Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004583

Physical Location & Seq

Genomic Coordinates Forward (+)

30170484 .. 30171485

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0267300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGCTGCCATTCAAAGTCCTCAACTGGAATTGTCGAGTACTGGTTAATATAGAAGTGCAGAGTGCTTTGGTTGCTCAGGTTTGTCATGTCAACCCTAGCTTGGTGTTTGTCTCGGAAACCCTTGTCGAACCAATACTTATAGAGGACCTGCGAGTTGAAATGGGTTTCTCTGGCTGTATTTGCTTTCCCAAAAGGGATGGCTCACTAGGTTTGGCTTTATTCTGGTCTTCAGAGTTGAAGGTGAGTCTTCGTACCTACTCCGCACATCACATTGATGCTGAGATAGGGATTCCTGGTGTCGTTGGAGTTTGGCGATTCACAGGCATCTATGGATCTTCAAGGCATGGTGATAGGGTTCACACTTGGGACTTGCTTCGTACTCTGGCAGCACAAGTGAATCTACCATGGTTAATAACCGGCGACTTTAATGAGATTTTGTGTGCAGCTGATAAATCCGGTGGTCCACCATGGAATGCTGCGATGATGACACGGTTCAGGGAAGCCTCAACTGATTGTAATCTGGAAGACATGGGGTTTGTGGGTTCTCAGTTCACATGGTTTAATCGGTTCACCAAGGAACGTTTGGACCGTGGTTGTTGCACGCAAGATTGGCATGCTATGTACCCGTACTCTAGGGTTGTCACACTATCTCCAAACATGTCAGATCACAACCCCATTGTGGTGGAGATAGTTGATGCACCAGTTGTCAAAGTGCCAAGGCTCAGGCACTTTAGGTTTGAGAATATGTTGATGCAACATGGCGATTGCGCTGCTGTTATTCAGAAGGGATGGTCCATTCCCTCTGTAGGTGAACCTATGAAGCAAGTTGGATTCAAAATTGGTTCAACTGGCAGGCTATTGATGGAATGGGATGCAGGAACATTTCGGCAGAGAAAAACCGAGATGCATCTCTTGCAATCTAAGATGGATATGTTGATGAAACTCCTTTATGATCCTGTTCATTTTGAGCAGCAGAAAACTCTCCAGTTTGGATATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008047 GO:0008150 GO:0009987 GO:0030234 GO:0031072 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0051084 GO:0051085 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0061077 GO:0065007 GO:0065009 GO:0070013 GO:0080134 GO:0080135 GO:0098772 GO:1900034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

333

Amino Acids

37.87

Weight (kDa)

6.83

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	8 - 197	2.3e-07	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12430
fragaria_vesca	FvH4_3g28360 FvH4_3g28360 FvH4_3g28360 FvH4_3g28360
malus_domestica	MD03G1171100.v1.1 MD03G1171300.v1.1 MD11G1188500.v1.1 MD11G1188700.v1.1
prunus_persica	Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1
pyrus_communis	pycom03g12820 pycom03g12830 pycom03g12840 pycom03g12860 pycom11g16530 pycom15g27190
rosa_chinensis	RchiOBHm_Chr5g0053371
rosa_laevigata	RLG00000034766
rosa_multiflora	Rmu_sc0001966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029100
rosa_rugosa	Rorug05G0267200 Rorug05G0267300
rosa_samantha	Rh5AG339800 Rh5BG350200 Rh5CG376600 Rh5DG364200
rosa_wichuraiana	Rw5G032070 Rw5G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	156
AciI	CCGC	1 cut(s)	261
AclI	AACGTT	1 cut(s)	580
AclWI	GGATC	2 cut(s)	340, 947
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	5 cut(s)	39, 253, 379, 623, 629
AfiI	CCNNNNNNNGG	3 cut(s)	100, 679, 806
AflIII	ACRYGT	1 cut(s)	657
AgsI	TTSAA	6 cut(s)	13, 158, 238, 339, 835, 846
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	2 cut(s)	99, 446
AluI	AGCT	2 cut(s)	99, 446
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	2 cut(s)	340, 947
ApeKI	GCWGC	6 cut(s)	4, 386, 443, 476, 770, 970
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
AspLEI	GCGC	1 cut(s)	770
AspS9I	GGNCC	4 cut(s)	145, 461, 586, 792
AsuHPI	GGTGA	4 cut(s)	253, 359, 562, 821
AvaII	GGWCC	4 cut(s)	145, 461, 586, 792
BbsI	GAAGAC	3 cut(s)	219, 239, 531
BbvI	GCAGC	5 cut(s)	398, 455, 463, 757, 982
BccI	CCATC	4 cut(s)	191, 783, 856, 919
BcgI	CGANNNNNNTGC	2 cut(s)	752, 786
BciT130I	CCWGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	3 cut(s)	96, 206, 633
BfmI	CTRYAG	1 cut(s)	804
BfuAI	ACCTGC	1 cut(s)	156
BisI	GCNGC	6 cut(s)	5, 387, 444, 477, 771, 971
BlsI	GCNGC	6 cut(s)	6, 388, 445, 478, 772, 972
BmcAI	AGTACT	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	4 cut(s)	145, 461, 586, 792
BmgT120I	GGNCC	4 cut(s)	145, 461, 586, 792
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	7 cut(s)	265, 333, 685, 741, 862, 894, 916
BpiI	GAAGAC	3 cut(s)	219, 239, 531
BpmI	CTGGAG	1 cut(s)	968
Bpu10I	CCTNAGC	2 cut(s)	75, 722
BsaBI	GATNNNNATC	1 cut(s)	516
BsaJI	CCNNGG	5 cut(s)	404, 467, 573, 589, 716
BsaWI	WCCGGW	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	634, 664
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 679, 806
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	5 cut(s)	29, 45, 701, 853, 985
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	5 cut(s)	404, 467, 573, 589, 716
BseGI	GGATG	3 cut(s)	202, 794, 877
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	3 cut(s)	100, 679, 806
BseMII	CTCAG	4 cut(s)	89, 270, 560, 736
BseNI	ACTGG	5 cut(s)	29, 45, 701, 853, 985
BseXI	GCAGC	5 cut(s)	398, 455, 463, 757, 982
BsgI	GTGCAG	2 cut(s)	77, 462
BsiSI	CCGG	2 cut(s)	417, 456
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	3 cut(s)	100, 679, 806
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	478
Bsp143I	GATC	3 cut(s)	332, 664, 952
Bsp19I	CCATGG	2 cut(s)	404, 467
BspACI	CCGC	1 cut(s)	261
BspCNI	CTCAG	4 cut(s)	88, 271, 559, 735
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	340, 947
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	5 cut(s)	29, 45, 701, 853, 985
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	5 cut(s)	404, 467, 573, 589, 716
BssMI	GATC	3 cut(s)	332, 664, 952
BssT1I	CCWWGG	4 cut(s)	404, 467, 573, 716
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	492, 590
BstAPI	GCANNNNNTGC	1 cut(s)	913
BstC8I	GCNNGC	3 cut(s)	602, 615, 854
BstDEI	CTNAG	5 cut(s)	75, 279, 546, 722, 921
BstDSI	CCRYGG	3 cut(s)	404, 467, 589
BstF5I	GGATG	3 cut(s)	202, 794, 877
BstHHI	GCGC	1 cut(s)	770
BstKTI	GATC	3 cut(s)	335, 667, 955
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	3 cut(s)	332, 664, 952
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 180, 610, 913
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	2 cut(s)	617, 661
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	804
BstV1I	GCAGC	5 cut(s)	398, 455, 463, 757, 982
BstV2I	GAAGAC	3 cut(s)	219, 239, 531
BstX2I	RGATCY	1 cut(s)	332
BstXI	CCANNNNNNTGG	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	332
BtgI	CCRYGG	3 cut(s)	404, 467, 589
BtgZI	GCGATG	1 cut(s)	494
BtsCI	GGATG	3 cut(s)	202, 794, 877
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	3 cut(s)	602, 615, 854
CfoI	GCGC	1 cut(s)	770
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	4 cut(s)	145, 461, 586, 792
Csp6I	GTAC	5 cut(s)	38, 252, 378, 622, 628
CviAII	CATG	9 cut(s)	86, 344, 405, 468, 529, 555, 614, 658, 758
CviJI	RGCY	8 cut(s)	99, 174, 201, 215, 446, 503, 721, 856
CviKI_1	RGCY	8 cut(s)	99, 174, 201, 215, 446, 503, 721, 856
CviQI	GTAC	5 cut(s)	38, 252, 378, 622, 628
DdeI	CTNAG	5 cut(s)	75, 279, 546, 722, 921
DpnI	GATC	3 cut(s)	334, 666, 954
DpnII	GATC	3 cut(s)	332, 664, 952
Eco130I	CCWWGG	4 cut(s)	404, 467, 573, 716
Eco47I	GGWCC	4 cut(s)	145, 461, 586, 792
Eco57I	CTGAAG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	4 cut(s)	404, 467, 573, 716
EcoT22I	ATGCAT	1 cut(s)	909
ErhI	CCWWGG	4 cut(s)	404, 467, 573, 716
FaeI	CATG	9 cut(s)	89, 347, 408, 471, 532, 558, 617, 661, 761
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	9 cut(s)	85, 343, 404, 467, 528, 554, 613, 657, 757
Fnu4HI	GCNGC	6 cut(s)	5, 387, 444, 477, 771, 971
FokI	GGATG	3 cut(s)	209, 801, 884
Fsp4HI	GCNGC	6 cut(s)	5, 387, 444, 477, 771, 971
FspBI	CTAG	3 cut(s)	96, 206, 633
GlaI	GCGC	1 cut(s)	769
GluI	GCNGC	6 cut(s)	5, 387, 444, 477, 771, 971
GsuI	CTGGAG	1 cut(s)	968
HapII	CCGG	2 cut(s)	417, 456
HhaI	GCGC	1 cut(s)	770
Hin1II	CATG	9 cut(s)	89, 347, 408, 471, 532, 558, 617, 661, 761
Hin6I	GCGC	1 cut(s)	768
HinP1I	GCGC	1 cut(s)	768
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	5 cut(s)	244, 289, 315, 397, 831
HpaII	CCGG	2 cut(s)	417, 456
HphI	GGTGA	4 cut(s)	253, 359, 562, 821
Hpy166II	GTNNAC	6 cut(s)	91, 358, 464, 552, 570, 812
Hpy188I	TCNGA	4 cut(s)	115, 232, 664, 783
Hpy188III	TCNNGA	1 cut(s)	521
Hpy8I	GTNNAC	6 cut(s)	91, 358, 464, 552, 570, 812
HpyAV	CCTTC	2 cut(s)	232, 778
HpyCH4III	ACNGT	2 cut(s)	492, 590
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	8 cut(s)	58, 443, 600, 698, 754, 875, 907, 916
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 180, 610, 913
HpyF3I	CTNAG	5 cut(s)	75, 279, 546, 722, 921
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	9 cut(s)	89, 347, 408, 471, 532, 558, 617, 661, 761
HspAI	GCGC	1 cut(s)	768
Kzo9I	GATC	3 cut(s)	332, 664, 952
Lsp1109I	GCAGC	5 cut(s)	398, 455, 463, 757, 982
LweI	GCATC	7 cut(s)	265, 333, 685, 741, 862, 894, 916
MaeI	CTAG	3 cut(s)	96, 206, 633
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	1 cut(s)	640
MalI	GATC	3 cut(s)	334, 666, 954
MboI	GATC	3 cut(s)	332, 664, 952
MboII	GAAGA	4 cut(s)	219, 239, 327, 536
MflI	RGATCY	1 cut(s)	332
MluCI	AATT	3 cut(s)	28, 837, 997
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	2 cut(s)	283, 808
MnlI	CCTC	4 cut(s)	29, 136, 514, 811
Mph1103I	ATGCAT	1 cut(s)	909
MseI	TTAA	5 cut(s)	45, 410, 426, 561, 1000
MslI	CAYNNNNRTG	2 cut(s)	273, 680
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	2 cut(s)	417, 456
MspR9I	CCNGG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	4 cut(s)	71, 180, 610, 913
NcoI	CCATGG	2 cut(s)	404, 467
NdeII	GATC	3 cut(s)	332, 664, 952
NlaIII	CATG	9 cut(s)	89, 347, 408, 471, 532, 558, 617, 661, 761
NmuCI	GTSAC	1 cut(s)	640
NsiI	ATGCAT	1 cut(s)	909
NspI	RCATGY	2 cut(s)	617, 661
PaeI	GCATGC	1 cut(s)	617
PciI	ACATGT	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	586
PctI	GAATGC	1 cut(s)	478
PfeI	GAWTC	4 cut(s)	289, 315, 397, 831
PkrI	GCNGC	6 cut(s)	6, 388, 445, 478, 772, 972
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PpuMI	RGGWCCY	1 cut(s)	145
PscI	ACATGT	1 cut(s)	657
Psp1406I	AACGTT	1 cut(s)	580
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspPI	GGNCC	4 cut(s)	145, 461, 586, 792
PspPPI	RGGWCCY	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	5 cut(s)	39, 253, 379, 623, 629
RsaNI	GTAC	5 cut(s)	38, 252, 378, 622, 628
RseI	CAYNNNNRTG	2 cut(s)	273, 680
SaqAI	TTAA	5 cut(s)	45, 410, 426, 561, 1000
SatI	GCNGC	6 cut(s)	5, 387, 444, 477, 771, 971
Sau3AI	GATC	3 cut(s)	332, 664, 952
Sau96I	GGNCC	4 cut(s)	145, 461, 586, 792
ScaI	AGTACT	1 cut(s)	39
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	294
SfaNI	GCATC	7 cut(s)	265, 333, 685, 741, 862, 894, 916
SfcI	CTRYAG	1 cut(s)	804
SinI	GGWCC	4 cut(s)	145, 461, 586, 792
SmiMI	CAYNNNNRTG	2 cut(s)	273, 680
SphI	GCATGC	1 cut(s)	617
Sse9I	AATT	3 cut(s)	28, 837, 997
SsiI	CCGC	1 cut(s)	261
SspMI	CTAG	3 cut(s)	96, 206, 633
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	4 cut(s)	404, 467, 573, 716
TaaI	ACNGT	2 cut(s)	492, 590
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	2 cut(s)	34, 126
TasI	AATT	3 cut(s)	28, 837, 997
TatI	WGTACW	1 cut(s)	37
TfiI	GAWTC	4 cut(s)	289, 315, 397, 831
Tru1I	TTAA	5 cut(s)	45, 410, 426, 561, 1000
Tru9I	TTAA	5 cut(s)	45, 410, 426, 561, 1000
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	6 cut(s)	4, 386, 443, 476, 770, 970
Tsp45I	GTSAC	1 cut(s)	640
TspDTI	ATGAA	3 cut(s)	833, 950, 953
VpaK11BI	GGWCC	4 cut(s)	145, 461, 586, 792
XceI	RCATGY	2 cut(s)	617, 661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580
XspI	CTAG	3 cut(s)	96, 206, 633
ZrmI	AGTACT	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.