Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004583

Physical Location & Seq

Genomic Coordinates Forward (+)

23220378 .. 23231573

Gene Structure 11196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1171100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3867 bp

ATGGACCCATCAAATTTAGGCGATACATCGTCGAATTCGATGGAGTTAAACTCCAATTTTAGCTTCAATACGCCGCCCGGTTCTCGGCAGGGGTCGGGTCTTTCCAGGCCGAGGCTTGTGAAGGTGAGGAGGGGCACGGCCTCCCAGGTTCTGAAGCCGGCTGGCTCCCTGGAAACTGGGTTTCATCCCGGATTTAATCCGTTTCGAACGGGTTTCGAGAGTTCGAATCCAGTCTCATCCGGGCCAGAAGCTGGGACTTCAGTTTCTGGGGCATTTGGGACCCCTAAGAGTGGGAATGAGGAAAAGTTGTTTGGGGCCAATAAGATTGATCCGACTGCGAATTCGGGGAAATGGGATTCTAGTGGAGGTTTGGGGAGAGTTGTGATTGATGATATGAGGAATTTGAAAATTGGGAGCGGCAATGAGTTTTTCAATACAAAAGTGGGTGCTTTTAGTTTTAATGCAAGAAGTTCGAGTTCACCTGCGGGGTTGGATAAAGGTGGTTTTGTTTTTGGAAATGGCAATAAGCAGAATTCTAGTATTGATGAAAGCATTGTGTCAAAGCTTCCTGAGGATATGAGGAAGTTGAACATTGAAGGTCCCGAGAAGCGTGAATCTGTTGAGATAGGTAAAGATCAAAAGTTTAATTGCAGTGCAAGTGATAAGACCAAGTTTGGGTCGGGTATTAATGACAATGTGGGTGGTTCTCTGGGCCAAAATAACGAATCAGAACTACCAAATGAGTTGAAGAAGAAATTGAACATTCAAGAGACTGTGCAGCTGGATCAAAGTACTGACAGGCATAATGCCGATGATTTGAATAAGTTTGTCTTTGGAAATAGTAAAAAGGATAGTTATTTATCAGCCGGAACCCCGGAAAATGTACTTCCAGATAAGATGAAGACTCTGAACATAAAGGATACTTTTGATGGAAGAAAAGGTAATCTTCTATTGAGAAAGATGGAGAAGTTGAATATAGGCAGTAGGGCTGGAGGCTCTATGCAACCAGATCCAGGGAGATCTTCACATGAATCATTTATAAAAACCATGGAAACTGGAAATTGTAGCGACAAGTTATTTCACATGAATGAAAAGAGGGATGAGTTTTACTTTACAAGCAAGCACGATGGTATAGGCACACACTCTTTAGAATTTAAATCACCAAACCCTAAAGCAAACGTGTTTTCTGGCGTAAACAAGAAAGTGGAATTCAATGCGAAGAGGCAGTCATTCAAGGAAACAAAAATGAAAAAAACATCCGCAAAATTAAGGCGTTCTACCTCAGCCCCTCTGGGACCTGGGCATGATTTTGTTTCTAGAGAAGGCAGTTCTGAAGAAAACATTGAGGCCTCTGAATCCTATTCGCCAATGGAGGTTTCTCCATATCAAGAAACATTGGCTGATAACCAGTGTTCAAAAGAGAATTCTGCTGCATCTGGTGAATCATTTAATCTACATAACAACAATTCGGCCCCTTGTTCAGTACCTACTGTTTCAAATATTCTTATTGATGAAGATCTGGCTATGGCTACAGAACATTTGGATATAAATGAAGCTGATGCAACAACCAGAGAAGCAAAAGAGGACACTTATGAGTACCGTCACGATGGTAGTGTTGGTACTGAAGGAACTCTTGAAGGATCTATGTCCGAGGTTGAAACTGAAAGCTTTAAGTCTGCAGCTGAGGAGGTAGACTTTAATAGCGATAACTCTCATACTTCGGCAGAAACTGAAGCCAGTTCGAGCTCAAACATGGAGAGCCATGATACTGATGGAAGGCTACACTTTGGTTTCCCTTCAAGTTTGGAAAATAGAAGTGGGTCTAACTTCACCTTTGCTGCCTCTTCCGCTGCACAAAGTCAAGTATCTGCATCAAAACGCCTCCAGAAAAAGAAAAGTCTGGTAAAGGCTGGTCAAGATACCAATACTATAGTTCCAAATGTTAAGATTCCATATGCATCATCCTCTTCACAGTTTTTGCCCTATTCTGGTGCTTCAGCACTTATGTCACCTGGACATTATCAGAAAATAGAGTCATCTATCCCACAACCCAGACGTGGAGATAATACTGGAGTGCGTAAGGAACAGGAGATAAAGCAAGAATCTATTTCTTTGTCTGCTGAAGCAGCTGCAGCTCAGGAAGCATGTGAAAAGTGGCGACTAAGGGGAAACCAAGCATACTCTAATGGGGATCTGTTTAAAGCTGAGGACTGCTACACACAAGGAGTGAATTGCGTTTCTAGAAATGAGACATCTAGAAGCTGTCTTAGGGCATTGATGCTGTGCTATAGCAACCGTGCAGCAACACGTATGACTCTTGGAAGAATAAGAGATGCACTTGGGGACTGTATGATGGCTGCTGCAATTGATCCCAACTTCCTGAAAGTACAGGTTAGAGCTTCCAACTGTTATCTTGCTCTTGGGGAAGTTGAAGATGCTTCACAACATTTTAGGAGGTGCCTGCAATTAGCAAATGATGTCTGTGTGGACCGAAAGATTGCAGTAGAAGCTTCTGATGGCTTACAAAAAGCACAGAAAGTGTCTGAATGCCTGAATCTTTCTGCTGAACTTTTGCTATGGAAAACATCTACTAATGCCGAGCGTGCTTTACAACTTATTGATGAAGGTTTGGTAATAAGTCCTAGCTCAGAAAAATTATTTGAAATGAAAGCAGAGGCTCTTTTTGCGGTGCGGAGGTACGAAGAGGCGATTGAGCTGTGTGAGCAGACTCTTAGTTCTGCGGAAAAAAACAACCTTCCAGCAGATATCAATGACCAGGTCGTTTCTGTAGATAGTTCTGAACTCTCAAAGTACTTTTACTTCAGACTCTGGCGGTGCCGTATGATTTTTAAATCCTATTTTTATCTTGGAAAACTCGAGGAGGGTCTTGCTACACTAGATAAATATGAGGAAAAGATGTCTACCTCATATAGGAATTGGAGAAAAACTCTGCAATCATCAGAACCCCTTGTTCTCGTTGTACGTGAACTTCTGTCTCATAAGGTTGCAGGGAATGAAGCATTTCAGGCTGGAAGACATACTGAAGCTGTTGAGCATTATACTACTGCTTTGTCCTGCAATGTTGAATCACGTCCATTTACAGCTGTTTGTTTTTGCAATCGTGCTGCTGCATACAAAGCATTGGGCCAGATTACTGATGCTATTGCTGATTGCAGTCTAGCTATAGCTCTTGATGGAAATTATCTAAAGGCTATTTCTAGACGAGCCACATTATACGAAATGATCAGAGATTATGGAGAAGCTGCTAAAGATCTTCAGAGACTGGTATCTATTCTCACTAAGCAGGTAGAGGAAAAAACTAATCTGTGTGGAACATCTGACAGATCCATTAGCAGCACAAATGACTTGAGACAAGCTCGTCTTCGTCTTTCTGAAATAGAAGAAGAAGACAGAAAGGACATCCCCTTGGATATGTACCTTATTCTGGGAGTTGAACCCTCTGTTTCGGCATCAGAAATCAAGAAGGCCTATCGGAAAGCTGCACTTCGACATCATCCTGACAAGGCTGGTCAATTCTTTTCAAGGAGCGATAATGGTGACGATGGGCGTTGGAAGGAGATAGCGGAAGAAGTGCACAAGGATGCTGACAGGCTTTTTAAAATGATTGGGGAGGCATATGCAGTACTTTCAGACCCAACCAAGCGTGCAAGGTATGACACCGAAGAGGAGATGAGGAATGCACAAAAGAAACGCAGTGGAAGCAGCACATCTAGAATGCCAGCAGATGTTCAAAATTACCCATTTGAAAGTAGCAGTAGTAGGCGACAATGGAGAGAGGTTCCGAGATCATATGGCAACTCATCTTCTAGAGGGTCAGAAGCAACATGGTCAAGTAGATATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008047 GO:0008150 GO:0009987 GO:0030234 GO:0031072 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0051084 GO:0051085 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0061077 GO:0065007 GO:0065009 GO:0070013 GO:0080134 GO:0080135 GO:0098772 GO:1900034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

1289

Amino Acids

142.03

Weight (kDa)

6.15

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	1144 - 1226	2.1e-16	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12430
fragaria_vesca	FvH4_3g28360 FvH4_3g28360 FvH4_3g28360 FvH4_3g28360
malus_domestica	MD03G1171100.v1.1 MD03G1171300.v1.1 MD11G1188500.v1.1 MD11G1188700.v1.1
prunus_persica	Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1
pyrus_communis	pycom03g12820 pycom03g12830 pycom03g12840 pycom03g12860 pycom11g16530 pycom15g27190
rosa_chinensis	RchiOBHm_Chr5g0053371
rosa_laevigata	RLG00000034766
rosa_multiflora	Rmu_sc0001966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029100
rosa_rugosa	Rorug05G0267200 Rorug05G0267300
rosa_samantha	Rh5AG339800 Rh5BG350200 Rh5CG376600 Rh5DG364200
rosa_wichuraiana	Rw5G032070 Rw5G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1040
AarI	CACCTGC	1 cut(s)	490
AasI	GACNNNNNNGTC	1 cut(s)	3378
Acc36I	ACCTGC	2 cut(s)	490, 3295
AccB1I	GGYRCC	2 cut(s)	2457, 2835
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccBSI	CCGCTC	1 cut(s)	417
AccI	GTMKAC	2 cut(s)	1692, 2921
AclWI	GGATC	7 cut(s)	323, 792, 1004, 1648, 2199, 2363, 3339
AcsI	RAATTY	8 cut(s)	13, 34, 340, 400, 532, 1151, 1208, 1423
AflIII	ACRYGT	2 cut(s)	1179, 2306
AjiI	CACGTC	2 cut(s)	2057, 3092
AjnI	CCWGG	7 cut(s)	104, 144, 168, 1012, 1297, 2011, 2775
AjuI	GAANNNNNNNTTGG	6 cut(s)	47, 79, 294, 326, 1360, 1392
Alw21I	GWGCWC	2 cut(s)	1748, 3597
Alw26I	GTCTC	6 cut(s)	238, 764, 2243, 3000, 3274, 3364
Alw44I	GTGCAC	1 cut(s)	3593
AlwI	GGATC	7 cut(s)	323, 792, 1004, 1648, 2199, 2363, 3339
AlwNI	CAGNNNCTG	6 cut(s)	151, 251, 266, 1730, 2829, 3283
Ama87I	CYCGRG	2 cut(s)	602, 2876
AoxI	GGCC	9 cut(s)	107, 138, 242, 315, 712, 1347, 1470, 3145, 3486
ApaLI	GTGCAC	1 cut(s)	3593
ApoI	RAATTY	8 cut(s)	13, 34, 340, 400, 532, 1151, 1208, 1423
ArsI	GACNNNNNNTTYG	4 cut(s)	325, 357, 1211, 1243
AseI	ATTAAT	1 cut(s)	687
Asp700I	GAANNNNTTC	1 cut(s)	3021
AsuC2I	CCSGG	4 cut(s)	78, 189, 241, 875
AsuHPI	GGTGA	7 cut(s)	136, 471, 1152, 1451, 1822, 2001, 3569
AsuII	TTCGAA	2 cut(s)	205, 224
AvaI	CYCGRG	2 cut(s)	602, 2876
AvaII	GGWCC	5 cut(s)	4, 279, 599, 1295, 2488
AxyI	CCTNAGG	1 cut(s)	570
BaeGI	GKGCMC	2 cut(s)	137, 3597
BanI	GGYRCC	2 cut(s)	2457, 2835
BanII	GRGCYC	1 cut(s)	1748
BarI	GAAGNNNNNNTAC	4 cut(s)	2804, 2836, 2973, 3005
BbsI	GAAGAC	4 cut(s)	908, 3040, 3374, 3414
Bbv12I	GWGCWC	2 cut(s)	1748, 3597
BbvCI	CCTCAGC	3 cut(s)	1282, 1683, 2205
BceAI	ACGGC	2 cut(s)	153, 2823
BcgI	CGANNNNNNTGC	2 cut(s)	453, 487
BciT130I	CCWGG	7 cut(s)	106, 146, 170, 1014, 1299, 2013, 2777
BciVI	GTATCC	1 cut(s)	913
BclI	TGATCA	1 cut(s)	3243
BcnI	CCSGG	4 cut(s)	78, 189, 241, 875
BcoDI	GTCTC	6 cut(s)	238, 764, 2243, 3000, 3274, 3364
BfmI	CTRYAG	7 cut(s)	1530, 1677, 1929, 2130, 2287, 2787, 3183
BfuAI	ACCTGC	2 cut(s)	490, 3295
BfuI	GTATCC	1 cut(s)	913
BglII	AGATCT	3 cut(s)	1019, 1516, 3271
BmcAI	AGTACT	3 cut(s)	793, 2813, 3645
Bme18I	GGWCC	5 cut(s)	4, 279, 599, 1295, 2488
BmeT110I	CYCGRG	2 cut(s)	602, 2876
BmgBI	CACGTC	2 cut(s)	2057, 3092
BmrI	ACTGGG	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	186
BpiI	GAAGAC	4 cut(s)	908, 3040, 3374, 3414
BplI	GAGNNNNNCTC	6 cut(s)	35, 67, 2932, 2964, 3361, 3393
BpmI	CTGGAG	3 cut(s)	1011, 1868, 2091
Bpu10I	CCTNAGC	4 cut(s)	1282, 1683, 2136, 2205
Bpu14I	TTCGAA	2 cut(s)	205, 224
BpuEI	CTTGAG	1 cut(s)	3388
BpuMI	CCSGG	4 cut(s)	78, 189, 241, 875
BsaAI	YACGTR	2 cut(s)	2309, 2984
BsaBI	GATNNNNATC	1 cut(s)	1515
BsaJI	CCNNGG	9 cut(s)	110, 144, 168, 873, 1013, 1047, 1298, 1650, 3426
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	7 cut(s)	181, 230, 1060, 1408, 1737, 2074, 3288
Bse21I	CCTNAGG	1 cut(s)	570
Bse3DI	GCAATG	2 cut(s)	427, 3085
Bse8I	GATNNNNATC	1 cut(s)	1515
BseBI	CCWGG	7 cut(s)	106, 146, 170, 1014, 1299, 2013, 2777
BseDI	CCNNGG	9 cut(s)	110, 144, 168, 873, 1013, 1047, 1298, 1650, 3426
BseGI	GGATG	8 cut(s)	184, 236, 1105, 1256, 1961, 3420, 3514, 3607
BseJI	GATNNNNATC	1 cut(s)	1515
BseMI	GCAATG	2 cut(s)	427, 3085
BseMII	CTCAG	6 cut(s)	561, 1296, 1674, 2150, 2196, 2661
BseNI	ACTGG	7 cut(s)	181, 230, 1060, 1408, 1737, 2074, 3288
BseRI	GAGGAG	4 cut(s)	142, 1700, 2894, 3701
BseSI	GKGCMC	2 cut(s)	137, 3597
BseYI	CCCAGC	1 cut(s)	251
BsgI	GTGCAG	4 cut(s)	797, 1836, 2319, 3486
BshFI	GGCC	9 cut(s)	109, 140, 244, 317, 714, 1349, 1472, 3147, 3488
BshNI	GGYRCC	2 cut(s)	2457, 2835
BsiHKAI	GWGCWC	2 cut(s)	1748, 3597
BsiHKCI	CYCGRG	2 cut(s)	602, 2876
BsiSI	CCGG	6 cut(s)	78, 158, 189, 240, 867, 875
BslFI	GGGAC	5 cut(s)	268, 292, 585, 1308, 2357
BsmAI	GTCTC	6 cut(s)	238, 764, 2243, 3000, 3274, 3364
BsmFI	GGGAC	5 cut(s)	268, 292, 585, 1308, 2357
BsmI	GAATGC	3 cut(s)	2552, 3703, 3741
BsnI	GGCC	9 cut(s)	109, 140, 244, 317, 714, 1349, 1472, 3147, 3488
BsoBI	CYCGRG	2 cut(s)	602, 2876
Bsp119I	TTCGAA	2 cut(s)	205, 224
Bsp1286I	GDGCHC	3 cut(s)	137, 1748, 3597
Bsp19I	CCATGG	1 cut(s)	1047
BspANI	GGCC	9 cut(s)	109, 140, 244, 317, 714, 1349, 1472, 3147, 3488
BspCNI	CTCAG	6 cut(s)	562, 1295, 1675, 2149, 2197, 2660
BspMAI	CTGCAG	2 cut(s)	1681, 2134
BspMI	ACCTGC	2 cut(s)	490, 3295
BspPI	GGATC	7 cut(s)	323, 792, 1004, 1648, 2199, 2363, 3339
BspT104I	TTCGAA	2 cut(s)	205, 224
BspT107I	GGYRCC	2 cut(s)	2457, 2835
BsrBI	CCGCTC	1 cut(s)	417
BsrDI	GCAATG	2 cut(s)	427, 3085
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	7 cut(s)	181, 230, 1060, 1408, 1737, 2074, 3288
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	9 cut(s)	110, 144, 168, 873, 1013, 1047, 1298, 1650, 3426
BssT1I	CCWWGG	2 cut(s)	1047, 3426
Bst2UI	CCWGG	7 cut(s)	106, 146, 170, 1014, 1299, 2013, 2777
Bst4CI	ACNGT	7 cut(s)	775, 1492, 1601, 1974, 2297, 2348, 2408
Bst6I	CTCTTC	5 cut(s)	1214, 1849, 1972, 2697, 3678
BstBAI	YACGTR	2 cut(s)	2309, 2984
BstBI	TTCGAA	2 cut(s)	205, 224
BstC8I	GCNNGC	7 cut(s)	159, 163, 1121, 2462, 2604, 3666, 3741
BstDSI	CCRYGG	1 cut(s)	1047
BstENI	CCTNNNNNAGG	1 cut(s)	2929
BstF5I	GGATG	8 cut(s)	184, 236, 1105, 1256, 1961, 3420, 3514, 3607
BstMAI	GTCTC	6 cut(s)	238, 764, 2243, 3000, 3274, 3364
BstNI	CCWGG	7 cut(s)	106, 146, 170, 1014, 1299, 2013, 2777
BstNSI	RCATGY	1 cut(s)	2148
BstSFI	CTRYAG	7 cut(s)	1530, 1677, 1929, 2130, 2287, 2787, 3183
BstSLI	GKGCMC	2 cut(s)	137, 3597
BstV2I	GAAGAC	4 cut(s)	908, 3040, 3374, 3414
BstX2I	RGATCY	7 cut(s)	1009, 1019, 1516, 1640, 2191, 3271, 3344
BstYI	RGATCY	7 cut(s)	1009, 1019, 1516, 1640, 2191, 3271, 3344
Bsu36I	CCTNAGG	1 cut(s)	570
BsuI	GTATCC	1 cut(s)	913
BsuRI	GGCC	9 cut(s)	109, 140, 244, 317, 714, 1349, 1472, 3147, 3488
BtgI	CCRYGG	1 cut(s)	1047
BtrI	CACGTC	2 cut(s)	2057, 3092
BtsCI	GGATG	8 cut(s)	184, 236, 1105, 1256, 1961, 3420, 3514, 3607
BtsI	GCAGTG	2 cut(s)	658, 3721
BtsIMutI	CAGTG	3 cut(s)	658, 1415, 3721
BveI	ACCTGC	2 cut(s)	490, 3295
Cac8I	GCNNGC	7 cut(s)	159, 163, 1121, 2462, 2604, 3666, 3741
CaiI	CAGNNNCTG	6 cut(s)	151, 251, 266, 1730, 2829, 3283
Cfr10I	RCCGGY	1 cut(s)	157
CsiI	ACCWGGT	1 cut(s)	2775
CspCI	CAANNNNNGTGG	2 cut(s)	682, 717
CviAII	CATG	8 cut(s)	1028, 1048, 1084, 1304, 1753, 1763, 2145, 3846
DraI	TTTAAA	4 cut(s)	1156, 2200, 2851, 3619
DrdI	GACNNNNNNGTC	1 cut(s)	3378
DseDI	GACNNNNNNGTC	1 cut(s)	3378
Eam1104I	CTCTTC	5 cut(s)	1214, 1849, 1972, 2697, 3678
EarI	CTCTTC	5 cut(s)	1214, 1849, 1972, 2697, 3678
Ecl136II	GAGCTC	1 cut(s)	1746
Eco130I	CCWWGG	2 cut(s)	1047, 3426
Eco147I	AGGCCT	2 cut(s)	1349, 3488
Eco24I	GRGCYC	1 cut(s)	1748
Eco32I	GATATC	1 cut(s)	2767
Eco47I	GGWCC	5 cut(s)	4, 279, 599, 1295, 2488
Eco53kI	GAGCTC	1 cut(s)	1746
Eco81I	CCTNAGG	1 cut(s)	570
Eco88I	CYCGRG	2 cut(s)	602, 2876
EcoICRI	GAGCTC	1 cut(s)	1746
EcoNI	CCTNNNNNAGG	1 cut(s)	2929
EcoO109I	RGGNCCY	3 cut(s)	279, 599, 1295
EcoRI	GAATTC	5 cut(s)	34, 340, 532, 1208, 1423
EcoRII	CCWGG	7 cut(s)	104, 144, 168, 1012, 1297, 2011, 2775
EcoRV	GATATC	1 cut(s)	2767
EcoT14I	CCWWGG	2 cut(s)	1047, 3426
EcoT22I	ATGCAT	1 cut(s)	1960
EcoT38I	GRGCYC	1 cut(s)	1748
ErhI	CCWWGG	2 cut(s)	1047, 3426
FaeI	CATG	8 cut(s)	1031, 1051, 1087, 1307, 1756, 1766, 2148, 3849
FaqI	GGGAC	5 cut(s)	268, 292, 585, 1308, 2357
FatI	CATG	8 cut(s)	1027, 1047, 1083, 1303, 1752, 1762, 2144, 3845
FauI	CCCGC	1 cut(s)	478
FauNDI	CATATG	3 cut(s)	1954, 3637, 3811
FbaI	TGATCA	1 cut(s)	3243
FblI	GTMKAC	2 cut(s)	1692, 2921
FokI	GGATG	8 cut(s)	171, 223, 1112, 1243, 1948, 3407, 3501, 3614
FriOI	GRGCYC	1 cut(s)	1748
GsaI	CCCAGC	1 cut(s)	255
GsuI	CTGGAG	3 cut(s)	1011, 1868, 2091
HaeIII	GGCC	9 cut(s)	109, 140, 244, 317, 714, 1349, 1472, 3147, 3488
HapII	CCGG	6 cut(s)	78, 158, 189, 240, 867, 875
Hin1II	CATG	8 cut(s)	1031, 1051, 1087, 1307, 1756, 1766, 2148, 3849
HindIII	AAGCTT	3 cut(s)	563, 1666, 2508
HpaII	CCGG	6 cut(s)	78, 158, 189, 240, 867, 875
HphI	GGTGA	7 cut(s)	136, 471, 1152, 1451, 1822, 2001, 3569
Hpy166II	GTNNAC	7 cut(s)	479, 1195, 1693, 2488, 2922, 2987, 3595
Hpy8I	GTNNAC	7 cut(s)	479, 1195, 1693, 2488, 2922, 2987, 3595
Hpy99I	CGWCG	1 cut(s)	34
HpyCH4III	ACNGT	7 cut(s)	775, 1492, 1601, 1974, 2297, 2348, 2408
HpyCH4IV	ACGT	5 cut(s)	1179, 2056, 2308, 2983, 3091
HpySE526I	ACGT	5 cut(s)	1179, 2056, 2308, 2983, 3091
Hsp92II	CATG	8 cut(s)	1031, 1051, 1087, 1307, 1756, 1766, 2148, 3849
KflI	GGGWCCC	1 cut(s)	279
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	3243
LmnI	GCTCC	3 cut(s)	170, 414, 3546
MabI	ACCWGGT	1 cut(s)	2775
MaeII	ACGT	5 cut(s)	1179, 2056, 2308, 2983, 3091
MaeIII	GTNAC	3 cut(s)	1601, 2007, 3557
MbiI	CCGCTC	1 cut(s)	417
MfeI	CAATTG	1 cut(s)	2364
MflI	RGATCY	7 cut(s)	1009, 1019, 1516, 1640, 2191, 3271, 3344
MhlI	GDGCHC	3 cut(s)	137, 1748, 3597
MlyI	GAGTC	5 cut(s)	898, 2042, 2308, 2722, 2820
MmeI	TCCRAC	4 cut(s)	356, 471, 2427, 3551
Mph1103I	ATGCAT	1 cut(s)	1960
MroNI	GCCGGC	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	3021
MslI	CAYNNNNRTG	2 cut(s)	1086, 3600
MspA1I	CMGCKG	5 cut(s)	781, 1682, 1850, 2129, 3104
MspI	CCGG	6 cut(s)	78, 158, 189, 240, 867, 875
MunI	CAATTG	1 cut(s)	2364
Mva1269I	GAATGC	3 cut(s)	2552, 3703, 3741
MvaI	CCWGG	7 cut(s)	106, 146, 170, 1014, 1299, 2013, 2777
NaeI	GCCGGC	1 cut(s)	159
NciI	CCSGG	4 cut(s)	78, 189, 241, 875
NcoI	CCATGG	1 cut(s)	1047
NdeI	CATATG	3 cut(s)	1954, 3637, 3811
NgoMIV	GCCGGC	1 cut(s)	157
NlaIII	CATG	8 cut(s)	1031, 1051, 1087, 1307, 1756, 1766, 2148, 3849
NmeAIII	GCCGAG	3 cut(s)	64, 135, 2623
NmuCI	GTSAC	3 cut(s)	1601, 2007, 3557
NsiI	ATGCAT	1 cut(s)	1960
NspI	RCATGY	1 cut(s)	2148
NspV	TTCGAA	2 cut(s)	205, 224
PaeR7I	CTCGAG	1 cut(s)	2876
PaqCI	CACCTGC	1 cut(s)	490
PceI	AGGCCT	2 cut(s)	1349, 3488
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	3 cut(s)	2552, 3703, 3741
PdiI	GCCGGC	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	3021
PflFI	GACNNNGTC	1 cut(s)	2777
PflMI	CCANNNNNTGG	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	187
PleI	GAGTC	5 cut(s)	898, 2041, 2308, 2722, 2820
PpsI	GAGTC	5 cut(s)	898, 2041, 2308, 2722, 2820
Ppu21I	YACGTR	2 cut(s)	2309, 2984
PpuMI	RGGWCCY	3 cut(s)	279, 599, 1295
PshBI	ATTAAT	1 cut(s)	687
PsiI	TTATAA	1 cut(s)	1040
Psp124BI	GAGCTC	1 cut(s)	1748
Psp5II	RGGWCCY	3 cut(s)	279, 599, 1295
Psp6I	CCWGG	7 cut(s)	104, 144, 168, 1012, 1297, 2011, 2775
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	7 cut(s)	104, 144, 168, 1012, 1297, 2011, 2775
PspPPI	RGGWCCY	3 cut(s)	279, 599, 1295
PspXI	VCTCGAGB	1 cut(s)	2876
PstI	CTGCAG	2 cut(s)	1681, 2134
PstNI	CAGNNNCTG	6 cut(s)	151, 251, 266, 1730, 2829, 3283
PsuI	RGATCY	7 cut(s)	1009, 1019, 1516, 1640, 2191, 3271, 3344
PsyI	GACNNNGTC	1 cut(s)	2777
PvuII	CAGCTG	4 cut(s)	781, 1682, 2129, 3104
RseI	CAYNNNNRTG	2 cut(s)	1086, 3600
SacI	GAGCTC	1 cut(s)	1748
ScaI	AGTACT	3 cut(s)	793, 2813, 3645
SchI	GAGTC	5 cut(s)	898, 2042, 2308, 2722, 2820
SduI	GDGCHC	3 cut(s)	137, 1748, 3597
SexAI	ACCWGGT	1 cut(s)	2775
SfcI	CTRYAG	7 cut(s)	1530, 1677, 1929, 2130, 2287, 2787, 3183
Sfr274I	CTCGAG	1 cut(s)	2876
SfuI	TTCGAA	2 cut(s)	205, 224
SinI	GGWCC	5 cut(s)	4, 279, 599, 1295, 2488
SlaI	CTCGAG	1 cut(s)	2876
SmiI	ATTTAAAT	1 cut(s)	1156
SmiMI	CAYNNNNRTG	2 cut(s)	1086, 3600
SmlI	CTYRAG	2 cut(s)	2876, 3367
SmoI	CTYRAG	2 cut(s)	2876, 3367
SseBI	AGGCCT	2 cut(s)	1349, 3488
SspI	AATATT	1 cut(s)	1501
SstI	GAGCTC	1 cut(s)	1748
StuI	AGGCCT	2 cut(s)	1349, 3488
StyI	CCWWGG	2 cut(s)	1047, 3426
SwaI	ATTTAAAT	1 cut(s)	1156
TaaI	ACNGT	7 cut(s)	775, 1492, 1601, 1974, 2297, 2348, 2408
TaiI	ACGT	5 cut(s)	1182, 2059, 2311, 2986, 3094
TaqI	TCGA	9 cut(s)	32, 38, 205, 216, 224, 473, 1742, 2877, 3508
TaqII	GACCGA	1 cut(s)	2505
TatI	WGTACW	5 cut(s)	791, 883, 2386, 2811, 3643
TauI	GCSGC	2 cut(s)	76, 420
TscAI	CASTG	3 cut(s)	658, 1415, 3721
TseFI	GTSAC	3 cut(s)	1601, 2007, 3557
Tsp45I	GTSAC	3 cut(s)	1601, 2007, 3557
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	3 cut(s)	658, 1415, 3721
Tth111I	GACNNNGTC	1 cut(s)	2777
Van91I	CCANNNNNTGG	1 cut(s)	251
VneI	GTGCAC	1 cut(s)	3593
VpaK11BI	GGWCC	5 cut(s)	4, 279, 599, 1295, 2488
VspI	ATTAAT	1 cut(s)	687
XagI	CCTNNNNNAGG	1 cut(s)	2929
XapI	RAATTY	8 cut(s)	13, 34, 340, 400, 532, 1151, 1208, 1423
XbaI	TCTAGA	6 cut(s)	1316, 2240, 2255, 3218, 3731, 3827
XceI	RCATGY	1 cut(s)	2148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1769
XhoI	CTCGAG	1 cut(s)	2876
XmiI	GTMKAC	2 cut(s)	1692, 2921
XmnI	GAANNNNTTC	1 cut(s)	3021
ZrmI	AGTACT	3 cut(s)	793, 2813, 3645
Zsp2I	ATGCAT	1 cut(s)	1960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.