MD11G1122700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0004509
Physical Location & Seq
Reverse (-)
11301696 .. 11304066
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1122700.v1.1.491

Sequence Viewer

Length: 261 bp
ATGGAGTCTGACGTACTCCTCATCGAAATCGTAGGGGAAGACGACTCGCTGCTTCAATTGCCTCCAGACGACGCCGTTTCAAGCAGCAGCACCAACAAAATCTCCAAAGATGATGCCTTTTTCTTCTGCTCGCCTCTCCAACCCCTTAGATCCAAGCCACTCGGAAATTTTGACAAAGAAAAGTGGTGCAGTACAAAATTCACCCCCCAGCAAATCTCAACCTCAACGGGGTCCATGGTCTCCGGTGAAGCGAAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.33

Weight (kDa)

4.43

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 144
AcsI RAATTY 2 cut(s) 166, 197
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 2 cut(s) 15, 193
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 2 cut(s) 56, 81
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 1 cut(s) 144
ApeKI GCWGC 3 cut(s) 49, 84, 87
ApoI RAATTY 2 cut(s) 166, 197
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 193, 257
AvaII GGWCC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 36, 96, 99
BceAI ACGGC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 244
BisI GCNGC 3 cut(s) 50, 85, 88
BlsI GCNGC 3 cut(s) 51, 86, 89
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 232
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 48
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 8
BseXI GCAGC 3 cut(s) 36, 96, 99
BseYI CCCAGC 1 cut(s) 207
BsgI GTGCAG 1 cut(s) 208
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 244
Bso31I GGTCTC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 149
Bsp19I CCATGG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 144
BspTNI GGTCTC 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 149
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 234
BstACI GRCGYC 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 234
BstKTI GATC 1 cut(s) 152
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstV1I GCAGC 3 cut(s) 36, 96, 99
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 231
CseI GACGC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 14, 192
CviAII CATG 1 cut(s) 235
CviJI RGCY 2 cut(s) 157, 258
CviKI_1 RGCY 2 cut(s) 157, 258
CviQI GTAC 2 cut(s) 14, 192
DdeI CTNAG 1 cut(s) 146
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 1 cut(s) 238
FaiI YATR 1 cut(s) 236
FatI CATG 1 cut(s) 234
Fnu4HI GCNGC 3 cut(s) 50, 85, 88
Fsp4HI GCNGC 3 cut(s) 50, 85, 88
GluI GCNGC 3 cut(s) 50, 85, 88
GsaI CCCAGC 1 cut(s) 211
GsuI CTGGAG 1 cut(s) 48
HapII CCGG 1 cut(s) 243
HgaI GACGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 1 cut(s) 238
HinfI GANTC 2 cut(s) 5, 44
HpaII CCGG 1 cut(s) 243
HphI GGTGA 2 cut(s) 193, 257
Hpy188I TCNGA 2 cut(s) 10, 164
Hpy188III TCNNGA 1 cut(s) 65
Hpy99I CGWCG 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 1 cut(s) 238
Kzo9I GATC 1 cut(s) 149
LpnPI CCDG 3 cut(s) 78, 221, 256
Lsp1109I GCAGC 3 cut(s) 36, 96, 99
LweI GCATC 1 cut(s) 103
MaeII ACGT 1 cut(s) 12
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MboII GAAGA 2 cut(s) 50, 115
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 1 cut(s) 149
MluCI AATT 3 cut(s) 56, 166, 197
MlyI GAGTC 2 cut(s) 14, 38
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 4 cut(s) 29, 72, 144, 232
MspI CCGG 1 cut(s) 243
MunI CAATTG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 58
NcoI CCATGG 1 cut(s) 234
NdeII GATC 1 cut(s) 149
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 232
PkrI GCNGC 3 cut(s) 51, 86, 89
PleI GAGTC 2 cut(s) 13, 38
PpsI GAGTC 2 cut(s) 13, 38
PspFI CCCAGC 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 231
PsuI RGATCY 1 cut(s) 149
RsaI GTAC 2 cut(s) 15, 193
RsaNI GTAC 2 cut(s) 14, 192
SatI GCNGC 3 cut(s) 50, 85, 88
Sau3AI GATC 1 cut(s) 149
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 2 cut(s) 14, 38
SetI ASST 2 cut(s) 15, 224
SfaNI GCATC 1 cut(s) 103
SinI GGWCC 1 cut(s) 231
Sse9I AATT 3 cut(s) 56, 166, 197
StyI CCWWGG 1 cut(s) 234
TaiI ACGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 24
TasI AATT 3 cut(s) 56, 166, 197
TatI WGTACW 1 cut(s) 191
TseI GCWGC 3 cut(s) 49, 84, 87
VpaK11BI GGWCC 1 cut(s) 231
XapI RAATTY 2 cut(s) 166, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.