Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004583

Physical Location & Seq

Genomic Coordinates Forward (+)

13625301 .. 13626344

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g12820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGACCCATCAAATTTAGGCGATACATCGTCGAATTCGAAGGAGTTAAACTCCAATTTTAGCTTCAATACGCCGTCAGGTTCTCGGCAGGGGTCGGGTCTTTCCAGGCCGAGGCTTGTGAAGGTGAGGAGGGGCTCGGCCTCCCAGGTTCTGAAGCCGGCTGCCTCCTTGGAAACTGGGTTTCATCCGGGATTTAATCCGTTTCGAACGAGTTTCGAGAGTTCGAATCCAGTCTCATCCGGGCCAGAAGCTGGGACTTCAGTTTCTGGGGCATTTGGGACCCCTAAGAGTGGGAATGAGGAAAAGTTGTTTGGGGCCAATAAGATTGATCCGACTGCGAATTCGGGGAAATGGGATTCTAGTGGAGGTTTGGGGAGAGTTGTGATTGATGATATGAGGAATTTGAAAATTGGAAGCGGCAATGAGTTTTTCAATACAAAAGTGGGTGCTATTAGTTTTAATGCAAGAAGTTCGAGTTCAGCTGCGGGGTTGGATAAAGGTGGTTTTGTTTTTGGAAATGGCAATAAGAAGAATTCTAGCATTGATGAAAGCATTGTGTCAAAGCTTCCTGAGGATATGAGGAAGTTGAACATTGAAGGTCCCGAGAAGCGTGAATCTGTTGAGATAGGTAACGATCAAAAGTTTAATTTCAGTGCAAGTGATAAGACCAAGTCTGGGTCGGGTATTAATGACAATGTGGGTGGTTCTCTGGGCGAAAATGATGAATCAGAACTGCTAAATGAGTTGAAGAAGAAATTGAACATTCGAGAGACCGTGCAGCTGGATCAAAGTACTGACAGGCGTAATGCCGATGATGTCAATAAGTTTGTCTTTGGAAATAGTAAAAAGGATAGTTATTTATCAGCCGGAGCCTCAGAAAATGTACTTCCAGATAAGATGAAGACTCTGAACATAAAAGATACTTTTGATGGAAGAAAAGGTAATCTTCTATCGAGAAAGATGGAGAAGTTGGATATAGGCAGTAGGGCTGCAGACTCTACGCAACCAGATCCAGGGATCGATCTTCACATGAAACATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008047 GO:0008150 GO:0009987 GO:0030234 GO:0031072 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0051084 GO:0051085 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0061077 GO:0065007 GO:0065009 GO:0070013 GO:0080134 GO:0080135 GO:0098772 GO:1900034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

348

Amino Acids

37.12

Weight (kDa)

8.83

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12430
fragaria_vesca	FvH4_3g28360 FvH4_3g28360 FvH4_3g28360 FvH4_3g28360
malus_domestica	MD03G1171100.v1.1 MD03G1171300.v1.1 MD11G1188500.v1.1 MD11G1188700.v1.1
prunus_persica	Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1
pyrus_communis	pycom03g12820 pycom03g12830 pycom03g12840 pycom03g12860 pycom11g16530 pycom15g27190
rosa_chinensis	RchiOBHm_Chr5g0053371
rosa_laevigata	RLG00000034766
rosa_multiflora	Rmu_sc0001966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029100
rosa_rugosa	Rorug05G0267200 Rorug05G0267300
rosa_samantha	Rh5AG339800 Rh5BG350200 Rh5CG376600 Rh5DG364200
rosa_wichuraiana	Rw5G032070 Rw5G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1042
AccB7I	CCANNNNNTGG	1 cut(s)	251
AciI	CCGC	2 cut(s)	417, 485
AclWI	GGATC	4 cut(s)	323, 792, 1004, 1025
AcsI	RAATTY	5 cut(s)	13, 34, 340, 400, 532
AcuI	CTGAAG	2 cut(s)	173, 243
AfaI	GTAC	2 cut(s)	793, 885
AfiI	CCNNNNNNNGG	5 cut(s)	111, 251, 290, 675, 1013
AgsI	TTSAA	7 cut(s)	67, 406, 433, 589, 596, 748, 760
AjnI	CCWGG	3 cut(s)	104, 144, 1012
AjuI	GAANNNNNNNTTGG	4 cut(s)	47, 79, 294, 326
AluBI	AGCT	5 cut(s)	63, 251, 482, 565, 781
AluI	AGCT	5 cut(s)	63, 251, 482, 565, 781
Alw26I	GTCTC	2 cut(s)	238, 764
AlwI	GGATC	4 cut(s)	323, 792, 1004, 1025
AlwNI	CAGNNNCTG	3 cut(s)	151, 251, 266
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	4 cut(s)	107, 138, 242, 315
ApeKI	GCWGC	4 cut(s)	161, 482, 778, 989
ApoI	RAATTY	5 cut(s)	13, 34, 340, 400, 532
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
AseI	ATTAAT	1 cut(s)	687
AspS9I	GGNCC	5 cut(s)	4, 242, 279, 315, 599
AsuC2I	CCSGG	2 cut(s)	189, 241
AsuHPI	GGTGA	1 cut(s)	136
AsuII	TTCGAA	3 cut(s)	38, 205, 224
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	3 cut(s)	4, 279, 599
AxyI	CCTNAGG	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	908
BbvI	GCAGC	4 cut(s)	148, 469, 790, 976
BccI	CCATC	3 cut(s)	16, 923, 955
BceAI	ACGGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	2 cut(s)	453, 487
BciT130I	CCWGG	3 cut(s)	106, 146, 1014
BcnI	CCSGG	2 cut(s)	189, 241
BcoDI	GTCTC	2 cut(s)	238, 764
BfaI	CTAG	2 cut(s)	360, 537
BfmI	CTRYAG	1 cut(s)	990
BisI	GCNGC	5 cut(s)	162, 418, 483, 779, 990
BlsI	GCNGC	5 cut(s)	163, 419, 484, 780, 991
BmcAI	AGTACT	1 cut(s)	793
Bme1390I	CCNGG	5 cut(s)	106, 146, 189, 241, 1014
Bme18I	GGWCC	3 cut(s)	4, 279, 599
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	5 cut(s)	4, 242, 279, 315, 599
BmiI	GGNNCC	6 cut(s)	6, 280, 281, 316, 601, 871
BmrFI	CCNGG	5 cut(s)	106, 146, 189, 241, 1014
BmrI	ACTGGG	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	908
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
Bpu14I	TTCGAA	3 cut(s)	38, 205, 224
BpuMI	CCSGG	2 cut(s)	189, 241
Bsa29I	ATCGAT	1 cut(s)	1020
BsaI	GGTCTC	1 cut(s)	764
BsaJI	CCNNGG	4 cut(s)	110, 144, 168, 1013
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 251, 290, 675, 1013
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	181, 230
Bse21I	CCTNAGG	1 cut(s)	570
Bse3DI	GCAATG	1 cut(s)	427
BseBI	CCWGG	3 cut(s)	106, 146, 1014
BseCI	ATCGAT	1 cut(s)	1020
BseDI	CCNNGG	4 cut(s)	110, 144, 168, 1013
BseGI	GGATG	2 cut(s)	184, 236
BseLI	CCNNNNNNNGG	5 cut(s)	111, 251, 290, 675, 1013
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	2 cut(s)	561, 888
BseNI	ACTGG	2 cut(s)	181, 230
BseRI	GAGGAG	1 cut(s)	142
BseXI	GCAGC	4 cut(s)	148, 469, 790, 976
BseYI	CCCAGC	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	797
BshFI	GGCC	4 cut(s)	109, 140, 244, 317
BshVI	ATCGAT	1 cut(s)	1020
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	4 cut(s)	158, 188, 240, 867
BslFI	GGGAC	3 cut(s)	268, 292, 585
BslI	CCNNNNNNNGG	5 cut(s)	111, 251, 290, 675, 1013
BsmAI	GTCTC	2 cut(s)	238, 764
BsmFI	GGGAC	3 cut(s)	268, 292, 585
BsnI	GGCC	4 cut(s)	109, 140, 244, 317
Bso31I	GGTCTC	1 cut(s)	764
BsoBI	CYCGRG	1 cut(s)	602
Bsp119I	TTCGAA	3 cut(s)	38, 205, 224
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	6 cut(s)	328, 634, 784, 1009, 1017, 1021
BspACI	CCGC	2 cut(s)	417, 485
BspANI	GGCC	4 cut(s)	109, 140, 244, 317
BspCNI	CTCAG	2 cut(s)	562, 887
BspDI	ATCGAT	1 cut(s)	1020
BspLI	GGNNCC	6 cut(s)	6, 280, 281, 316, 601, 871
BspMAI	CTGCAG	1 cut(s)	994
BspPI	GGATC	4 cut(s)	323, 792, 1004, 1025
BspT104I	TTCGAA	3 cut(s)	38, 205, 224
BspTNI	GGTCTC	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	181, 230
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	4 cut(s)	110, 144, 168, 1013
BssMI	GATC	6 cut(s)	328, 634, 784, 1009, 1017, 1021
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	3 cut(s)	106, 146, 1014
Bst4CI	ACNGT	1 cut(s)	775
BstBI	TTCGAA	3 cut(s)	38, 205, 224
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	3 cut(s)	285, 570, 874
BstF5I	GGATG	2 cut(s)	184, 236
BstKTI	GATC	6 cut(s)	331, 637, 787, 1012, 1020, 1024
BstMAI	GTCTC	2 cut(s)	238, 764
BstMBI	GATC	6 cut(s)	328, 634, 784, 1009, 1017, 1021
BstNI	CCWGG	3 cut(s)	106, 146, 1014
BstSCI	CCNGG	5 cut(s)	104, 144, 187, 239, 1012
BstSFI	CTRYAG	1 cut(s)	990
BstV1I	GCAGC	4 cut(s)	148, 469, 790, 976
BstV2I	GAAGAC	1 cut(s)	908
BstX2I	RGATCY	1 cut(s)	1009
BstYI	RGATCY	1 cut(s)	1009
Bsu15I	ATCGAT	1 cut(s)	1020
Bsu36I	CCTNAGG	1 cut(s)	570
BsuRI	GGCC	4 cut(s)	109, 140, 244, 317
BsuTUI	ATCGAT	1 cut(s)	1020
BtsCI	GGATG	2 cut(s)	184, 236
BtsIMutI	CAGTG	1 cut(s)	658
Cac8I	GCNNGC	1 cut(s)	159
CaiI	CAGNNNCTG	3 cut(s)	151, 251, 266
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	5 cut(s)	4, 242, 279, 315, 599
ClaI	ATCGAT	1 cut(s)	1020
Csp6I	GTAC	2 cut(s)	792, 884
CspCI	CAANNNNNGTGG	2 cut(s)	682, 717
CviAII	CATG	1 cut(s)	1030
CviQI	GTAC	2 cut(s)	792, 884
DdeI	CTNAG	3 cut(s)	285, 570, 874
DpnI	GATC	6 cut(s)	330, 636, 786, 1011, 1019, 1023
DpnII	GATC	6 cut(s)	328, 634, 784, 1009, 1017, 1021
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	764
Eco47I	GGWCC	3 cut(s)	4, 279, 599
Eco57I	CTGAAG	2 cut(s)	173, 243
Eco81I	CCTNAGG	1 cut(s)	570
Eco88I	CYCGRG	1 cut(s)	602
EcoO109I	RGGNCCY	2 cut(s)	279, 599
EcoRI	GAATTC	3 cut(s)	34, 340, 532
EcoRII	CCWGG	3 cut(s)	104, 144, 1012
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	1 cut(s)	1033
FaiI	YATR	6 cut(s)	395, 578, 914, 977, 1031, 1042
FalI	AAGNNNNNCTT	4 cut(s)	815, 847, 930, 962
FaqI	GGGAC	3 cut(s)	268, 292, 585
FatI	CATG	1 cut(s)	1029
FauI	CCCGC	1 cut(s)	478
Fnu4HI	GCNGC	5 cut(s)	162, 418, 483, 779, 990
FokI	GGATG	2 cut(s)	171, 223
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	5 cut(s)	162, 418, 483, 779, 990
FspBI	CTAG	2 cut(s)	360, 537
GluI	GCNGC	5 cut(s)	162, 418, 483, 779, 990
GsaI	CCCAGC	1 cut(s)	255
HaeIII	GGCC	4 cut(s)	109, 140, 244, 317
HapII	CCGG	4 cut(s)	158, 188, 240, 867
Hin1II	CATG	1 cut(s)	1033
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	6 cut(s)	226, 356, 614, 725, 904, 995
HpaII	CCGG	4 cut(s)	158, 188, 240, 867
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	5 cut(s)	153, 333, 730, 877, 909
Hpy188III	TCNNGA	6 cut(s)	217, 569, 602, 767, 890, 954
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	3 cut(s)	34, 115, 590
HpyCH4III	ACNGT	1 cut(s)	775
HpyCH4V	TGCA	4 cut(s)	464, 656, 778, 992
HpyF3I	CTNAG	3 cut(s)	285, 570, 874
Hsp92II	CATG	1 cut(s)	1033
KflI	GGGWCCC	1 cut(s)	279
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
Kzo9I	GATC	6 cut(s)	328, 634, 784, 1009, 1017, 1021
LmnI	GCTCC	1 cut(s)	869
Lsp1109I	GCAGC	4 cut(s)	148, 469, 790, 976
MaeI	CTAG	2 cut(s)	360, 537
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	6 cut(s)	330, 636, 786, 1011, 1019, 1023
MboI	GATC	6 cut(s)	328, 634, 784, 1009, 1017, 1021
MboII	GAAGA	7 cut(s)	541, 760, 763, 913, 938, 945, 1016
MflI	RGATCY	1 cut(s)	1009
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	9 cut(s)	13, 34, 55, 340, 400, 408, 532, 646, 755
MlyI	GAGTC	2 cut(s)	898, 989
MmeI	TCCRAC	3 cut(s)	356, 471, 951
MroNI	GCCGGC	1 cut(s)	157
MseI	TTAA	5 cut(s)	47, 195, 459, 645, 687
MspA1I	CMGCKG	2 cut(s)	482, 781
MspI	CCGG	4 cut(s)	158, 188, 240, 867
MspR9I	CCNGG	5 cut(s)	106, 146, 189, 241, 1014
MvaI	CCWGG	3 cut(s)	106, 146, 1014
NaeI	GCCGGC	1 cut(s)	159
NciI	CCSGG	2 cut(s)	189, 241
NdeII	GATC	6 cut(s)	328, 634, 784, 1009, 1017, 1021
NgoMIV	GCCGGC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	1033
NlaIV	GGNNCC	6 cut(s)	6, 280, 281, 316, 601, 871
NmeAIII	GCCGAG	3 cut(s)	64, 116, 135
NspV	TTCGAA	3 cut(s)	38, 205, 224
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdiI	GCCGGC	1 cut(s)	159
PfeI	GAWTC	4 cut(s)	226, 356, 614, 725
PflFI	GACNNNGTC	1 cut(s)	670
PflMI	CCANNNNNTGG	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	5 cut(s)	163, 419, 484, 780, 991
PleI	GAGTC	2 cut(s)	898, 989
PpsI	GAGTC	2 cut(s)	898, 989
PpuMI	RGGWCCY	2 cut(s)	279, 599
PshBI	ATTAAT	1 cut(s)	687
PsiI	TTATAA	1 cut(s)	1042
Psp5II	RGGWCCY	2 cut(s)	279, 599
Psp6I	CCWGG	3 cut(s)	104, 144, 1012
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	3 cut(s)	104, 144, 1012
PspN4I	GGNNCC	6 cut(s)	6, 280, 281, 316, 601, 871
PspPI	GGNCC	5 cut(s)	4, 242, 279, 315, 599
PspPPI	RGGWCCY	2 cut(s)	279, 599
PstI	CTGCAG	1 cut(s)	994
PstNI	CAGNNNCTG	3 cut(s)	151, 251, 266
PsuI	RGATCY	1 cut(s)	1009
PsyI	GACNNNGTC	1 cut(s)	670
PvuII	CAGCTG	2 cut(s)	482, 781
RsaI	GTAC	2 cut(s)	793, 885
RsaNI	GTAC	2 cut(s)	792, 884
SaqAI	TTAA	5 cut(s)	47, 195, 459, 645, 687
SatI	GCNGC	5 cut(s)	162, 418, 483, 779, 990
Sau3AI	GATC	6 cut(s)	328, 634, 784, 1009, 1017, 1021
Sau96I	GGNCC	5 cut(s)	4, 242, 279, 315, 599
ScaI	AGTACT	1 cut(s)	793
SchI	GAGTC	2 cut(s)	898, 989
ScrFI	CCNGG	5 cut(s)	106, 146, 189, 241, 1014
SduI	GDGCHC	1 cut(s)	137
SfcI	CTRYAG	1 cut(s)	990
SfuI	TTCGAA	3 cut(s)	38, 205, 224
SinI	GGWCC	3 cut(s)	4, 279, 599
Sse9I	AATT	9 cut(s)	13, 34, 55, 340, 400, 408, 532, 646, 755
SsiI	CCGC	2 cut(s)	417, 485
SspMI	CTAG	2 cut(s)	360, 537
StyD4I	CCNGG	5 cut(s)	104, 144, 187, 239, 1012
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	775
TaqI	TCGA	9 cut(s)	32, 38, 205, 216, 224, 473, 766, 953, 1020
TasI	AATT	9 cut(s)	13, 34, 55, 340, 400, 408, 532, 646, 755
TatI	WGTACW	2 cut(s)	791, 883
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	4 cut(s)	226, 356, 614, 725
Tru1I	TTAA	5 cut(s)	47, 195, 459, 645, 687
Tru9I	TTAA	5 cut(s)	47, 195, 459, 645, 687
TscAI	CASTG	1 cut(s)	658
TseI	GCWGC	4 cut(s)	161, 482, 778, 989
TspDTI	ATGAA	4 cut(s)	173, 561, 738, 914
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	658
Tth111I	GACNNNGTC	1 cut(s)	670
Van91I	CCANNNNNTGG	1 cut(s)	251
VpaK11BI	GGWCC	3 cut(s)	4, 279, 599
VspI	ATTAAT	1 cut(s)	687
XapI	RAATTY	5 cut(s)	13, 34, 340, 400, 532
XspI	CTAG	2 cut(s)	360, 537
ZrmI	AGTACT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.