Rorug05G0339600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004509
Physical Location & Seq
Forward (+)
41298974 .. 41301254
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0339600.1

Sequence Viewer

Length: 1134 bp
ATGGCTGCTTCAACTGAGCGCGTAGATGTGTTCTGGGACTCGGGCATGCTGAACCATAACTCGGGCACCGGAGTATTCGACACTGGAATGGATCCTGGATTCCTTGACGTGTTAGAAAAGCACCCAGAGAACTCTGATAGAGTCAAGAACATGGTTTCTATTCTAAAGCGAGGCCCAATCTCTCCCTACATTTCTTGGCTTCCTGGAAGGCATGCCCAGCTTCCTGAATTGTTCACTTTCCACTCTCCAGAGTACATAAATGAACTAGTTGAAGCAGATAAAGAGGGAGGTAAGATGCTATGTGCCGGGACTTTCTTGAACCCCGGCTCGTGGGATGCCTCCCTTCTTGCTGCTGGTACTACACTATCCGCAATGAAGCATGTGCTTGACGGAAATGGCAAAATTGCTTATGCATTGGTCAGGCCTCCGGGTCACCATGCTCAGCCTACTCGAGCTGATGGCTACTGCTTCCTTAACAATGCTGGTCTTGCTGTTCAGCTTGCTTTAGACTCTGGCTGTGCAAAGGTCACGGTGATAGACATTGATGTTCATTATGGCAATGGGACCGCTGAGGGGTTTTATCGGTCTGATAAGGTTCTTACAACTTCCCTTCATATGAATCATGGTACTTGGGGTCCATCTCACCCACAGAATGGCTCTATTCATGAGCTCGGTGAAGGGGAGGGCTTCGGTTATAATTTGAATATACCTTTGCCCAATGGGACAGGGGACCGAGGATATGTGTATGCTATGAACAAGTTGGTTGCCCCGGCAGTCAGAAAGTTTGAGCCTGAAATGATAGTTTTGGTCATTGGCCAAGATTCTAGTGCTTTTGATCCAAATGGAAGGCAATGTTTGACAATGGAGGGTTATCGAGAGATTGGCAAGATAGTTCGTAGCCTGGTGGATAGGCACTGTGGTGGACGTCTTCTGATTGTCCAAGAAGGTGGATATCACATTACGTACTCAGCCTATTGTCTTCATGCAACACTTGAGGGTGTGCTCAACCTACCGATTCCTTTGTTATCTGATCCCATTGCTTATTACCCTGAGGACGAGCGATTATCTGTAGAACGTATTGAATCCATTAAAAGGTTCCAGAAAGATACTGTACTGTTTTTGAAAGGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

377

Amino Acids

41.28

Weight (kDa)

5.79

Isoelectric Point (pI)

30.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 41 - 332 8.7e-83 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
AatII GACGTC 1 cut(s) 928
AccB1I GGYRCC 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 653
AccII CGCG 1 cut(s) 21
AciI CCGC 2 cut(s) 369, 567
AclWI GGATC 4 cut(s) 86, 99, 830, 1025
AcoI YGGCCR 1 cut(s) 814
AcyI GRCGYC 1 cut(s) 925
AfaI GTAC 5 cut(s) 254, 358, 628, 965, 1113
AfiI CCNNNNNNNGG 5 cut(s) 61, 330, 573, 653, 1092
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 6 cut(s) 12, 272, 319, 703, 1082, 1123
AhlI ACTAGT 1 cut(s) 265
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 3 cut(s) 94, 202, 900
AleI CACNNNNGTG 1 cut(s) 918
AluBI AGCT 4 cut(s) 220, 455, 499, 670
AluI AGCT 4 cut(s) 220, 455, 499, 670
Alw21I GWGCWC 2 cut(s) 672, 1005
AlwI GGATC 4 cut(s) 86, 99, 830, 1025
Ama87I CYCGRG 3 cut(s) 40, 61, 450
AoxI GGCC 3 cut(s) 172, 422, 814
ApeKI GCWGC 2 cut(s) 5, 350
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 4 cut(s) 173, 564, 635, 730
AsuC2I CCSGG 4 cut(s) 307, 324, 429, 770
AsuHPI GGTGA 4 cut(s) 425, 544, 635, 686
AvaI CYCGRG 3 cut(s) 40, 61, 450
AvaII GGWCC 3 cut(s) 564, 635, 730
AxyI CCTNAGG 1 cut(s) 1050
BaeGI GKGCMC 1 cut(s) 68
BalI TGGCCA 1 cut(s) 816
BamHI GGATCC 1 cut(s) 91
BanI GGYRCC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 672
BauI CACGAG 1 cut(s) 328
BbsI GAAGAC 2 cut(s) 920, 971
Bbv12I GWGCWC 2 cut(s) 672, 1005
BbvCI CCTCAGC 1 cut(s) 570
BbvI GCAGC 1 cut(s) 337
BccI CCATC 2 cut(s) 452, 646
BciT130I CCWGG 3 cut(s) 96, 204, 902
BcnI CCSGG 4 cut(s) 307, 324, 429, 770
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 2 cut(s) 266, 825
BfmI CTRYAG 1 cut(s) 1068
BisI GCNGC 2 cut(s) 6, 351
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 2 cut(s) 7, 352
Bme1390I CCNGG 7 cut(s) 96, 204, 307, 324, 429, 770, 902
Bme18I GGWCC 3 cut(s) 564, 635, 730
BmeT110I CYCGRG 3 cut(s) 40, 61, 450
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 4 cut(s) 173, 564, 635, 730
BmiI GGNNCC 6 cut(s) 67, 93, 565, 636, 731, 1097
BmrFI CCNGG 7 cut(s) 96, 204, 307, 324, 429, 770, 902
BmsI GCATC 2 cut(s) 285, 325
BpiI GAAGAC 2 cut(s) 920, 971
BpmI CTGGAG 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 570
Bpu1102I GCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 1013
BpuMI CCSGG 4 cut(s) 307, 324, 429, 770
BsaAI YACGTR 1 cut(s) 963
BsaHI GRCGYC 1 cut(s) 925
BsaJI CCNNGG 3 cut(s) 322, 733, 768
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 5 cut(s) 61, 330, 573, 653, 1092
Bse1I ACTGG 1 cut(s) 88
Bse21I CCTNAGG 1 cut(s) 1050
Bse3DI GCAATG 4 cut(s) 378, 565, 857, 1035
BseBI CCWGG 3 cut(s) 96, 204, 902
BseDI CCNNGG 3 cut(s) 322, 733, 768
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 5 cut(s) 61, 330, 573, 653, 1092
BseMI GCAATG 4 cut(s) 378, 565, 857, 1035
BseMII CTCAG 5 cut(s) 6, 455, 561, 981, 1041
BseNI ACTGG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 337
BseYI CCCAGC 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 3 cut(s) 174, 424, 816
BshNI GGYRCC 1 cut(s) 65
BsiHKAI GWGCWC 2 cut(s) 672, 1005
BsiHKCI CYCGRG 3 cut(s) 40, 61, 450
BsiSI CCGG 5 cut(s) 69, 306, 324, 428, 770
BslFI GGGAC 5 cut(s) 50, 322, 577, 736, 743
BslI CCNNNNNNNGG 5 cut(s) 61, 330, 573, 653, 1092
BsmFI GGGAC 5 cut(s) 50, 322, 577, 736, 743
BsnI GGCC 3 cut(s) 174, 424, 816
BsoBI CYCGRG 3 cut(s) 40, 61, 450
Bsp1286I GDGCHC 3 cut(s) 68, 672, 1005
Bsp143I GATC 3 cut(s) 91, 835, 1030
Bsp1720I GCTNAGC 1 cut(s) 441
BspACI CCGC 2 cut(s) 369, 567
BspANI GGCC 3 cut(s) 174, 424, 816
BspCNI CTCAG 5 cut(s) 7, 454, 562, 980, 1042
BspFNI CGCG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 6 cut(s) 67, 93, 565, 636, 731, 1097
BspPI GGATC 4 cut(s) 86, 99, 830, 1025
BspT107I GGYRCC 1 cut(s) 65
BsrDI GCAATG 4 cut(s) 378, 565, 857, 1035
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 3 cut(s) 322, 733, 768
BssMI GATC 3 cut(s) 91, 835, 1030
BssNI GRCGYC 1 cut(s) 925
BssSI CACGAG 1 cut(s) 328
Bst2BI CACGAG 1 cut(s) 328
Bst2UI CCWGG 3 cut(s) 96, 204, 902
Bst4CI ACNGT 4 cut(s) 532, 917, 1111, 1116
BstACI GRCGYC 1 cut(s) 925
BstBAI YACGTR 1 cut(s) 963
BstC8I GCNNGC 3 cut(s) 47, 213, 501
BstDEI CTNAG 5 cut(s) 15, 441, 570, 967, 1050
BstEII GGTNACC 1 cut(s) 431
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 3 cut(s) 94, 838, 1033
BstMBI GATC 3 cut(s) 91, 835, 1030
BstMWI GCNNNNNNNGC 2 cut(s) 217, 488
BstNI CCWGG 3 cut(s) 96, 204, 902
BstNSI RCATGY 3 cut(s) 49, 215, 383
BstPI GGTNACC 1 cut(s) 431
BstSCI CCNGG 7 cut(s) 94, 202, 305, 322, 427, 768, 900
BstSFI CTRYAG 1 cut(s) 1068
BstSLI GKGCMC 1 cut(s) 68
BstSNI TACGTA 1 cut(s) 963
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 2 cut(s) 920, 971
BstX2I RGATCY 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 947
BstYI RGATCY 1 cut(s) 91
Bsu36I CCTNAGG 1 cut(s) 1050
BsuRI GGCC 3 cut(s) 174, 424, 816
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 2 cut(s) 81, 913
Cac8I GCNNGC 3 cut(s) 47, 213, 501
CciI TCATGA 1 cut(s) 664
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 4 cut(s) 173, 564, 635, 730
Csp6I GTAC 5 cut(s) 253, 357, 627, 964, 1112
CviAII CATG 8 cut(s) 46, 151, 212, 380, 437, 623, 665, 983
CviQI GTAC 5 cut(s) 253, 357, 627, 964, 1112
DdeI CTNAG 5 cut(s) 15, 441, 570, 967, 1050
DpnI GATC 3 cut(s) 93, 837, 1032
DpnII GATC 3 cut(s) 91, 835, 1030
EaeI YGGCCR 1 cut(s) 814
Ecl136II GAGCTC 1 cut(s) 670
Eco105I TACGTA 1 cut(s) 963
Eco147I AGGCCT 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 672
Eco32I GATATC 1 cut(s) 953
Eco47I GGWCC 3 cut(s) 564, 635, 730
Eco53kI GAGCTC 1 cut(s) 670
Eco81I CCTNAGG 1 cut(s) 1050
Eco88I CYCGRG 3 cut(s) 40, 61, 450
Eco91I GGTNACC 1 cut(s) 431
EcoICRI GAGCTC 1 cut(s) 670
EcoO65I GGTNACC 1 cut(s) 431
EcoRII CCWGG 3 cut(s) 94, 202, 900
EcoRV GATATC 1 cut(s) 953
EcoT22I ATGCAT 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 672
FaeI CATG 8 cut(s) 49, 154, 215, 383, 440, 626, 668, 986
FaqI GGGAC 5 cut(s) 50, 322, 577, 736, 743
FatI CATG 8 cut(s) 45, 150, 211, 379, 436, 622, 664, 982
FauNDI CATATG 1 cut(s) 615
Fnu4HI GCNGC 2 cut(s) 6, 351
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 1 cut(s) 672
Fsp4HI GCNGC 2 cut(s) 6, 351
FspBI CTAG 2 cut(s) 266, 825
GlaI GCGC 1 cut(s) 20
GluI GCNGC 2 cut(s) 6, 351
GsaI CCCAGC 1 cut(s) 220
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 3 cut(s) 174, 424, 816
HapII CCGG 5 cut(s) 69, 306, 324, 428, 770
HhaI GCGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 925
Hin1II CATG 8 cut(s) 49, 154, 215, 383, 440, 626, 668, 986
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 8 cut(s) 38, 99, 141, 509, 619, 821, 1015, 1082
HpaII CCGG 5 cut(s) 69, 306, 324, 428, 770
HphI GGTGA 4 cut(s) 425, 544, 635, 686
Hpy166II GTNNAC 2 cut(s) 234, 923
Hpy188I TCNGA 5 cut(s) 136, 589, 779, 933, 1030
Hpy188III TCNNGA 7 cut(s) 145, 224, 248, 316, 665, 875, 1099
Hpy8I GTNNAC 2 cut(s) 234, 923
HpyAV CCTTC 6 cut(s) 201, 353, 620, 671, 840, 938
HpyCH4III ACNGT 4 cut(s) 532, 917, 1111, 1116
HpyCH4IV ACGT 4 cut(s) 108, 925, 962, 1075
HpyCH4V TGCA 3 cut(s) 413, 521, 986
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 488
HpyF3I CTNAG 5 cut(s) 15, 441, 570, 967, 1050
HpySE526I ACGT 4 cut(s) 108, 925, 962, 1075
Hsp92I GRCGYC 1 cut(s) 925
Hsp92II CATG 8 cut(s) 49, 154, 215, 383, 440, 626, 668, 986
HspAI GCGC 1 cut(s) 19
Kzo9I GATC 3 cut(s) 91, 835, 1030
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 2 cut(s) 285, 325
MaeI CTAG 2 cut(s) 266, 825
MaeII ACGT 4 cut(s) 108, 925, 962, 1075
MaeIII GTNAC 2 cut(s) 431, 526
MalI GATC 3 cut(s) 93, 837, 1032
MboI GATC 3 cut(s) 91, 835, 1030
MboII GAAGA 2 cut(s) 920, 971
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 3 cut(s) 68, 672, 1005
MlsI TGGCCA 1 cut(s) 816
MluCI AATT 3 cut(s) 227, 402, 697
MluNI TGGCCA 1 cut(s) 816
MlyI GAGTC 3 cut(s) 32, 150, 503
Mox20I TGGCCA 1 cut(s) 816
Mph1103I ATGCAT 1 cut(s) 415
MscI TGGCCA 1 cut(s) 816
MseI TTAA 3 cut(s) 474, 1089, 1132
MslI CAYNNNNRTG 2 cut(s) 86, 918
Msp20I TGGCCA 1 cut(s) 816
MspA1I CMGCKG 1 cut(s) 569
MspI CCGG 5 cut(s) 69, 306, 324, 428, 770
MspR9I CCNGG 7 cut(s) 96, 204, 307, 324, 429, 770, 902
MvaI CCWGG 3 cut(s) 96, 204, 902
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 217, 488
NciI CCSGG 4 cut(s) 307, 324, 429, 770
NdeI CATATG 1 cut(s) 615
NdeII GATC 3 cut(s) 91, 835, 1030
NlaIII CATG 8 cut(s) 49, 154, 215, 383, 440, 626, 668, 986
NlaIV GGNNCC 6 cut(s) 67, 93, 565, 636, 731, 1097
NmuCI GTSAC 2 cut(s) 431, 526
NsiI ATGCAT 1 cut(s) 415
NspI RCATGY 3 cut(s) 49, 215, 383
OliI CACNNNNGTG 1 cut(s) 918
PaeI GCATGC 2 cut(s) 49, 215
PaeR7I CTCGAG 1 cut(s) 450
PagI TCATGA 1 cut(s) 664
PceI AGGCCT 1 cut(s) 424
PfeI GAWTC 5 cut(s) 99, 619, 821, 1015, 1082
PflMI CCANNNNNTGG 1 cut(s) 653
PfoI TCCNGGA 2 cut(s) 94, 202
PkrI GCNGC 2 cut(s) 7, 352
PleI GAGTC 3 cut(s) 32, 149, 503
PpsI GAGTC 3 cut(s) 32, 149, 503
Ppu21I YACGTR 1 cut(s) 963
PsiI TTATAA 1 cut(s) 696
Psp124BI GAGCTC 1 cut(s) 672
Psp6I CCWGG 3 cut(s) 94, 202, 900
PspEI GGTNACC 1 cut(s) 431
PspFI CCCAGC 1 cut(s) 216
PspGI CCWGG 3 cut(s) 94, 202, 900
PspN4I GGNNCC 6 cut(s) 67, 93, 565, 636, 731, 1097
PspPI GGNCC 4 cut(s) 173, 564, 635, 730
PspXI VCTCGAGB 1 cut(s) 450
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 5 cut(s) 254, 358, 628, 965, 1113
RsaNI GTAC 5 cut(s) 253, 357, 627, 964, 1112
RseI CAYNNNNRTG 2 cut(s) 86, 918
SacI GAGCTC 1 cut(s) 672
SaqAI TTAA 3 cut(s) 474, 1089, 1132
SatI GCNGC 2 cut(s) 6, 351
Sau3AI GATC 3 cut(s) 91, 835, 1030
Sau96I GGNCC 4 cut(s) 173, 564, 635, 730
SchI GAGTC 3 cut(s) 32, 150, 503
ScrFI CCNGG 7 cut(s) 96, 204, 307, 324, 429, 770, 902
SduI GDGCHC 3 cut(s) 68, 672, 1005
SfaNI GCATC 2 cut(s) 285, 325
SfcI CTRYAG 1 cut(s) 1068
Sfr274I CTCGAG 1 cut(s) 450
SinI GGWCC 3 cut(s) 564, 635, 730
SlaI CTCGAG 1 cut(s) 450
SmiMI CAYNNNNRTG 2 cut(s) 86, 918
SmlI CTYRAG 2 cut(s) 450, 992
SmoI CTYRAG 2 cut(s) 450, 992
SnaBI TACGTA 1 cut(s) 963
SpeI ACTAGT 1 cut(s) 265
SphI GCATGC 2 cut(s) 49, 215
Sse9I AATT 3 cut(s) 227, 402, 697
SseBI AGGCCT 1 cut(s) 424
SsiI CCGC 2 cut(s) 369, 567
SspMI CTAG 2 cut(s) 266, 825
SstI GAGCTC 1 cut(s) 672
StuI AGGCCT 1 cut(s) 424
StyD4I CCNGG 7 cut(s) 94, 202, 305, 322, 427, 768, 900
TaaI ACNGT 4 cut(s) 532, 917, 1111, 1116
TaiI ACGT 4 cut(s) 111, 928, 965, 1078
TaqI TCGA 3 cut(s) 78, 451, 874
TaqII GACCGA 2 cut(s) 573, 747
TasI AATT 3 cut(s) 227, 402, 697
TatI WGTACW 2 cut(s) 252, 1111
TfiI GAWTC 5 cut(s) 99, 619, 821, 1015, 1082
Tru1I TTAA 3 cut(s) 474, 1089, 1132
Tru9I TTAA 3 cut(s) 474, 1089, 1132
TscAI CASTG 2 cut(s) 88, 920
TseFI GTSAC 2 cut(s) 431, 526
TseI GCWGC 2 cut(s) 5, 350
Tsp45I GTSAC 2 cut(s) 431, 526
TspDTI ATGAA 8 cut(s) 276, 389, 539, 602, 632, 653, 767, 971
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 2 cut(s) 88, 920
Van91I CCANNNNNTGG 1 cut(s) 653
VpaK11BI GGWCC 3 cut(s) 564, 635, 730
XceI RCATGY 3 cut(s) 49, 215, 383
XhoI CTCGAG 1 cut(s) 450
XspI CTAG 2 cut(s) 266, 825
ZraI GACGTC 1 cut(s) 926
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.