Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004583

Physical Location & Seq

Genomic Coordinates Forward (+)

54556664 .. 54566403

Gene Structure 9740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG364200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3654 bp

ATGTCGCCGGCGTTGCTAGAGTCCCGAGCTCCGGCGCACCACCCTAATCTGAACACCGGTCAGATTTCTCACCCTCCTTTCTCCTTGTTCAACTTTTCTGAATATAAATTTGAGATGAACCCATCGAATGCTAGTGATGTGTCCTCTGGATTTGGGAACTCTAGTCACGATTTTAGCTTCAATTCGTCGTCCCCTTCGCGCCAAGGCTCGGGTCTTGCGAGGCCGAGGCTTTTGAAGGTCAGAAAAGGCCTCATCAATCCGCAGTTATCGAGACCCTCAGCCGAAACCGGGGCTCCTCCTCCGGGATTTAATCCCTTTGGGAATTCCGTTTCTGGGGAATTCAGGAGTGATTCGGATTCGAATTTGAATCCGGGGATAGGAGTGGCTGACCAAATGAGCAATTTGAAAATAATTGGGAGTGGCAGTGAGTTTGGGGATGCCAAAGATGCTGCTGGTTTTCATTTTGATACTAGGTTGAGTTCGAGTTCGACTTCAGCTGGCAGGTTGGATGGAGGTGGTTTTGTATTTGGAAGTGAGTTTTTCAAGAGTTCTGGTTTTGATGACGGCATTGCGTCCAAGCTTCCTGAGGATATGAGGAAGTTGAATATTGAGGGCCCTGGGAATGGTGGAGCTGTTGAGAAAGGTGAGGATCGGAGGTTTCATGGAAGTGCAAATACCTTAACCGGGTTCGGGCTGGGGAGTAATGACAATGTGGGTGGTTCATTGGGTAGAAACGTGGGATCGGAACTCCCCCACGAGTTGGAGAAGAAGTTGAACATTAACGAGAATGTGCAGATGGGCGGCAGGACTGACACGCATAATGCCGATGGTGTGAATAAGTTTGTGTTTAATACTAGTAAGAAGGATGACTATTCCTCTGCTGGAAGCTCGGTGAATGCACTTCCAGACAAGATGAAGAATCTGAACATAGGTCTTAGTTTTGATGGAAGAAAAGAGAGTCTTCTGTTGAGAAAGATGGAGACTTTGGATATAGGAACTAAGGCTGGACTCTCTACTCAATCAGATACAGGGACATCTTCCCGCCAAACATCTGTGAAGAACATGGAAACTGAGAGGGAGGATGAATTTAATTTTACAAGCAAACAAGATCATTTGAGCACATCTTCCGTAGAGTTTAAAACACCAAACACTAAAGCCAACTTGTTTTCGGGCATAAACAAGAAATTGGAATTCAATGCAAAGCGGGAACCAGCAAGGGCTAGGCCCGCTAGGGATACAAGAATGAAAAAAGCAAGTGGAAAATTAAGACGTCCTACTTCATCCCAGCTGGGGCTTGGGCATGATGTTGTTTCAAAAGGTGGTTCTCCAGTAAACGTTGAGGCTTTTGAATCCTATTCGCCAATGGACATTTCTCCTTATCAAGAAACATTGGCTGATCACCAATATTCGAAAGAAAATTCTGCATCTTCTGAGTCATTTAGTCTCGTCAACGATTATCTGGAAACCGATTCATTTCCAAAAGTTACAAATAATTCTATTGATGAAGATCTTGCTATGGCAACAGAATGTCTGGATATAAATAAAGTTGATGCAGTGAGCAGACCTCCACAAGAGGAAGCTTTTGAGTACCATTTAGGTGGAAGTGTTAATGCTGATGAACCTGTTGAAGGATCTGTTTCTGGGGCTGAAACCGAAAGCTTTAAGTCTGCAACTGACGAGGTAGACTATATCAGTGACACTGCTAATTCAGCGGAGACTGAAGTTAGTTCAAGCCCAAATATGGAGAGACATGATACTGATGGCAGGATACACTTTGGCTTTCATGCAAGTTCATCGAATAGAAGTGGATTAAGCTTCACGTTTGCTGCCTCTACTGCTGCTCAATGTCCATTATCACCATCAAAACGCTTGCACAAAAAGAAAAATATTGTAAAGGCTGGTCAAGATGCCAATAGTTTTGTTCCAAATGCTAAGGTTCCATATGGATCATCCTCTGCAGAGTTTTTGCCATATTCTGGAGCTCCAGTACGTTCGACTCCAGGACACTATCAGGAAATAAACCCTCCAATTTCAGTTATTTCACAACGCAATGAAGATAACTCTGGGGTGCAGAAGGAACAGGAGATCAAACAAGAGGCTGTCTCTTTGTCTGCTGAAACAGCTGCAGCTCAGGAAGCATGTGAGAAGTGGCGACTAAGGGGTAACCAAGCATATTCTAATGGGGATCTATCTAAAGCCGAGGACTGCTATACCCAAGGGGTAAATGGTGTTTCTGAAAATGAGACATCTACAAGTTGTCTCAGGGCACTGATGCTGTGCTATAGCAACCGTGCAGCAACACGCATGGCTCTTGGAAGAATTCGAGATGCACTTGGAGATTGTATGATGGCTGCTGCAATAGATCCTAACTTCCTCAAAGTACAAGTTAGAGCTGCCAACTGTTATCTTACCCTTGGGGAGGTTCAAGATGCTTCACAACATTTTAGGAGGTGCCTCCAATTGGCAAGTGATGTCTGTGTCGACCAAAAGATTGTAGTAGAAGCCTCTGATGGGTTGCAAAAGGCGCAGAAAGTTTCTGAATGTCTGAATCTCTGTGCTGAGCTTGTGCAAAGGAAGACATCTACCAATGCAGAGAGTGCTTTGGAACTTATTGCTGAGGCTTTGGCAATTAGCCCTAGCTCAGAAAAATTATTTGAAATGAAAGCAGAGGCTCTTTTCACGATGCGGAGGTATGATGAGGTGATTGAGCTTTGTGAGAAGACCCTTGGTTATGCTGAAAAGAACTCCCCTTTAGTAGATACCGCCATTTCTTTAGATGGATCTGAACTCTCAAAGTACTTGCACTTCAGACTTTGGCGGTGTCGTTTGACTTTTAAATCCTATTTCCATCTAGGAAAACTTGAGGAGGGCCTTGCTTCACTAGAGAAACAAGAGGAAAAGGTTTCTACCACGTATAGGAATTGGAGAAAAACTCTGGAATCATCTATTCCCCTTGTTTGCATTGTTCGTGAGCTGTTATCTTATAAGGTTGCAGGGAATGAAGCATTTCAGGCTGGGAGGCATACTGAAGCTGTTGAACGTTATACTACTGCTTTGTCATGTAATGCGGAATCTCGTCCTTTTGCAGCTGTTTGTTTTTGCAATCGTGCTGCTGCATACAAAGCGCTGGGTCAGATTACTGATGCTATTGCAGATTGCAGCCTAGCTATAGCTCTTGATGGAAGTTATCTAAAGGCTATTTCTAGGCGAGCTACATTATATGAGATGATCAGAGATTATGGACAAGCAGCTAAAGATCTTCATAGACTTGTATCTCTTCTCACTAAGCAGTTAGAGGAAAATATCAATCAATGTGGAACCTCTGATATATCCAATAGCTGCAAAAGTGATTTGAAACAAGTTCGTCTTCGTCTTTCAGAAATAGAAGAAGAAGCCAGAAAGGACATCCCCTTGGATATGTACATTATTCTTGGAATCAAACCATCTATTTCAGCATCAGAAATTAAGAAGGCCTATCGGAAAGCTGCGCTCAGACATCATCCTGACAAGGCTGTACAATTCTTTGCTAGGAGTGAAACTGGTGATGATGGACTTTGGAAGGAGATAGCAGAAGAAGCGCACAAGGATGCTGACAGGCTTTTCAAAATTATTGGGGAGGCATATGCAGTACTTTCAGACTCTACCAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008047 GO:0008150 GO:0009987 GO:0030234 GO:0031072 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0051084 GO:0051085 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0061077 GO:0065007 GO:0065009 GO:0070013 GO:0080134 GO:0080135 GO:0098772 GO:1900034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

1217

Amino Acids

132.69

Weight (kDa)

5.77

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	1139 - 1216	3.9e-12	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12430
fragaria_vesca	FvH4_3g28360 FvH4_3g28360 FvH4_3g28360 FvH4_3g28360
malus_domestica	MD03G1171100.v1.1 MD03G1171300.v1.1 MD11G1188500.v1.1 MD11G1188700.v1.1
prunus_persica	Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1
pyrus_communis	pycom03g12820 pycom03g12830 pycom03g12840 pycom03g12860 pycom11g16530 pycom15g27190
rosa_chinensis	RchiOBHm_Chr5g0053371
rosa_laevigata	RLG00000034766
rosa_multiflora	Rmu_sc0001966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029100
rosa_rugosa	Rorug05G0267200 Rorug05G0267300
rosa_samantha	Rh5AG339800 Rh5BG350200 Rh5CG376600 Rh5DG364200
rosa_wichuraiana	Rw5G032070 Rw5G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2985
AatII	GACGTC	1 cut(s)	1273
Acc36I	ACCTGC	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	2451
AccB7I	CCANNNNNTGG	2 cut(s)	760, 1976
AccI	GTMKAC	2 cut(s)	1683, 2481
AccII	CGCG	1 cut(s)	199
AclI	AACGTT	2 cut(s)	1335, 3040
AclWI	GGATC	7 cut(s)	657, 748, 1639, 1954, 2193, 2357, 2788
AcsI	RAATTY	8 cut(s)	107, 322, 338, 361, 1085, 1190, 1417, 2319
AcuI	CTGAAG	4 cut(s)	477, 1740, 2791, 3048
AcyI	GRCGYC	1 cut(s)	1270
AfaI	GTAC	7 cut(s)	1589, 1989, 2382, 2798, 3422, 3516, 3630
AfeI	AGCGCT	1 cut(s)	3126
AgeI	ACCGGT	1 cut(s)	56
AhlI	ACTAGT	1 cut(s)	854
AjnI	CCWGG	2 cut(s)	616, 1999
AjuI	GAANNNNNNNTTGG	2 cut(s)	1354, 1386
Alw21I	GWGCWC	3 cut(s)	31, 1121, 1984
Alw26I	GTCTC	8 cut(s)	265, 974, 1448, 1709, 1741, 2107, 2237, 2264
AlwI	GGATC	7 cut(s)	657, 748, 1639, 1954, 2193, 2357, 2788
Ama87I	CYCGRG	2 cut(s)	24, 208
Aor51HI	AGCGCT	1 cut(s)	3126
AoxI	GGCC	6 cut(s)	221, 247, 613, 1223, 2869, 3471
ApaI	GGGCCC	1 cut(s)	617
ApoI	RAATTY	8 cut(s)	107, 322, 338, 361, 1085, 1190, 1417, 2319
AsiGI	ACCGGT	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	3006
AspLEI	GCGC	6 cut(s)	37, 201, 2527, 3127, 3490, 3580
AspS9I	GGNCC	4 cut(s)	613, 614, 1224, 2869
AsuC2I	CCSGG	4 cut(s)	289, 303, 372, 685
AsuHPI	GGTGA	7 cut(s)	62, 656, 904, 1391, 1848, 2713, 3554
AsuII	TTCGAA	2 cut(s)	359, 1409
AvaI	CYCGRG	2 cut(s)	24, 208
AxyI	CCTNAGG	1 cut(s)	585
BaeGI	GKGCMC	2 cut(s)	617, 2269
BanI	GGYRCC	1 cut(s)	2451
BanII	GRGCYC	4 cut(s)	31, 295, 617, 1984
BarI	GAAGNNNNNNTAC	4 cut(s)	658, 690, 2789, 2821
BauI	CACGAG	1 cut(s)	755
BbsI	GAAGAC	4 cut(s)	953, 2582, 2726, 3359
Bbv12I	GWGCWC	3 cut(s)	31, 1121, 1984
BbvCI	CCTCAGC	2 cut(s)	277, 2616
BceAI	ACGGC	1 cut(s)	580
BcgI	CGANNNNNNTGC	2 cut(s)	1776, 1810
BciT130I	CCWGG	2 cut(s)	618, 2001
BciVI	GTATCC	2 cut(s)	1228, 1761
BclI	TGATCA	2 cut(s)	1396, 3228
BcnI	CCSGG	4 cut(s)	289, 303, 372, 685
BcoDI	GTCTC	8 cut(s)	265, 974, 1448, 1709, 1741, 2107, 2237, 2264
BcuI	ACTAGT	1 cut(s)	854
BfmI	CTRYAG	4 cut(s)	1956, 2124, 2281, 3168
BfoI	RGCGCY	1 cut(s)	3128
BfuAI	ACCTGC	1 cut(s)	492
BfuI	GTATCC	2 cut(s)	1228, 1761
BglII	AGATCT	2 cut(s)	1507, 3256
BlpI	GCTNAGC	1 cut(s)	2559
BmcAI	AGTACT	2 cut(s)	2798, 3630
Bme1390I	CCNGG	6 cut(s)	289, 303, 372, 618, 685, 2001
BmeT110I	CYCGRG	2 cut(s)	24, 208
BmgT120I	GGNCC	4 cut(s)	613, 614, 1224, 2869
BmiI	GGNNCC	6 cut(s)	294, 615, 1209, 1938, 2453, 3319
BmrFI	CCNGG	6 cut(s)	289, 303, 372, 618, 685, 2001
BpiI	GAAGAC	4 cut(s)	953, 2582, 2726, 3359
BplI	GAGNNNNNCTC	6 cut(s)	1549, 1581, 2087, 2119, 2917, 2949
BpmI	CTGGAG	4 cut(s)	1311, 1968, 1983, 1998
Bpu10I	CCTNAGC	4 cut(s)	277, 1932, 2130, 2616
Bpu1102I	GCTNAGC	1 cut(s)	2559
Bpu14I	TTCGAA	2 cut(s)	359, 1409
BpuEI	CTTGAG	1 cut(s)	2882
BpuMI	CCSGG	4 cut(s)	289, 303, 372, 685
BsaAI	YACGTR	1 cut(s)	2913
BsaBI	GATNNNNATC	1 cut(s)	1506
BsaHI	GRCGYC	1 cut(s)	1270
BsaI	GGTCTC	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	56
BsaXI	ACNNNNNCTCC	8 cut(s)	277, 307, 409, 439, 755, 785, 1971, 2001
Bse118I	RCCGGY	2 cut(s)	7, 56
Bse1I	ACTGG	3 cut(s)	1328, 1985, 3544
Bse21I	CCTNAGG	1 cut(s)	585
Bse3DI	GCAATG	2 cut(s)	567, 2056
Bse8I	GATNNNNATC	1 cut(s)	1506
BseBI	CCWGG	2 cut(s)	618, 2001
BseGI	GGATG	9 cut(s)	442, 514, 871, 1087, 1280, 1949, 3405, 3499, 3592
BseJI	GATNNNNATC	1 cut(s)	1506
BseMI	GCAATG	2 cut(s)	567, 2056
BseNI	ACTGG	3 cut(s)	1328, 1985, 3544
BseRI	GAGGAG	3 cut(s)	285, 288, 2879
BseSI	GKGCMC	2 cut(s)	617, 2269
BseYI	CCCAGC	5 cut(s)	694, 1284, 1288, 3014, 3127
BsgI	GTGCAG	3 cut(s)	812, 2090, 2313
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	6 cut(s)	223, 249, 615, 1225, 2871, 3473
BshNI	GGYRCC	1 cut(s)	2451
BshTI	ACCGGT	1 cut(s)	56
BsiHKAI	GWGCWC	3 cut(s)	31, 1121, 1984
BsiHKCI	CYCGRG	2 cut(s)	24, 208
BsiSI	CCGG	7 cut(s)	8, 32, 57, 288, 302, 371, 684
BslFI	GGGAC	3 cut(s)	7, 175, 1045
BsmAI	GTCTC	8 cut(s)	265, 974, 1448, 1709, 1741, 2107, 2237, 2264
BsmFI	GGGAC	3 cut(s)	7, 175, 1045
BsmI	GAATGC	2 cut(s)	133, 901
BsnI	GGCC	6 cut(s)	223, 249, 615, 1225, 2871, 3473
Bso31I	GGTCTC	1 cut(s)	265
BsoBI	CYCGRG	2 cut(s)	24, 208
Bsp119I	TTCGAA	2 cut(s)	359, 1409
Bsp120I	GGGCCC	1 cut(s)	613
Bsp1286I	GDGCHC	6 cut(s)	31, 295, 617, 1121, 1984, 2269
Bsp1407I	TGTACA	2 cut(s)	3420, 3514
Bsp1720I	GCTNAGC	1 cut(s)	2559
BspANI	GGCC	6 cut(s)	223, 249, 615, 1225, 2871, 3473
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	6 cut(s)	294, 615, 1209, 1938, 2453, 3319
BspMAI	CTGCAG	2 cut(s)	1960, 2128
BspMI	ACCTGC	1 cut(s)	492
BspPI	GGATC	7 cut(s)	657, 748, 1639, 1954, 2193, 2357, 2788
BspT104I	TTCGAA	2 cut(s)	359, 1409
BspT107I	GGYRCC	1 cut(s)	2451
BspTNI	GGTCTC	1 cut(s)	265
BsrDI	GCAATG	2 cut(s)	567, 2056
BsrFI	RCCGGY	2 cut(s)	7, 56
BsrGI	TGTACA	2 cut(s)	3420, 3514
BsrI	ACTGG	3 cut(s)	1328, 1985, 3544
BssAI	RCCGGY	2 cut(s)	7, 56
BssNI	GRCGYC	1 cut(s)	1270
BssSI	CACGAG	1 cut(s)	755
BssT1I	CCWWGG	6 cut(s)	202, 2215, 2413, 2725, 3411, 3645
Bst2BI	CACGAG	1 cut(s)	755
Bst2UI	CCWGG	2 cut(s)	618, 2001
Bst4CI	ACNGT	2 cut(s)	2291, 2402
Bst6I	CTCTTC	1 cut(s)	3282
BstACI	GRCGYC	1 cut(s)	1270
BstAPI	GCANNNNNTGC	1 cut(s)	2597
BstAUI	TGTACA	2 cut(s)	3420, 3514
BstBAI	YACGTR	1 cut(s)	2913
BstBI	TTCGAA	2 cut(s)	359, 1409
BstC8I	GCNNGC	5 cut(s)	9, 499, 1227, 1871, 3210
BstEII	GGTNACC	1 cut(s)	2162
BstENI	CCTNNNNNAGG	2 cut(s)	1626, 2417
BstF5I	GGATG	9 cut(s)	442, 514, 871, 1087, 1280, 1949, 3405, 3499, 3592
BstFNI	CGCG	1 cut(s)	199
BstH2I	RGCGCY	1 cut(s)	3128
BstHHI	GCGC	6 cut(s)	37, 201, 2527, 3127, 3490, 3580
BstMAI	GTCTC	8 cut(s)	265, 974, 1448, 1709, 1741, 2107, 2237, 2264
BstNI	CCWGG	2 cut(s)	618, 2001
BstNSI	RCATGY	1 cut(s)	2142
BstPI	GGTNACC	1 cut(s)	2162
BstSCI	CCNGG	6 cut(s)	287, 301, 370, 616, 683, 1999
BstSFI	CTRYAG	4 cut(s)	1956, 2124, 2281, 3168
BstSLI	GKGCMC	2 cut(s)	617, 2269
BstUI	CGCG	1 cut(s)	199
BstV2I	GAAGAC	4 cut(s)	953, 2582, 2726, 3359
BstX2I	RGATCY	6 cut(s)	1507, 1631, 2185, 2362, 2780, 3256
BstXI	CCANNNNNNTGG	1 cut(s)	1598
BstYI	RGATCY	6 cut(s)	1507, 1631, 2185, 2362, 2780, 3256
Bsu36I	CCTNAGG	1 cut(s)	585
BsuI	GTATCC	2 cut(s)	1228, 1761
BsuRI	GGCC	6 cut(s)	223, 249, 615, 1225, 2871, 3473
BtsCI	GGATG	9 cut(s)	442, 514, 871, 1087, 1280, 1949, 3405, 3499, 3592
BtsI	GCAGTG	3 cut(s)	430, 1560, 1698
BtsIMutI	CAGTG	5 cut(s)	430, 1560, 1698, 1699, 2267
BveI	ACCTGC	1 cut(s)	492
Cac8I	GCNNGC	5 cut(s)	9, 499, 1227, 1871, 3210
CfoI	GCGC	6 cut(s)	37, 201, 2527, 3127, 3490, 3580
Cfr10I	RCCGGY	2 cut(s)	7, 56
Cfr13I	GGNCC	4 cut(s)	613, 614, 1224, 2869
CseI	GACGC	1 cut(s)	561
Csp6I	GTAC	7 cut(s)	1588, 1988, 2381, 2797, 3421, 3515, 3629
CspAI	ACCGGT	1 cut(s)	56
CspCI	CAANNNNNGTGG	4 cut(s)	697, 732, 3295, 3330
CviAII	CATG	8 cut(s)	662, 1063, 1301, 1751, 1784, 2139, 2305, 3060
CviQI	GTAC	7 cut(s)	1588, 1988, 2381, 2797, 3421, 3515, 3629
DraI	TTTAAA	2 cut(s)	1138, 2836
Eam1104I	CTCTTC	1 cut(s)	3282
EarI	CTCTTC	1 cut(s)	3282
Ecl136II	GAGCTC	2 cut(s)	29, 1982
Eco130I	CCWWGG	6 cut(s)	202, 2215, 2413, 2725, 3411, 3645
Eco147I	AGGCCT	2 cut(s)	249, 3473
Eco24I	GRGCYC	4 cut(s)	31, 295, 617, 1984
Eco31I	GGTCTC	1 cut(s)	265
Eco47III	AGCGCT	1 cut(s)	3126
Eco53kI	GAGCTC	2 cut(s)	29, 1982
Eco57I	CTGAAG	4 cut(s)	477, 1740, 2791, 3048
Eco81I	CCTNAGG	1 cut(s)	585
Eco88I	CYCGRG	2 cut(s)	24, 208
Eco91I	GGTNACC	1 cut(s)	2162
EcoICRI	GAGCTC	2 cut(s)	29, 1982
EcoNI	CCTNNNNNAGG	2 cut(s)	1626, 2417
EcoO109I	RGGNCCY	3 cut(s)	613, 614, 2869
EcoO65I	GGTNACC	1 cut(s)	2162
EcoRI	GAATTC	4 cut(s)	322, 338, 1190, 2319
EcoRII	CCWGG	2 cut(s)	616, 1999
EcoT14I	CCWWGG	6 cut(s)	202, 2215, 2413, 2725, 3411, 3645
EcoT38I	GRGCYC	4 cut(s)	31, 295, 617, 1984
ErhI	CCWWGG	6 cut(s)	202, 2215, 2413, 2725, 3411, 3645
FaeI	CATG	8 cut(s)	665, 1066, 1304, 1754, 1787, 2142, 2308, 3063
FalI	AAGNNNNNCTT	4 cut(s)	945, 977, 3351, 3383
FaqI	GGGAC	3 cut(s)	7, 175, 1045
FatI	CATG	8 cut(s)	661, 1062, 1300, 1750, 1783, 2138, 2304, 3059
FauI	CCCGC	3 cut(s)	1049, 1197, 1234
FauNDI	CATATG	2 cut(s)	1942, 3622
FbaI	TGATCA	2 cut(s)	1396, 3228
FblI	GTMKAC	2 cut(s)	1683, 2481
FokI	GGATG	9 cut(s)	449, 521, 878, 1094, 1267, 1936, 3392, 3486, 3599
FriOI	GRGCYC	4 cut(s)	31, 295, 617, 1984
GlaI	GCGC	6 cut(s)	36, 200, 2526, 3126, 3489, 3579
GsaI	CCCAGC	5 cut(s)	698, 1288, 1292, 3018, 3131
GsuI	CTGGAG	4 cut(s)	1311, 1968, 1983, 1998
HaeII	RGCGCY	1 cut(s)	3128
HaeIII	GGCC	6 cut(s)	223, 249, 615, 1225, 2871, 3473
HapII	CCGG	7 cut(s)	8, 32, 57, 288, 302, 371, 684
HgaI	GACGC	1 cut(s)	561
HhaI	GCGC	6 cut(s)	37, 201, 2527, 3127, 3490, 3580
Hin1I	GRCGYC	1 cut(s)	1270
Hin1II	CATG	8 cut(s)	665, 1066, 1304, 1754, 1787, 2142, 2308, 3063
Hin6I	GCGC	6 cut(s)	35, 199, 2525, 3125, 3488, 3578
HinP1I	GCGC	6 cut(s)	35, 199, 2525, 3125, 3488, 3578
HincII	GTYRAC	2 cut(s)	1450, 2482
HindII	GTYRAC	2 cut(s)	1450, 2482
HindIII	AAGCTT	4 cut(s)	578, 1578, 1657, 1813
HpaII	CCGG	7 cut(s)	8, 32, 57, 288, 302, 371, 684
HphI	GGTGA	7 cut(s)	62, 656, 904, 1391, 1848, 2713, 3554
Hpy166II	GTNNAC	4 cut(s)	1333, 1450, 1684, 2482
Hpy8I	GTNNAC	4 cut(s)	1333, 1450, 1684, 2482
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	7 cut(s)	204, 229, 856, 1622, 2068, 3463, 3553
HpyCH4III	ACNGT	2 cut(s)	2291, 2402
HpyCH4IV	ACGT	7 cut(s)	735, 1270, 1335, 1820, 1990, 2912, 3040
HpySE526I	ACGT	7 cut(s)	735, 1270, 1335, 1820, 1990, 2912, 3040
Hsp92I	GRCGYC	1 cut(s)	1270
Hsp92II	CATG	8 cut(s)	665, 1066, 1304, 1754, 1787, 2142, 2308, 3063
HspAI	GCGC	6 cut(s)	35, 199, 2525, 3125, 3488, 3578
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Ksp22I	TGATCA	2 cut(s)	1396, 3228
LmnI	GCTCC	5 cut(s)	34, 298, 629, 1979, 1987
MaeII	ACGT	7 cut(s)	735, 1270, 1335, 1820, 1990, 2912, 3040
MaeIII	GTNAC	4 cut(s)	164, 1483, 1694, 2162
MfeI	CAATTG	1 cut(s)	2459
MflI	RGATCY	6 cut(s)	1507, 1631, 2185, 2362, 2780, 3256
MhlI	GDGCHC	6 cut(s)	31, 295, 617, 1121, 1984, 2269
MlyI	GAGTC	6 cut(s)	29, 967, 1002, 1442, 1990, 3632
MmeI	TCCRAC	2 cut(s)	486, 741
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MroXI	GAANNNNTTC	1 cut(s)	3006
MslI	CAYNNNNRTG	3 cut(s)	666, 1596, 3585
MspA1I	CMGCKG	5 cut(s)	497, 1288, 1712, 2123, 3089
MspI	CCGG	7 cut(s)	8, 32, 57, 288, 302, 371, 684
MspR9I	CCNGG	6 cut(s)	289, 303, 372, 618, 685, 2001
MunI	CAATTG	1 cut(s)	2459
Mva1269I	GAATGC	2 cut(s)	133, 901
MvaI	CCWGG	2 cut(s)	618, 2001
MvnI	CGCG	1 cut(s)	199
NaeI	GCCGGC	1 cut(s)	9
NciI	CCSGG	4 cut(s)	289, 303, 372, 685
NdeI	CATATG	2 cut(s)	1942, 3622
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	8 cut(s)	665, 1066, 1304, 1754, 1787, 2142, 2308, 3063
NlaIV	GGNNCC	6 cut(s)	294, 615, 1209, 1938, 2453, 3319
NmeAIII	GCCGAG	2 cut(s)	249, 2224
NmuCI	GTSAC	2 cut(s)	164, 1694
NspI	RCATGY	1 cut(s)	2142
NspV	TTCGAA	2 cut(s)	359, 1409
PasI	CCCWGGG	1 cut(s)	617
PceI	AGGCCT	2 cut(s)	249, 3473
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PctI	GAATGC	2 cut(s)	133, 901
PdiI	GCCGGC	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	3006
PflMI	CCANNNNNTGG	2 cut(s)	760, 1976
PfoI	TCCNGGA	2 cut(s)	301, 1999
PinAI	ACCGGT	1 cut(s)	56
PleI	GAGTC	6 cut(s)	28, 966, 1002, 1441, 1990, 3632
PpsI	GAGTC	6 cut(s)	28, 966, 1002, 1441, 1990, 3632
Ppu21I	YACGTR	1 cut(s)	2913
PsiI	TTATAA	1 cut(s)	2985
Psp124BI	GAGCTC	2 cut(s)	31, 1984
Psp1406I	AACGTT	2 cut(s)	1335, 3040
Psp6I	CCWGG	2 cut(s)	616, 1999
PspEI	GGTNACC	1 cut(s)	2162
PspFI	CCCAGC	5 cut(s)	694, 1284, 1288, 3014, 3127
PspGI	CCWGG	2 cut(s)	616, 1999
PspN4I	GGNNCC	6 cut(s)	294, 615, 1209, 1938, 2453, 3319
PspOMI	GGGCCC	1 cut(s)	613
PspPI	GGNCC	4 cut(s)	613, 614, 1224, 2869
PstI	CTGCAG	2 cut(s)	1960, 2128
PsuI	RGATCY	6 cut(s)	1507, 1631, 2185, 2362, 2780, 3256
PvuII	CAGCTG	4 cut(s)	497, 1288, 2123, 3089
RsaI	GTAC	7 cut(s)	1589, 1989, 2382, 2798, 3422, 3516, 3630
RsaNI	GTAC	7 cut(s)	1588, 1988, 2381, 2797, 3421, 3515, 3629
RseI	CAYNNNNRTG	3 cut(s)	666, 1596, 3585
SacI	GAGCTC	2 cut(s)	31, 1984
SalI	GTCGAC	1 cut(s)	2480
Sau96I	GGNCC	4 cut(s)	613, 614, 1224, 2869
ScaI	AGTACT	2 cut(s)	2798, 3630
SchI	GAGTC	6 cut(s)	29, 967, 1002, 1442, 1990, 3632
ScrFI	CCNGG	6 cut(s)	289, 303, 372, 618, 685, 2001
SduI	GDGCHC	6 cut(s)	31, 295, 617, 1121, 1984, 2269
SfcI	CTRYAG	4 cut(s)	1956, 2124, 2281, 3168
SfuI	TTCGAA	2 cut(s)	359, 1409
SgrAI	CRCCGGYG	1 cut(s)	7
SmiMI	CAYNNNNRTG	3 cut(s)	666, 1596, 3585
SmlI	CTYRAG	1 cut(s)	2861
SmoI	CTYRAG	1 cut(s)	2861
SpeI	ACTAGT	1 cut(s)	854
SseBI	AGGCCT	2 cut(s)	249, 3473
SspI	AATATT	3 cut(s)	607, 1406, 1888
SstI	GAGCTC	2 cut(s)	31, 1984
StuI	AGGCCT	2 cut(s)	249, 3473
StyD4I	CCNGG	6 cut(s)	287, 301, 370, 616, 683, 1999
StyI	CCWWGG	6 cut(s)	202, 2215, 2413, 2725, 3411, 3645
TaaI	ACNGT	2 cut(s)	2291, 2402
TaiI	ACGT	7 cut(s)	738, 1273, 1338, 1823, 1993, 2915, 3043
TatI	WGTACW	5 cut(s)	2380, 2796, 3420, 3514, 3628
TauI	GCSGC	1 cut(s)	804
TscAI	CASTG	5 cut(s)	430, 1560, 1699, 1705, 2274
TseFI	GTSAC	2 cut(s)	164, 1694
Tsp45I	GTSAC	2 cut(s)	164, 1694
TspGWI	ACGGA	2 cut(s)	316, 1117
TspRI	CASTG	5 cut(s)	430, 1560, 1699, 1705, 2274
Van91I	CCANNNNNTGG	2 cut(s)	760, 1976
XagI	CCTNNNNNAGG	2 cut(s)	1626, 2417
XapI	RAATTY	8 cut(s)	107, 322, 338, 361, 1085, 1190, 1417, 2319
XceI	RCATGY	1 cut(s)	2142
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1292, 2222
XmiI	GTMKAC	2 cut(s)	1683, 2481
XmnI	GAANNNNTTC	1 cut(s)	3006
ZraI	GACGTC	1 cut(s)	1271
ZrmI	AGTACT	2 cut(s)	2798, 3630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.