG 2 cut(s) 468, 709
VspI ATTAAT 1 cut(s) 1302
XapI RAATTY 3 cut(s) 44, 852, 1100
XbaI TCTAGA 1 cut(s) 1271
XceI RCATGY 3 cut(s) 341, 944, 1337
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XmnI GAANNNNTTC 2 cut(s) 269, 1654
XspI CTAG 6 cut(s) 189, 222, 351, 894, 1209, 1272
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.