Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004509

Physical Location & Seq

Genomic Coordinates Forward (+)

67148251 .. 67149627

Gene Structure 1377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035459

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGGAAGAAACAACGCTCAGCATATCAAGGTTAACCTTGATACACAGTTCGGGAATGACATTCGTCTTTATGGGCAAGCTTCTTTGGAATTGCACAACATGGATGAAGTTCAAAGAAGAGTTTCACTGACTGCTCACGATATTAAGACAACTTCTTTAAAAAGTGGAGATTCGACCTGTCATGCCCCTCAGTTGCAGCCTGAATATGACATAATCTCTTGCCACCAAGATACTTCAATGGCGCAAATTAAATTCATGAGTGATGAAATAAATGTAATTGAAGAGGAAACTAATGTGCCAAGTGGTGAATTTGATGATGGCAAACACAATGTTCAACAAGCTAAGCAGCTTATGTCTTGCTTTAGGGCAGAAGCTAGAATACTGAACTGGAATCCAGGGGATCATGGCCTTTCATTTGAAGGTAGCAAATCTGTGGAAGAGTGCCACGAATATAACACTGGGAACAGTGAAGACATCAGTTGGAAAGTAAACTGGTGTGATGCAAGTGGATTGCAAAGCCCCCCTGATCTATCTAAGCATGAAATCTTGGAAGAAGAAAATAAACAAGTTGATGAAGGTAATGATGTGATTAAGGAACCCCTACCTGGATCTCCAGTAGAGTCCTCAGTTGCAAATTGCAGGTACTCAGTGGGTTTTAATAATGCACATAAACTATCTGGATGTCCAGAGCTTCGGCATCCAAATCTTGTAGCAGTACAAGTATCACAGGAATTGAAGCCCAGATCAGATTTGAATGGAACTTTGCTTGCAAATAATGCTTCCTGTAAGGAATGTGAGGAAACTGATGAGCTTGTTTTAGATCGGAATGATGCTTGTGGAAGTGAACCCAAGTGTTCAGATGCTTGTATGGAAGTAGCACCAGCAATACCTGATGGCACACCTGATTTGGGGGGAAAGGTTAACTACTCACAACTGGAACTTGCAGTGACTAGAAGTTCCATGGTTGAGCAATCACCAGAAAATGTTCACGGTTATACAAAGTCCAGGGATACCAACAGGCTATGTCATCAAGCTGCTTCCGTGGAGTCTGACTCATCTGCAAAGACAACCAACGAAGAAGATTCTGTGCAAACTTTGGCATGTAATTCCTTGGAAGGGAAACTAAGGTCATCTCTTATTTCTGATCAGACATCACCAAGTGGAAGCATTCTGCAGGATAATGAAGTTAATGTATTGAGCAGCAACACTTTGGCAGAGGATGCTGAAACTAATATCTTGAACATTAATCATACTCTTGACGATGAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

424

Amino Acids

46.39

Weight (kDa)

4.57

Isoelectric Point (pI)

61.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60150 AT5G60150
fragaria_vesca	FvH4_3g33790 FvH4_3g33790
malus_domestica	MD03G1109500.v1.1 MD03G1109700.v1.1 MD11G1122700.v1.1
prunus_persica	Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1 Prupe.6G092200_v2.0.a1
pyrus_communis	pycom03g08930 pycom11g10390
rosa_chinensis	RchiOBHm_Chr5g0061351 RchiOBHm_Chr5g0061361
rosa_laevigata	RLG00000035457 RLG00000035459 RLG00000035469
rosa_multiflora	Rmu_co8244331.1_g000001 Rmu_sc0000338.1_g000014 Rmu_sc0000689.1_g000017 Rmu_sc0033319.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019320 Rroxscaffold_1G00019330 Rroxscaffold_1G00019380
rosa_rugosa	Rorug05G0339600
rosa_samantha	Rh5AG401900 Rh5BG414000 Rh5CG438500 Rh5DG428600
rosa_wichuraiana	Rw5G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	630
AclWI	GGATC	2 cut(s)	408, 616
AcsI	RAATTY	2 cut(s)	251, 308
AdeI	CACNNNGTG	1 cut(s)	1160
AfaI	GTAC	2 cut(s)	644, 717
AfiI	CCNNNNNNNGG	3 cut(s)	605, 908, 1116
AgsI	TTSAA	8 cut(s)	113, 237, 281, 335, 419, 736, 754, 1240
AjnI	CCWGG	3 cut(s)	394, 604, 1004
AluBI	AGCT	7 cut(s)	80, 341, 349, 374, 691, 811, 1034
AluI	AGCT	7 cut(s)	80, 341, 349, 374, 691, 811, 1034
AlwI	GGATC	2 cut(s)	408, 616
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	4 cut(s)	196, 346, 1034, 1200
ApoI	RAATTY	2 cut(s)	251, 308
AseI	ATTAAT	1 cut(s)	1245
Asp700I	GAANNNNTTC	2 cut(s)	121, 984
AspLEI	GCGC	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	317, 966, 1146
BarI	GAAGNNNNNNTAC	2 cut(s)	363, 395
BbsI	GAAGAC	1 cut(s)	477
BbvI	GCAGC	4 cut(s)	208, 358, 1021, 1212
BccI	CCATC	2 cut(s)	311, 887
BciT130I	CCWGG	3 cut(s)	396, 606, 1006
BciVI	GTATCC	1 cut(s)	1003
BclI	TGATCA	1 cut(s)	1144
BfaI	CTAG	2 cut(s)	375, 951
BfmI	CTRYAG	2 cut(s)	1172, 1268
BfuAI	ACCTGC	1 cut(s)	630
BfuI	GTATCC	1 cut(s)	1003
BisI	GCNGC	4 cut(s)	197, 347, 1035, 1201
BlpI	GCTNAGC	2 cut(s)	18, 342
BlsI	GCNGC	4 cut(s)	198, 348, 1036, 1202
Bme1390I	CCNGG	3 cut(s)	396, 606, 1006
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	3 cut(s)	396, 606, 1006
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	5 cut(s)	490, 706, 820, 850, 1210
BmuI	ACTGGG	1 cut(s)	468
BoxI	GACNNNNGTC	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	477
BplI	GAGNNNNNCTC	2 cut(s)	1037, 1069
BpmI	CTGGAG	1 cut(s)	597
Bpu1102I	GCTNAGC	2 cut(s)	18, 342
BsaJI	CCNNGG	5 cut(s)	395, 960, 1005, 1041, 1110
Bsc4I	CCNNNNNNNGG	3 cut(s)	605, 908, 1116
Bse1I	ACTGG	5 cut(s)	392, 463, 497, 614, 939
BseBI	CCWGG	3 cut(s)	396, 606, 1006
BseDI	CCNNGG	5 cut(s)	395, 960, 1005, 1041, 1110
BseGI	GGATG	4 cut(s)	109, 686, 697, 1225
BseLI	CCNNNNNNNGG	3 cut(s)	605, 908, 1116
BseMII	CTCAG	4 cut(s)	32, 203, 639, 660
BseNI	ACTGG	5 cut(s)	392, 463, 497, 614, 939
BseXI	GCAGC	4 cut(s)	208, 358, 1021, 1212
BshFI	GGCC	1 cut(s)	408
BslI	CCNNNNNNNGG	3 cut(s)	605, 908, 1116
BsmI	GAATGC	1 cut(s)	1167
BsnI	GGCC	1 cut(s)	408
Bsp143I	GATC	6 cut(s)	400, 526, 608, 743, 820, 1144
Bsp1720I	GCTNAGC	2 cut(s)	18, 342
Bsp19I	CCATGG	1 cut(s)	960
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	4 cut(s)	31, 202, 638, 659
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	597
BspMAI	CTGCAG	1 cut(s)	1176
BspMI	ACCTGC	1 cut(s)	630
BspPI	GGATC	2 cut(s)	408, 616
BsrI	ACTGG	5 cut(s)	392, 463, 497, 614, 939
BssECI	CCNNGG	5 cut(s)	395, 960, 1005, 1041, 1110
BssMI	GATC	6 cut(s)	400, 526, 608, 743, 820, 1144
BssT1I	CCWWGG	2 cut(s)	960, 1110
Bst2UI	CCWGG	3 cut(s)	396, 606, 1006
Bst4CI	ACNGT	4 cut(s)	48, 467, 992, 1269
Bst6I	CTCTTC	3 cut(s)	112, 276, 432
BstAPI	GCANNNNNTGC	2 cut(s)	776, 1220
BstC8I	GCNNGC	2 cut(s)	78, 768
BstDEI	CTNAG	7 cut(s)	18, 189, 342, 534, 625, 646, 1124
BstDSI	CCRYGG	2 cut(s)	960, 1041
BstF5I	GGATG	4 cut(s)	109, 686, 697, 1225
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	6 cut(s)	403, 529, 611, 746, 823, 1147
BstMBI	GATC	6 cut(s)	400, 526, 608, 743, 820, 1144
BstMWI	GCNNNNNNNGC	2 cut(s)	776, 1220
BstNI	CCWGG	3 cut(s)	396, 606, 1006
BstNSI	RCATGY	1 cut(s)	1104
BstPAI	GACNNNNGTC	1 cut(s)	63
BstSCI	CCNGG	3 cut(s)	394, 604, 1004
BstSFI	CTRYAG	2 cut(s)	1172, 1268
BstV1I	GCAGC	4 cut(s)	208, 358, 1021, 1212
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
BsuI	GTATCC	1 cut(s)	1003
BsuRI	GGCC	1 cut(s)	408
BtgI	CCRYGG	2 cut(s)	960, 1041
BtsCI	GGATG	4 cut(s)	109, 686, 697, 1225
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	5 cut(s)	125, 456, 472, 654, 951
BveI	ACCTGC	1 cut(s)	630
Cac8I	GCNNGC	2 cut(s)	78, 768
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	643, 716
CviAII	CATG	7 cut(s)	100, 182, 256, 404, 539, 961, 1101
CviQI	GTAC	2 cut(s)	643, 716
DdeI	CTNAG	7 cut(s)	18, 189, 342, 534, 625, 646, 1124
DpnI	GATC	6 cut(s)	402, 528, 610, 745, 822, 1146
DpnII	GATC	6 cut(s)	400, 526, 608, 743, 820, 1144
DraI	TTTAAA	1 cut(s)	159
DraIII	CACNNNGTG	1 cut(s)	1160
Eam1104I	CTCTTC	3 cut(s)	112, 276, 432
EarI	CTCTTC	3 cut(s)	112, 276, 432
Eco130I	CCWWGG	2 cut(s)	960, 1110
EcoRII	CCWGG	3 cut(s)	394, 604, 1004
EcoT14I	CCWWGG	2 cut(s)	960, 1110
ErhI	CCWWGG	2 cut(s)	960, 1110
FaeI	CATG	7 cut(s)	103, 185, 259, 407, 542, 964, 1104
FatI	CATG	7 cut(s)	99, 181, 255, 403, 538, 960, 1100
FbaI	TGATCA	1 cut(s)	1144
Fnu4HI	GCNGC	4 cut(s)	197, 347, 1035, 1201
FokI	GGATG	4 cut(s)	116, 684, 693, 1232
Fsp4HI	GCNGC	4 cut(s)	197, 347, 1035, 1201
FspBI	CTAG	2 cut(s)	375, 951
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	4 cut(s)	197, 347, 1035, 1201
GsuI	CTGGAG	1 cut(s)	597
HaeIII	GGCC	1 cut(s)	408
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	7 cut(s)	103, 185, 259, 407, 542, 964, 1104
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	2 cut(s)	34, 922
HindII	GTYRAC	2 cut(s)	34, 922
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	6 cut(s)	170, 391, 620, 1046, 1052, 1082
HpaI	GTTAAC	2 cut(s)	34, 922
HphI	GGTGA	3 cut(s)	317, 966, 1146
Hpy166II	GTNNAC	5 cut(s)	34, 490, 845, 922, 988
Hpy188I	TCNGA	6 cut(s)	748, 825, 859, 1051, 1144, 1149
Hpy188III	TCNNGA	7 cut(s)	52, 137, 256, 678, 686, 1237, 1256
Hpy8I	GTNNAC	5 cut(s)	34, 490, 845, 922, 988
HpyAV	CCTTC	3 cut(s)	413, 569, 1109
HpyCH4III	ACNGT	4 cut(s)	48, 467, 992, 1269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	776, 1220
HpyF3I	CTNAG	7 cut(s)	18, 189, 342, 534, 625, 646, 1124
Hsp92II	CATG	7 cut(s)	103, 185, 259, 407, 542, 964, 1104
HspAI	GCGC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	1144
KspAI	GTTAAC	2 cut(s)	34, 922
Kzo9I	GATC	6 cut(s)	400, 526, 608, 743, 820, 1144
Lsp1109I	GCAGC	4 cut(s)	208, 358, 1021, 1212
LweI	GCATC	5 cut(s)	490, 706, 820, 850, 1210
MaeI	CTAG	2 cut(s)	375, 951
MaeIII	GTNAC	1 cut(s)	946
MalI	GATC	6 cut(s)	402, 528, 610, 745, 822, 1146
MboI	GATC	6 cut(s)	400, 526, 608, 743, 820, 1144
MboII	GAAGA	9 cut(s)	18, 129, 293, 449, 482, 563, 566, 1088, 1091
MflI	RGATCY	1 cut(s)	608
MluCI	AATT	8 cut(s)	89, 246, 251, 276, 308, 634, 731, 1105
MlyI	GAGTC	3 cut(s)	629, 1046, 1055
MmeI	TCCRAC	1 cut(s)	461
MnlI	CCTC	5 cut(s)	198, 277, 634, 790, 1210
MroXI	GAANNNNTTC	2 cut(s)	121, 984
MseI	TTAA	9 cut(s)	33, 144, 158, 249, 591, 657, 921, 1188, 1245
MspR9I	CCNGG	3 cut(s)	396, 606, 1006
Mva1269I	GAATGC	1 cut(s)	1167
MvaI	CCWGG	3 cut(s)	396, 606, 1006
MwoI	GCNNNNNNNGC	2 cut(s)	776, 1220
NcoI	CCATGG	1 cut(s)	960
NdeII	GATC	6 cut(s)	400, 526, 608, 743, 820, 1144
NlaIII	CATG	7 cut(s)	103, 185, 259, 407, 542, 964, 1104
NlaIV	GGNNCC	1 cut(s)	597
NmuCI	GTSAC	1 cut(s)	946
NspI	RCATGY	1 cut(s)	1104
PagI	TCATGA	1 cut(s)	255
PctI	GAATGC	1 cut(s)	1167
PdmI	GAANNNNTTC	2 cut(s)	121, 984
PfeI	GAWTC	3 cut(s)	170, 391, 1082
PkrI	GCNGC	4 cut(s)	198, 348, 1036, 1202
PleI	GAGTC	3 cut(s)	628, 1046, 1054
PpsI	GAGTC	3 cut(s)	628, 1046, 1054
PshAI	GACNNNNGTC	1 cut(s)	63
PshBI	ATTAAT	1 cut(s)	1245
Psp6I	CCWGG	3 cut(s)	394, 604, 1004
PspGI	CCWGG	3 cut(s)	394, 604, 1004
PspN4I	GGNNCC	1 cut(s)	597
PstI	CTGCAG	1 cut(s)	1176
PsuI	RGATCY	1 cut(s)	608
RsaI	GTAC	2 cut(s)	644, 717
RsaNI	GTAC	2 cut(s)	643, 716
SaqAI	TTAA	9 cut(s)	33, 144, 158, 249, 591, 657, 921, 1188, 1245
SatI	GCNGC	4 cut(s)	197, 347, 1035, 1201
Sau3AI	GATC	6 cut(s)	400, 526, 608, 743, 820, 1144
SchI	GAGTC	3 cut(s)	629, 1046, 1055
ScrFI	CCNGG	3 cut(s)	396, 606, 1006
SfaNI	GCATC	5 cut(s)	490, 706, 820, 850, 1210
SfcI	CTRYAG	2 cut(s)	1172, 1268
Sse9I	AATT	8 cut(s)	89, 246, 251, 276, 308, 634, 731, 1105
SspMI	CTAG	2 cut(s)	375, 951
StyD4I	CCNGG	3 cut(s)	394, 604, 1004
StyI	CCWWGG	2 cut(s)	960, 1110
TaaI	ACNGT	4 cut(s)	48, 467, 992, 1269
TaqI	TCGA	1 cut(s)	173
TasI	AATT	8 cut(s)	89, 246, 251, 276, 308, 634, 731, 1105
TatI	WGTACW	1 cut(s)	715
TfiI	GAWTC	3 cut(s)	170, 391, 1082
Tru1I	TTAA	9 cut(s)	33, 144, 158, 249, 591, 657, 921, 1188, 1245
Tru9I	TTAA	9 cut(s)	33, 144, 158, 249, 591, 657, 921, 1188, 1245
TscAI	CASTG	5 cut(s)	132, 463, 472, 654, 951
TseFI	GTSAC	1 cut(s)	946
TseI	GCWGC	4 cut(s)	196, 346, 1034, 1200
Tsp45I	GTSAC	1 cut(s)	946
TspDTI	ATGAA	7 cut(s)	120, 244, 279, 402, 555, 588, 1197
TspGWI	ACGGA	1 cut(s)	1030
TspRI	CASTG	5 cut(s)	132, 463, 472, 654, 951
VspI	ATTAAT	1 cut(s)	1245
XapI	RAATTY	2 cut(s)	251, 308
XceI	RCATGY	1 cut(s)	1104
XmnI	GAANNNNTTC	2 cut(s)	121, 984
XspI	CTAG	2 cut(s)	375, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.